Wall clock time and date at job start Tue Mar 31 2020 21:54:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50705 * 1
3 3 C 1.38356 * 119.92001 * 2 1
4 4 C 1.38431 * 120.28208 * 180.02562 * 3 2 1
5 5 Br 1.89095 * 119.93679 * 180.28167 * 4 3 2
6 6 C 1.38072 * 120.12100 * 0.02562 * 4 3 2
7 7 C 1.39545 * 119.84581 * 359.97438 * 6 4 3
8 8 C 1.47844 * 120.14227 * 179.97438 * 7 6 4
9 9 O 1.21547 * 120.00195 * 172.16372 * 8 7 6
10 10 N 1.34777 * 119.99708 * 352.17085 * 8 7 6
11 11 C 1.47067 * 136.06167 * 2.55513 * 10 8 7
12 12 C 1.53231 * 88.08394 * 207.20789 * 11 10 8
13 13 O 1.42898 * 114.19774 * 87.72940 * 12 11 10
14 14 C 1.50699 * 114.32686 * 220.46941 * 12 11 10
15 15 H 1.08004 * 120.00048 * 93.76018 * 14 12 11
16 16 C 1.37884 * 120.00226 * 273.76330 * 14 12 11
17 17 N 1.31512 * 119.99916 * 359.97438 * 16 14 12
18 18 Si 1.86800 * 120.00048 * 179.97438 * 16 14 12
19 19 H 1.48500 * 109.47121 * 60.00215 * 18 16 14
20 20 H 1.48502 * 109.46920 * 180.02562 * 18 16 14
21 21 H 1.48494 * 109.46894 * 299.99531 * 18 16 14
22 22 C 1.47068 * 136.05635 * 182.93733 * 10 8 7
23 23 C 1.37943 * 119.92025 * 180.02562 * 2 1 3
24 24 H 1.09000 * 109.47204 * 269.97318 * 1 2 3
25 25 H 1.08998 * 109.46830 * 29.97528 * 1 2 3
26 26 H 1.08997 * 109.47175 * 149.97510 * 1 2 3
27 27 H 1.07999 * 119.86384 * 0.02562 * 3 2 1
28 28 H 1.08004 * 120.07759 * 180.02562 * 6 4 3
29 29 H 1.08995 * 113.46554 * 321.94420 * 11 10 8
30 30 H 1.09004 * 113.46609 * 92.38172 * 11 10 8
31 31 H 0.96704 * 114.00234 * 86.29900 * 13 12 11
32 32 H 0.96998 * 120.00756 * 180.02562 * 17 16 14
33 33 H 1.09007 * 113.46593 * 267.62036 * 22 10 8
34 34 H 1.09006 * 113.46887 * 38.05372 * 22 10 8
35 35 H 1.08005 * 120.06471 * 359.95559 * 23 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.1972 1.1992 0.0000
4 6 3.5814 1.2079 -0.0005
5 35 4.5147 2.8525 0.0075
6 6 4.2819 0.0180 -0.0016
7 6 3.5911 -1.1944 -0.0016
8 6 4.3345 -2.4724 -0.0033
9 8 3.7389 -3.5222 0.1402
10 7 5.6726 -2.4733 -0.1639
11 6 6.7220 -1.4538 -0.3137
12 6 7.5424 -2.4868 -1.0934
13 8 7.2691 -2.5143 -2.4957
14 6 9.0151 -2.4793 -0.7736
15 1 9.4078 -3.1478 -0.0217
16 6 9.8612 -1.6191 -1.4409
17 7 9.3831 -0.8053 -2.3567
18 14 11.6865 -1.6094 -1.0440
19 1 12.2582 -2.9536 -1.3109
20 1 12.3722 -0.6019 -1.8925
21 1 11.8799 -1.2643 0.3873
22 6 6.7254 -3.4945 -0.2731
23 6 2.1951 -1.1956 -0.0005
24 1 -0.3633 -0.0005 1.0277
25 1 -0.3633 0.8902 -0.5134
26 1 -0.3633 -0.8897 -0.5142
27 1 1.6536 2.1324 0.0004
28 1 5.3619 0.0257 -0.0016
29 1 6.4147 -0.6002 -0.9178
30 1 7.1794 -1.1596 0.6310
31 1 7.7854 -1.8783 -3.0096
32 1 9.9782 -0.2004 -2.8265
33 1 7.1837 -3.7494 0.6825
34 1 6.4210 -4.3726 -0.8427
35 1 1.6548 -2.1308 -0.0002
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000193990048.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:54:16
Heat of formation + Delta-G solvation = -13.380289 kcal
Electronic energy + Delta-G solvation = -21160.944075 eV
Core-core repulsion = 17785.776616 eV
Total energy + Delta-G solvation = -3375.167460 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 339.026 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-40.24879 -38.91107 -37.28669 -34.16749 -33.28808 -32.23848 -32.11911 -29.46161
-28.77557 -27.18731 -25.63202 -25.23394 -23.22146 -21.50907 -20.12950 -18.67726
-17.55187 -16.62492 -16.45389 -15.81250 -15.21574 -14.89580 -14.80290 -14.28786
-14.06691 -13.94199 -13.31333 -13.21164 -12.80061 -12.52756 -12.46232 -12.44251
-12.04750 -11.75811 -11.59743 -11.27997 -11.07323 -10.92787 -10.71512 -10.50225
-10.33821 -10.28873 -9.75069 -9.30867 -8.93190 -8.81921 -8.70181 -8.42274
-7.94617 -6.44009 -4.54828 0.81044 1.09959 1.57605 2.99535 3.14432
3.20726 3.22236 3.39981 3.88454 4.15352 4.56556 4.65072 4.79005
4.97377 5.11220 5.15984 5.22624 5.43128 5.45593 5.56571 5.65310
5.78450 5.86633 6.03755 6.09442 6.20904 6.27243 6.37428 6.39020
6.54964 6.58414 6.71190 7.04218 7.58977 7.74908 8.35302 8.48660
8.62486 9.16684 9.44033 10.62772
Molecular weight = 339.03amu
Principal moments of inertia in cm(-1)
A = 0.012580 B = 0.004487 C = 0.003456
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2225.253358 B = 6239.174493 C = 8099.595662
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.110 4.110
2 C -0.095 4.095
3 C -0.076 4.076
4 C -0.095 4.095
5 Br -0.047 7.047
6 C -0.076 4.076
7 C -0.108 4.108
8 C 0.577 3.423
9 O -0.558 6.558
10 N -0.627 5.627
11 C 0.060 3.940
12 C 0.243 3.757
13 O -0.571 6.571
14 C -0.536 4.536
15 H 0.073 0.927
16 C 0.074 3.926
17 N -0.897 5.897
18 Si 0.909 3.091
19 H -0.273 1.273
20 H -0.284 1.284
21 H -0.273 1.273
22 C 0.108 3.892
23 C -0.052 4.052
24 H 0.073 0.927
25 H 0.068 0.932
26 H 0.071 0.929
27 H 0.133 0.867
28 H 0.158 0.842
29 H 0.074 0.926
30 H 0.087 0.913
31 H 0.395 0.605
32 H 0.275 0.725
33 H 0.088 0.912
34 H 0.069 0.931
35 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.873 8.810 4.585 15.479
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C -0.096 4.096
3 C -0.096 4.096
4 C -0.174 4.174
5 Br 0.038 6.962
6 C -0.096 4.096
7 C -0.111 4.111
8 C 0.367 3.633
9 O -0.439 6.439
10 N -0.358 5.358
11 C -0.063 4.063
12 C 0.201 3.799
13 O -0.384 6.384
14 C -0.574 4.574
15 H 0.091 0.909
16 C -0.129 4.129
17 N -0.537 5.537
18 Si 0.736 3.264
19 H -0.198 1.198
20 H -0.209 1.209
21 H -0.198 1.198
22 C -0.014 4.014
23 C -0.071 4.071
24 H 0.091 0.909
25 H 0.087 0.913
26 H 0.090 0.910
27 H 0.151 0.849
28 H 0.175 0.825
29 H 0.092 0.908
30 H 0.105 0.895
31 H 0.251 0.749
32 H 0.086 0.914
33 H 0.106 0.894
34 H 0.088 0.912
35 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges -12.389 8.567 4.719 15.785
hybrid contribution 1.156 0.357 0.042 1.211
sum -11.234 8.924 4.761 15.116
Atomic orbital electron populations
1.20775 0.90113 1.03182 1.02646 1.19830 0.96567 0.92150 1.01020
1.21125 0.91952 0.98517 0.97974 1.21697 0.94665 0.91993 1.09071
1.96728 1.76055 1.25611 1.97757 1.22182 1.02391 0.90129 0.94865
1.20010 0.94053 0.93031 1.04044 1.17570 0.80444 0.88096 0.77150
1.90710 1.67862 1.32930 1.52432 1.49591 1.03627 1.13970 1.68640
1.24438 0.85671 0.94992 1.01165 1.19465 0.91488 0.88594 0.80382
1.86052 1.69018 1.65151 1.18167 1.21380 0.91334 1.22066 1.22657
0.90867 1.25071 0.99978 0.93841 0.94006 1.69241 1.36596 1.23086
1.24777 0.86362 0.83234 0.78192 0.78616 1.19792 1.20944 1.19821
1.23389 0.84376 0.94011 0.99588 1.21282 0.92650 0.98500 0.94653
0.90867 0.91267 0.91033 0.84863 0.82508 0.90831 0.89487 0.74863
0.91406 0.89371 0.91247 0.84203
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.93 10.01 36.01 0.36 -0.57 16
2 C -0.09 -1.14 5.87 -104.68 -0.61 -1.76 16
3 C -0.08 -0.92 9.43 -39.47 -0.37 -1.29 16
4 C -0.09 -1.35 6.22 -39.57 -0.25 -1.60 16
5 Br -0.05 -0.62 33.69 -68.01 -2.29 -2.91 16
6 C -0.08 -1.25 8.91 -39.16 -0.35 -1.60 16
7 C -0.11 -1.89 5.87 -104.97 -0.62 -2.50 16
8 C 0.58 12.06 8.00 -12.33 -0.10 11.96 16
9 O -0.56 -12.85 17.15 5.32 0.09 -12.76 16
10 N -0.63 -13.27 3.69 -186.53 -0.69 -13.96 16
11 C 0.06 1.26 5.89 -8.65 -0.05 1.21 16
12 C 0.24 5.70 1.57 -91.40 -0.14 5.56 16
13 O -0.57 -14.54 13.54 -35.23 -0.48 -15.01 16
14 C -0.54 -13.08 8.69 -34.44 -0.30 -13.38 16
15 H 0.07 1.72 7.81 -52.48 -0.41 1.31 16
16 C 0.07 1.79 5.39 -17.82 -0.10 1.70 16
17 N -0.90 -22.21 11.01 55.43 0.61 -21.60 16
18 Si 0.91 19.02 29.54 -169.99 -5.02 14.00 16
19 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16
20 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16
21 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16
22 C 0.11 2.33 8.04 -8.52 -0.07 2.26 16
23 C -0.05 -0.76 9.24 -39.18 -0.36 -1.13 16
24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
25 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16
26 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16
27 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16
28 H 0.16 2.72 3.88 -52.48 -0.20 2.52 16
29 H 0.07 1.55 6.17 -51.93 -0.32 1.23 16
30 H 0.09 1.72 8.10 -51.93 -0.42 1.30 16
31 H 0.39 10.14 6.32 45.56 0.29 10.43 16
32 H 0.28 6.52 8.31 -40.82 -0.34 6.18 16
33 H 0.09 1.72 8.10 -51.93 -0.42 1.30 16
34 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16
35 H 0.14 2.00 7.67 -52.48 -0.40 1.60 16
LS Contribution 319.96 15.07 4.82 4.82
Total: -1.00 -27.49 319.96 -9.04 -36.53
By element:
Atomic # 1 Polarization: 15.16 SS G_CDS: -3.13 Total: 12.03 kcal
Atomic # 6 Polarization: 1.81 SS G_CDS: -2.96 Total: -1.15 kcal
Atomic # 7 Polarization: -35.48 SS G_CDS: -0.08 Total: -35.56 kcal
Atomic # 8 Polarization: -27.39 SS G_CDS: -0.39 Total: -27.77 kcal
Atomic # 14 Polarization: 19.02 SS G_CDS: -5.02 Total: 14.00 kcal
Atomic # 35 Polarization: -0.62 SS G_CDS: -2.29 Total: -2.91 kcal
Total LS contribution 4.82 Total: 4.82 kcal
Total: -27.49 -9.04 -36.53 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000193990048.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 23.154 kcal
(2) G-P(sol) polarization free energy of solvation -27.491 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.337 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.043 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.534 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.380 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds