Wall clock time and date at job start Tue Mar 31 2020 21:54:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.38407 * 119.84700 * 2 1
4 4 C 1.37905 * 120.17700 * 179.76125 * 3 2 1
5 5 C 1.39620 * 119.86054 * 0.51187 * 4 3 2
6 6 C 1.47788 * 120.15243 * 179.76744 * 5 4 3
7 7 O 1.21557 * 119.99555 * 154.92811 * 6 5 4
8 8 N 1.34779 * 120.00038 * 334.92435 * 6 5 4
9 9 C 1.47572 * 134.48953 * 174.77961 * 8 6 5
10 10 C 1.53943 * 86.11670 * 155.36104 * 9 8 6
11 11 O 1.42902 * 113.74190 * 269.15597 * 10 9 8
12 12 C 1.50700 * 113.74662 * 137.95236 * 10 9 8
13 13 H 1.07997 * 119.99597 * 1.92019 * 12 10 9
14 14 C 1.37879 * 120.00133 * 181.93003 * 12 10 9
15 15 N 1.31514 * 120.00064 * 359.97438 * 14 12 10
16 16 Si 1.86799 * 119.99869 * 180.02562 * 14 12 10
17 17 H 1.48495 * 109.47269 * 179.97438 * 16 14 12
18 18 H 1.48508 * 109.46963 * 299.99607 * 16 14 12
19 19 H 1.48498 * 109.47323 * 59.99013 * 16 14 12
20 20 C 1.47809 * 134.45338 * 354.65029 * 8 6 5
21 21 C 1.39662 * 119.69217 * 359.48929 * 5 4 3
22 22 Br 1.89108 * 120.08618 * 180.23218 * 21 5 4
23 23 C 1.38120 * 119.82679 * 0.25458 * 21 5 4
24 24 H 1.08996 * 109.47201 * 269.97660 * 1 2 3
25 25 H 1.08995 * 109.46996 * 29.98167 * 1 2 3
26 26 H 1.09009 * 109.46862 * 149.97759 * 1 2 3
27 27 H 1.08004 * 119.91200 * 0.04268 * 3 2 1
28 28 H 1.08000 * 120.07421 * 180.27835 * 4 3 2
29 29 H 1.08995 * 113.77571 * 41.06193 * 9 8 6
30 30 H 1.08999 * 113.87492 * 269.67123 * 9 8 6
31 31 H 0.96698 * 113.99929 * 178.07139 * 11 10 9
32 32 H 0.96997 * 119.99390 * 180.02562 * 15 14 12
33 33 H 1.09003 * 113.77110 * 90.38092 * 20 8 6
34 34 H 1.08997 * 113.83885 * 318.91159 * 20 8 6
35 35 H 1.07994 * 119.93067 * 179.97438 * 23 21 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1959 1.2005 0.0000
4 6 3.5749 1.2084 0.0050
5 6 4.2770 0.0016 -0.0008
6 6 5.7549 0.0027 -0.0007
7 8 6.3632 -0.9526 0.4408
8 7 6.4281 1.0627 -0.4903
9 6 7.8529 1.4410 -0.5590
10 6 7.4563 2.3080 -1.7677
11 8 7.5559 1.6282 -3.0207
12 6 8.1113 3.6652 -1.7820
13 1 8.8117 3.9349 -1.0055
14 6 7.8161 4.5626 -2.7862
15 7 6.9633 4.2340 -3.7320
16 14 8.6284 6.2446 -2.8043
17 1 8.1466 7.0145 -3.9790
18 1 8.2830 6.9745 -1.5579
19 1 10.1020 6.0818 -2.8901
20 6 6.0351 2.3118 -1.1759
21 6 3.5763 -1.2065 -0.0008
22 35 4.5161 -2.8475 -0.0019
23 6 2.1951 -1.1995 -0.0004
24 1 -0.3633 -0.0004 1.0276
25 1 -0.3633 0.8901 -0.5135
26 1 -0.3633 -0.8899 -0.5142
27 1 1.6519 2.1335 0.0007
28 1 4.1107 2.1461 0.0095
29 1 8.5157 0.6132 -0.8108
30 1 8.1985 2.0164 0.2998
31 1 7.2797 2.1600 -3.7797
32 1 6.7560 4.8653 -4.4387
33 1 5.8438 3.1436 -0.4980
34 1 5.2493 2.1778 -1.9193
35 1 1.6516 -2.1327 -0.0008
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000193989627.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:54:13
Heat of formation + Delta-G solvation = -12.469097 kcal
Electronic energy + Delta-G solvation = -21238.294084 eV
Core-core repulsion = 17863.166136 eV
Total energy + Delta-G solvation = -3375.127948 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 339.026 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-40.08452 -38.78530 -37.15619 -33.99928 -33.10036 -32.24513 -32.03022 -29.24528
-28.92681 -27.21431 -25.38631 -25.18304 -22.61105 -21.89096 -20.09625 -18.76960
-17.52448 -16.70818 -16.07139 -15.47812 -15.19381 -15.02077 -14.51303 -14.25858
-14.09857 -13.94696 -13.51023 -13.18532 -12.72353 -12.50376 -12.42165 -12.29760
-11.92769 -11.65577 -11.57873 -11.15105 -11.10897 -11.04468 -10.62400 -10.54160
-10.34096 -10.26866 -9.47037 -8.93393 -8.88964 -8.78127 -8.59793 -8.39388
-7.79154 -6.40962 -4.51717 0.82868 1.16025 1.80159 3.10289 3.14651
3.20919 3.23064 3.47359 3.86641 4.16896 4.58765 4.71164 4.79868
4.87148 5.06406 5.11976 5.33670 5.38506 5.50887 5.59871 5.70857
5.85635 5.89966 6.04171 6.17209 6.20558 6.35098 6.37535 6.44147
6.60668 6.64262 6.74549 7.07221 7.60856 7.80147 8.42833 8.51511
8.72393 9.19637 9.41771 10.65599
Molecular weight = 339.03amu
Principal moments of inertia in cm(-1)
A = 0.017222 B = 0.003912 C = 0.003373
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1625.396916 B = 7154.880617 C = 8298.298881
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.114 4.114
2 C -0.068 4.068
3 C -0.115 4.115
4 C -0.076 4.076
5 C -0.099 4.099
6 C 0.560 3.440
7 O -0.532 6.532
8 N -0.625 5.625
9 C 0.114 3.886
10 C 0.240 3.760
11 O -0.571 6.571
12 C -0.539 4.539
13 H 0.071 0.929
14 C 0.073 3.927
15 N -0.898 5.898
16 Si 0.907 3.093
17 H -0.285 1.285
18 H -0.274 1.274
19 H -0.273 1.273
20 C 0.075 3.925
21 C -0.043 4.043
22 Br -0.023 7.023
23 C -0.105 4.105
24 H 0.074 0.926
25 H 0.071 0.929
26 H 0.069 0.931
27 H 0.133 0.867
28 H 0.142 0.858
29 H 0.072 0.928
30 H 0.087 0.913
31 H 0.391 0.609
32 H 0.274 0.726
33 H 0.082 0.918
34 H 0.070 0.930
35 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.753 -6.746 6.192 15.700
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C -0.069 4.069
3 C -0.134 4.134
4 C -0.095 4.095
5 C -0.104 4.104
6 C 0.348 3.652
7 O -0.410 6.410
8 N -0.359 5.359
9 C -0.007 4.007
10 C 0.198 3.802
11 O -0.383 6.383
12 C -0.577 4.577
13 H 0.089 0.911
14 C -0.129 4.129
15 N -0.537 5.537
16 Si 0.734 3.266
17 H -0.210 1.210
18 H -0.199 1.199
19 H -0.198 1.198
20 C -0.048 4.048
21 C -0.124 4.124
22 Br 0.064 6.936
23 C -0.125 4.125
24 H 0.092 0.908
25 H 0.090 0.910
26 H 0.088 0.912
27 H 0.151 0.849
28 H 0.159 0.841
29 H 0.091 0.909
30 H 0.105 0.895
31 H 0.246 0.754
32 H 0.084 0.916
33 H 0.100 0.900
34 H 0.089 0.911
35 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges -12.033 -8.459 6.691 16.159
hybrid contribution -0.175 1.851 -0.422 1.907
sum -12.208 -6.608 6.269 15.232
Atomic orbital electron populations
1.20826 0.90422 1.03223 1.02621 1.20050 0.96419 0.92582 0.97847
1.21119 0.93895 0.97936 1.00420 1.21628 0.94356 0.97615 0.95923
1.19900 0.94414 0.92744 1.03319 1.17740 0.86153 0.82625 0.78653
1.90826 1.69304 1.33139 1.47770 1.50101 1.10411 1.18746 1.56611
1.23455 0.81865 0.97251 0.98150 1.19833 0.88935 0.89342 0.82075
1.86077 1.89542 1.45178 1.17471 1.21467 1.27028 0.97784 1.11400
0.91074 1.25060 0.93975 0.99246 0.94655 1.69397 1.33604 1.37162
1.13580 0.86406 0.79944 0.82523 0.77755 1.21010 1.19900 1.19838
1.24423 1.03231 0.82809 0.94338 1.21912 0.94399 0.92219 1.03878
1.96734 1.77073 1.22693 1.97137 1.20907 0.91536 0.98629 1.01436
0.90782 0.91035 0.91233 0.84933 0.84052 0.90945 0.89483 0.75403
0.91622 0.89960 0.91119 0.84757
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.88 10.00 36.01 0.36 -0.52 16
2 C -0.07 -0.77 5.88 -104.54 -0.62 -1.39 16
3 C -0.12 -1.41 9.68 -39.64 -0.38 -1.80 16
4 C -0.08 -1.16 8.83 -39.19 -0.35 -1.50 16
5 C -0.10 -1.77 5.82 -104.94 -0.61 -2.38 16
6 C 0.56 11.80 7.67 -12.35 -0.09 11.70 16
7 O -0.53 -12.23 14.84 5.32 0.08 -12.15 16
8 N -0.63 -13.27 3.58 -179.28 -0.64 -13.91 16
9 C 0.11 2.48 8.23 -2.97 -0.02 2.45 16
10 C 0.24 5.66 1.40 -90.84 -0.13 5.53 16
11 O -0.57 -14.65 13.48 -35.23 -0.48 -15.12 16
12 C -0.54 -13.20 8.61 -34.44 -0.30 -13.50 16
13 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16
14 C 0.07 1.79 5.40 -17.82 -0.10 1.69 16
15 N -0.90 -22.26 11.20 55.43 0.62 -21.64 16
16 Si 0.91 19.05 29.54 -169.99 -5.02 14.03 16
17 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16
18 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16
19 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16
20 C 0.07 1.56 5.70 -2.84 -0.02 1.54 16
21 C -0.04 -0.70 6.25 -39.09 -0.24 -0.95 16
22 Br -0.02 -0.38 30.74 -68.01 -2.09 -2.47 16
23 C -0.11 -1.36 9.42 -39.61 -0.37 -1.73 16
24 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
25 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16
26 H 0.07 0.47 8.08 -51.92 -0.42 0.05 16
27 H 0.13 1.26 8.06 -52.48 -0.42 0.83 16
28 H 0.14 2.12 5.57 -52.49 -0.29 1.83 16
29 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16
30 H 0.09 1.71 8.09 -51.93 -0.42 1.29 16
31 H 0.39 10.08 6.60 45.56 0.30 10.38 16
32 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16
33 H 0.08 1.60 7.71 -51.93 -0.40 1.20 16
34 H 0.07 1.50 7.87 -51.93 -0.41 1.09 16
35 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16
LS Contribution 318.11 15.07 4.79 4.79
Total: -1.00 -28.23 318.11 -8.90 -37.13
By element:
Atomic # 1 Polarization: 13.48 SS G_CDS: -3.30 Total: 10.18 kcal
Atomic # 6 Polarization: 2.02 SS G_CDS: -2.87 Total: -0.85 kcal
Atomic # 7 Polarization: -35.52 SS G_CDS: -0.02 Total: -35.55 kcal
Atomic # 8 Polarization: -26.88 SS G_CDS: -0.40 Total: -27.28 kcal
Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.03 kcal
Atomic # 35 Polarization: -0.38 SS G_CDS: -2.09 Total: -2.47 kcal
Total LS contribution 4.79 Total: 4.79 kcal
Total: -28.23 -8.90 -37.13 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000193989627.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 24.662 kcal
(2) G-P(sol) polarization free energy of solvation -28.232 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.570 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.131 kcal
(6) G-S(sol) free energy of system = (1) + (5) -12.469 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds