Wall clock time and date at job start Tue Mar 31 2020 21:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37927 * 119.93257 * 2 1 4 4 C 1.39593 * 119.86119 * 180.25417 * 3 2 1 5 5 C 1.47796 * 120.12991 * 179.71944 * 4 3 2 6 6 O 1.21553 * 120.00547 * 352.84248 * 5 4 3 7 7 N 1.34783 * 119.99704 * 172.84104 * 5 4 3 8 8 C 1.47581 * 134.49498 * 174.44116 * 7 5 4 9 9 C 1.53938 * 86.11843 * 155.35445 * 8 7 5 10 10 O 1.42903 * 113.74587 * 269.15244 * 9 8 7 11 11 C 1.50700 * 113.74294 * 137.95333 * 9 8 7 12 12 H 1.08003 * 119.99715 * 1.92180 * 11 9 8 13 13 C 1.37874 * 120.00371 * 181.92604 * 11 9 8 14 14 N 1.31516 * 120.00005 * 179.97438 * 13 11 9 15 15 Si 1.86803 * 119.99971 * 359.97438 * 13 11 9 16 16 H 1.48496 * 109.47196 * 270.00039 * 15 13 11 17 17 H 1.48500 * 109.46922 * 30.00304 * 15 13 11 18 18 H 1.48500 * 109.47078 * 149.99611 * 15 13 11 19 19 C 1.47809 * 134.45704 * 354.30323 * 7 5 4 20 20 C 1.39619 * 119.73122 * 359.44263 * 4 3 2 21 21 C 1.37885 * 119.86497 * 0.27792 * 20 4 3 22 22 C 1.38461 * 119.93209 * 179.69476 * 2 1 3 23 23 Br 1.89100 * 119.86385 * 0.04629 * 22 2 1 24 24 H 1.09006 * 109.47499 * 270.30142 * 1 2 3 25 25 H 1.09001 * 109.47191 * 30.30316 * 1 2 3 26 26 H 1.09002 * 109.47318 * 150.30075 * 1 2 3 27 27 H 1.07996 * 120.06936 * 359.97438 * 3 2 1 28 28 H 1.09004 * 113.76593 * 41.05301 * 8 7 5 29 29 H 1.08992 * 113.86894 * 269.67491 * 8 7 5 30 30 H 0.96702 * 114.00264 * 178.07169 * 10 9 8 31 31 H 0.97001 * 119.99823 * 180.02562 * 14 13 11 32 32 H 1.09001 * 113.76739 * 90.38229 * 19 7 5 33 33 H 1.09006 * 113.83627 * 318.92148 * 19 7 5 34 34 H 1.07999 * 120.07039 * 180.25614 * 20 4 3 35 35 H 1.07999 * 119.93379 * 179.97438 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1952 1.1953 0.0000 4 6 3.5911 1.1936 -0.0054 5 6 4.3345 2.4709 -0.0117 6 8 3.7372 3.5213 -0.1433 7 7 5.6751 2.4711 0.1286 8 6 6.7213 3.5101 0.0670 9 6 7.5556 2.5749 0.9610 10 8 7.3793 2.8076 2.3598 11 6 9.0051 2.4847 0.5587 12 1 9.3733 3.0723 -0.2694 13 6 9.8613 1.6521 1.2476 14 7 11.1262 1.5731 0.8962 15 14 9.2248 0.6363 2.6803 16 1 9.3655 1.4123 3.9385 17 1 7.7934 0.3093 2.4577 18 1 10.0093 -0.6204 2.7832 19 6 6.6868 1.4305 0.4086 20 6 4.2820 -0.0197 0.0011 21 6 3.5828 -1.2080 0.0069 22 6 2.1978 -1.1999 0.0064 23 35 1.2465 -2.8342 0.0138 24 1 -0.3634 0.0054 1.0277 25 1 -0.3634 0.8873 -0.5185 26 1 -0.3634 -0.8927 -0.5092 27 1 1.6552 2.1306 -0.0004 28 1 6.4406 4.4455 0.5510 29 1 7.1404 3.6555 -0.9286 30 1 7.8791 2.2029 2.9253 31 1 11.7285 0.9870 1.3807 32 1 7.0947 0.9621 -0.4871 33 1 6.3785 0.7085 1.1649 34 1 5.3620 -0.0274 0.0012 35 1 4.1161 -2.1471 0.0115 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193971593.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:06 Heat of formation + Delta-G solvation = -0.628027 kcal Electronic energy + Delta-G solvation = -21173.732033 eV Core-core repulsion = 17799.117553 eV Total energy + Delta-G solvation = -3374.614480 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.026 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.40329 -39.10081 -37.51922 -34.63285 -33.37784 -32.61907 -32.26455 -29.99887 -28.85574 -27.27466 -25.69442 -25.57011 -23.01736 -22.08628 -20.17110 -19.03774 -17.57478 -16.91479 -16.70195 -16.05283 -15.88189 -15.12807 -15.00601 -14.39592 -14.21908 -13.81267 -13.66795 -13.33272 -13.19085 -12.73130 -12.54933 -12.51760 -12.40179 -12.23919 -11.83213 -11.47027 -11.23266 -11.04084 -10.97798 -10.68778 -10.37020 -10.20120 -9.90363 -9.41901 -9.09949 -9.05910 -8.84205 -8.75149 -8.15054 -6.48930 -4.55921 0.56097 1.11251 1.36201 2.84592 2.93255 2.94857 3.08798 3.20097 3.76171 3.96264 4.45404 4.52705 4.56931 4.65647 4.97601 5.04639 5.09179 5.26614 5.37175 5.38842 5.46074 5.66525 5.78707 5.88508 5.92570 6.01269 6.03705 6.10428 6.17004 6.25494 6.37208 6.49973 6.58793 7.11938 7.95838 8.11099 8.41324 8.45984 8.55220 9.08033 10.63114 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.017740 B = 0.003475 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.935479 B = 8055.298422 C = 9217.883033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.069 4.069 3 C -0.060 4.060 4 C -0.100 4.100 5 C 0.570 3.430 6 O -0.551 6.551 7 N -0.626 5.626 8 C 0.129 3.871 9 C 0.197 3.803 10 O -0.552 6.552 11 C -0.538 4.538 12 H 0.092 0.908 13 C 0.082 3.918 14 N -0.874 5.874 15 Si 0.856 3.144 16 H -0.266 1.266 17 H -0.256 1.256 18 H -0.282 1.282 19 C 0.053 3.947 20 C -0.099 4.099 21 C -0.095 4.095 22 C -0.077 4.077 23 Br -0.050 7.050 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.144 0.856 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.353 0.647 31 H 0.272 0.728 32 H 0.100 0.900 33 H 0.076 0.924 34 H 0.151 0.849 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.150 -10.319 -1.625 20.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.071 4.071 3 C -0.080 4.080 4 C -0.103 4.103 5 C 0.360 3.640 6 O -0.432 6.432 7 N -0.359 5.359 8 C 0.007 3.993 9 C 0.156 3.844 10 O -0.363 6.363 11 C -0.576 4.576 12 H 0.110 0.890 13 C -0.124 4.124 14 N -0.509 5.509 15 Si 0.684 3.316 16 H -0.192 1.192 17 H -0.182 1.182 18 H -0.208 1.208 19 C -0.070 4.070 20 C -0.118 4.118 21 C -0.115 4.115 22 C -0.156 4.156 23 Br 0.036 6.964 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.161 0.839 28 H 0.097 0.903 29 H 0.116 0.884 30 H 0.205 0.795 31 H 0.082 0.918 32 H 0.118 0.882 33 H 0.094 0.906 34 H 0.169 0.831 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -19.202 -9.998 -1.901 21.732 hybrid contribution 0.509 -0.860 0.972 1.394 sum -18.693 -10.858 -0.929 21.637 Atomic orbital electron populations 1.20985 0.89894 1.03807 1.03255 1.19727 0.96819 0.91157 0.99377 1.21139 0.92643 0.97875 0.96338 1.20191 0.94139 0.93630 1.02384 1.17786 0.80830 0.88248 0.77100 1.90728 1.67726 1.32834 1.51877 1.50036 1.03561 1.14115 1.68169 1.23337 0.82877 0.93290 0.99769 1.20542 0.94005 0.90301 0.79551 1.86480 1.72215 1.60296 1.17298 1.21220 0.90451 1.27269 1.18648 0.88958 1.24997 0.94766 0.95926 0.96699 1.69852 1.03642 1.37301 1.40133 0.87385 0.79712 0.80869 0.83651 1.19213 1.18158 1.20815 1.24888 0.86539 0.94862 1.00700 1.22039 1.01880 0.91036 0.96836 1.21082 0.91817 0.99177 0.99387 1.21924 0.94762 0.91176 1.07782 1.96665 1.75321 1.26900 1.97538 0.90353 0.90712 0.90475 0.83864 0.90288 0.88375 0.79541 0.91801 0.88169 0.90577 0.83146 0.84394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 9.54 36.00 0.34 -0.77 16 2 C -0.07 -0.82 5.88 -104.66 -0.61 -1.44 16 3 C -0.06 -0.84 9.24 -39.19 -0.36 -1.20 16 4 C -0.10 -1.60 5.87 -104.97 -0.62 -2.22 16 5 C 0.57 11.00 7.98 -12.35 -0.10 10.90 16 6 O -0.55 -11.97 17.10 5.32 0.09 -11.88 16 7 N -0.63 -12.14 3.60 -179.26 -0.65 -12.78 16 8 C 0.13 2.57 8.23 -2.97 -0.02 2.55 16 9 C 0.20 4.29 1.06 -90.85 -0.10 4.19 16 10 O -0.55 -12.58 13.35 -35.23 -0.47 -13.05 16 11 C -0.54 -13.31 9.19 -34.44 -0.32 -13.63 16 12 H 0.09 2.45 8.06 -52.48 -0.42 2.03 16 13 C 0.08 2.06 5.47 -17.82 -0.10 1.97 16 14 N -0.87 -23.71 13.96 55.43 0.77 -22.94 16 15 Si 0.86 18.06 24.31 -169.99 -4.13 13.92 16 16 H -0.27 -5.53 7.05 56.52 0.40 -5.14 16 17 H -0.26 -4.97 5.16 56.52 0.29 -4.68 16 18 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 19 C 0.05 0.99 4.68 -2.84 -0.01 0.97 16 20 C -0.10 -1.41 9.08 -39.20 -0.36 -1.76 16 21 C -0.09 -1.17 9.77 -39.62 -0.39 -1.56 16 22 C -0.08 -0.92 6.23 -39.40 -0.25 -1.16 16 23 Br -0.05 -0.50 31.76 -68.01 -2.16 -2.66 16 24 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 26 H 0.08 0.65 6.63 -51.93 -0.34 0.30 16 27 H 0.14 1.94 7.67 -52.49 -0.40 1.54 16 28 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 29 H 0.10 1.80 8.09 -51.93 -0.42 1.38 16 30 H 0.35 7.63 3.57 45.56 0.16 7.79 16 31 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 32 H 0.10 1.74 8.00 -51.93 -0.42 1.32 16 33 H 0.08 1.36 5.59 -51.93 -0.29 1.07 16 34 H 0.15 2.13 4.09 -52.49 -0.21 1.91 16 35 H 0.14 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 308.05 15.07 4.64 4.64 Total: -1.00 -28.78 308.05 -8.07 -36.85 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -3.28 Total: 11.06 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -2.88 Total: -3.16 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.13 Total: -35.72 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.38 Total: -24.92 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -4.13 Total: 13.92 kcal Atomic # 35 Polarization: -0.50 SS G_CDS: -2.16 Total: -2.66 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.78 -8.07 -36.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193971593.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.218 kcal (2) G-P(sol) polarization free energy of solvation -28.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds