Wall clock time and date at job start Tue Mar 31 2020 22:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 119.99833 * 2 1 4 4 C 1.50691 * 109.47307 * 269.99592 * 3 2 1 5 5 H 1.08004 * 119.99907 * 0.02562 * 4 3 2 6 6 C 1.37880 * 120.00199 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99856 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99861 * 180.02562 * 6 4 3 9 9 H 1.48509 * 109.47056 * 90.00468 * 8 6 4 10 10 H 1.48500 * 109.47107 * 210.00052 * 8 6 4 11 11 H 1.48494 * 109.47494 * 330.00346 * 8 6 4 12 12 C 1.34772 * 119.99904 * 180.02562 * 2 1 3 13 13 O 1.21283 * 120.00093 * 185.31548 * 12 2 1 14 14 C 1.50701 * 120.00166 * 5.30709 * 12 2 1 15 15 H 1.08994 * 110.82964 * 319.66718 * 14 12 2 16 16 C 1.54709 * 110.93190 * 83.37288 * 14 12 2 17 17 O 1.43772 * 102.78451 * 143.45379 * 16 14 12 18 18 C 1.36153 * 109.21972 * 332.18644 * 17 16 14 19 19 C 1.39281 * 129.88470 * 198.87116 * 18 17 16 20 20 C 1.37931 * 120.25808 * 180.62564 * 19 18 17 21 21 C 1.38364 * 120.33627 * 0.06772 * 20 19 18 22 22 Br 1.89103 * 120.12789 * 179.81757 * 21 20 19 23 23 C 1.38427 * 119.74701 * 359.79794 * 21 20 19 24 24 C 1.37738 * 119.96894 * 0.23498 * 23 21 20 25 25 H 1.09001 * 109.47128 * 264.14391 * 1 2 3 26 26 H 1.08995 * 109.47188 * 24.14570 * 1 2 3 27 27 H 1.09001 * 109.46980 * 144.14821 * 1 2 3 28 28 H 1.09002 * 109.47405 * 30.00244 * 3 2 1 29 29 H 1.09002 * 109.46961 * 149.99986 * 3 2 1 30 30 H 0.97006 * 119.99510 * 179.97438 * 7 6 4 31 31 H 1.08997 * 110.75038 * 25.12751 * 16 14 12 32 32 H 1.09000 * 110.74919 * 261.77455 * 16 14 12 33 33 H 1.08001 * 119.87465 * 0.64446 * 19 18 17 34 34 H 1.07998 * 119.83332 * 180.09557 * 20 19 18 35 35 H 1.08002 * 120.01270 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4207 5 1 2.0975 1.0961 -2.2416 6 6 3.1260 2.8780 -1.6727 7 7 3.5532 3.6181 -0.6730 8 14 3.4368 3.4175 -3.4338 9 1 2.3064 4.2602 -3.9002 10 1 4.6968 4.2008 -3.4966 11 1 3.5541 2.2206 -4.3049 12 6 2.1388 -1.1672 -0.0005 13 8 3.3478 -1.1695 0.0968 14 6 1.3902 -2.4694 -0.1218 15 1 0.4738 -2.4460 0.4677 16 6 1.0865 -2.7965 -1.6031 17 8 1.2339 -4.2258 -1.6501 18 6 2.1165 -4.6172 -0.6900 19 6 2.8368 -5.8031 -0.5690 20 6 3.6781 -5.9986 0.5064 21 6 3.8132 -5.0198 1.4750 22 35 4.9643 -5.2962 2.9497 23 6 3.1028 -3.8373 1.3603 24 6 2.2619 -3.6412 0.2872 25 1 -0.3633 -0.1049 1.0223 26 1 -0.3633 0.9377 -0.4204 27 1 -0.3633 -0.8330 -0.6019 28 1 1.6084 2.0284 0.5139 29 1 3.1499 1.1384 0.5138 30 1 4.0301 4.4441 -0.8503 31 1 1.8077 -2.3120 -2.2613 32 1 0.0688 -2.5046 -1.8622 33 1 2.7365 -6.5725 -1.3202 34 1 4.2345 -6.9202 0.5927 35 1 3.2047 -3.0706 2.1141 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159543700.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:51 Heat of formation + Delta-G solvation = -50.374780 kcal Electronic energy + Delta-G solvation = -21224.063751 eV Core-core repulsion = 17847.292090 eV Total energy + Delta-G solvation = -3376.771661 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.026 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.58498 -40.29006 -38.64289 -36.66929 -34.84296 -33.88124 -32.84509 -30.97481 -29.77044 -29.55126 -27.41735 -25.71054 -24.58732 -23.39905 -22.80743 -20.10648 -18.74544 -18.62978 -18.30463 -17.80538 -17.08800 -16.79356 -16.40019 -16.10208 -15.76716 -15.20790 -14.72990 -14.52018 -14.37198 -14.13758 -14.06204 -13.90316 -13.50973 -13.25553 -12.94344 -12.86835 -12.84230 -12.53896 -12.51672 -12.21710 -12.06114 -11.73510 -11.31054 -11.28916 -10.75506 -10.65383 -10.06404 -9.47966 -9.21105 -8.24131 -6.39183 -0.02973 0.14994 0.59032 1.36319 1.39328 1.48862 1.61565 2.03806 2.17765 2.37727 2.58549 3.06254 3.12446 3.40472 3.62992 3.72355 3.92194 4.10406 4.17882 4.28822 4.40194 4.50983 4.53319 4.68871 4.81098 4.83738 4.94208 4.99650 5.10414 5.19115 5.21366 5.31528 5.52614 5.79704 5.92836 6.02867 6.64284 6.72001 7.23470 7.38387 8.83157 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.015294 B = 0.003417 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.321875 B = 8193.446462 C = 9044.664255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.604 5.604 3 C 0.259 3.741 4 C -0.543 4.543 5 H 0.058 0.942 6 C 0.008 3.992 7 N -0.929 5.929 8 Si 0.967 3.033 9 H -0.262 1.262 10 H -0.284 1.284 11 H -0.271 1.271 12 C 0.509 3.491 13 O -0.583 6.583 14 C -0.092 4.092 15 H 0.150 0.850 16 C 0.071 3.929 17 O -0.296 6.296 18 C 0.112 3.888 19 C -0.130 4.130 20 C -0.048 4.048 21 C -0.131 4.131 22 Br -0.044 7.044 23 C -0.035 4.035 24 C -0.163 4.163 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.094 0.906 28 H 0.026 0.974 29 H -0.003 1.003 30 H 0.267 0.733 31 H 0.065 0.935 32 H 0.159 0.841 33 H 0.169 0.831 34 H 0.172 0.828 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.494 -21.272 3.311 22.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.335 5.335 3 C 0.138 3.862 4 C -0.582 4.582 5 H 0.076 0.924 6 C -0.191 4.191 7 N -0.568 5.568 8 Si 0.791 3.209 9 H -0.187 1.187 10 H -0.210 1.210 11 H -0.196 1.196 12 C 0.296 3.704 13 O -0.463 6.463 14 C -0.113 4.113 15 H 0.167 0.833 16 C -0.004 4.004 17 O -0.209 6.209 18 C 0.066 3.934 19 C -0.149 4.149 20 C -0.067 4.067 21 C -0.211 4.211 22 Br 0.041 6.959 23 C -0.055 4.055 24 C -0.165 4.165 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.112 0.888 28 H 0.044 0.956 29 H 0.015 0.985 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.176 0.824 33 H 0.186 0.814 34 H 0.189 0.811 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.502 -21.293 3.799 22.318 hybrid contribution 0.362 1.360 -0.681 1.563 sum -5.140 -19.933 3.118 20.820 Atomic orbital electron populations 1.22053 0.77564 1.04478 1.02899 1.48144 1.08552 1.06036 1.70793 1.18794 0.91159 0.80095 0.96200 1.21705 1.36921 1.06602 0.92930 0.92363 1.25857 0.94885 0.96478 1.01868 1.70058 1.38888 1.14795 1.33102 0.85427 0.78037 0.78300 0.79140 1.18669 1.20957 1.19589 1.20567 0.87493 0.85546 0.76747 1.90672 1.16499 1.87703 1.51444 1.21622 0.99943 0.89761 1.00010 0.83300 1.23940 1.05868 0.77868 0.92709 1.86837 1.57425 1.23637 1.53031 1.19911 0.90400 0.95617 0.87515 1.20566 0.97076 0.96500 1.00800 1.21162 0.96226 0.98608 0.90701 1.21670 1.03116 0.98162 0.98136 1.96672 1.62592 1.96646 1.39950 1.20181 0.93005 0.95388 0.96893 1.20387 1.02312 0.96536 0.97308 0.90881 0.90705 0.88798 0.95646 0.98500 0.92427 0.91633 0.82351 0.81393 0.81077 0.86593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.91 9.87 127.77 1.26 3.17 16 2 N -0.60 -24.38 2.86 -851.16 -2.43 -26.81 16 3 C 0.26 13.65 5.17 85.63 0.44 14.09 16 4 C -0.54 -30.41 9.38 25.60 0.24 -30.17 16 5 H 0.06 3.17 7.81 -2.91 -0.02 3.15 16 6 C 0.01 0.47 5.46 84.66 0.46 0.93 16 7 N -0.93 -55.74 13.29 21.45 0.28 -55.46 16 8 Si 0.97 44.06 29.54 68.60 2.03 46.08 16 9 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 12 C 0.51 20.56 6.80 87.66 0.60 21.15 16 13 O -0.58 -29.97 15.31 -3.04 -0.05 -30.02 16 14 C -0.09 -2.62 2.47 -11.40 -0.03 -2.65 16 15 H 0.15 3.13 7.18 -2.39 -0.02 3.11 16 16 C 0.07 1.73 7.16 72.56 0.52 2.25 16 17 O -0.30 -7.48 11.11 -95.29 -1.06 -8.54 16 18 C 0.11 2.97 7.03 22.67 0.16 3.13 16 19 C -0.13 -2.75 10.06 22.45 0.23 -2.53 16 20 C -0.05 -0.98 9.76 22.23 0.22 -0.77 16 21 C -0.13 -3.42 6.23 22.34 0.14 -3.28 16 22 Br -0.04 -1.03 33.71 -20.37 -0.69 -1.72 16 23 C -0.03 -1.07 9.08 22.20 0.20 -0.87 16 24 C -0.16 -4.93 5.31 -19.52 -0.10 -5.03 16 25 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.07 2.09 8.03 -2.39 -0.02 2.07 16 27 H 0.09 1.74 5.81 -2.39 -0.01 1.73 16 28 H 0.03 1.36 8.07 -2.39 -0.02 1.34 16 29 H 0.00 -0.19 7.36 -2.39 -0.02 -0.21 16 30 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 31 H 0.07 1.93 7.91 -2.39 -0.02 1.91 16 32 H 0.16 2.47 7.44 -2.39 -0.02 2.45 16 33 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 34 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 35 H 0.12 3.89 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -74.47 321.17 3.54 -70.94 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: 1.11 Total: 6.08 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: 4.33 Total: -0.56 kcal Atomic # 7 Polarization: -80.12 SS G_CDS: -2.15 Total: -82.27 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -1.10 Total: -38.56 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 35 Polarization: -1.03 SS G_CDS: -0.69 Total: -1.72 kcal Total: -74.47 3.54 -70.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159543700.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.563 kcal (2) G-P(sol) polarization free energy of solvation -74.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds