Wall clock time and date at job start Tue Mar 31 2020 21:54:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50705 * 1
3 3 C 1.38356 * 119.92001 * 2 1
4 4 C 1.38431 * 120.28208 * 180.02562 * 3 2 1
5 5 Br 1.89095 * 119.93679 * 180.28167 * 4 3 2
6 6 C 1.38072 * 120.12100 * 0.02562 * 4 3 2
7 7 C 1.39545 * 119.84581 * 359.97438 * 6 4 3
8 8 C 1.47844 * 120.14227 * 179.97438 * 7 6 4
9 9 O 1.21547 * 120.00195 * 172.16372 * 8 7 6
10 10 N 1.34777 * 119.99708 * 352.17085 * 8 7 6
11 11 C 1.47067 * 136.06167 * 2.55513 * 10 8 7
12 12 C 1.53231 * 88.08394 * 207.20789 * 11 10 8
13 13 O 1.42898 * 114.19774 * 87.72940 * 12 11 10
14 14 C 1.50699 * 114.32686 * 220.46941 * 12 11 10
15 15 H 1.08004 * 120.00048 * 93.76018 * 14 12 11
16 16 C 1.37884 * 120.00226 * 273.76330 * 14 12 11
17 17 N 1.31512 * 119.99916 * 359.97438 * 16 14 12
18 18 Si 1.86800 * 120.00048 * 179.97438 * 16 14 12
19 19 H 1.48500 * 109.47121 * 60.00215 * 18 16 14
20 20 H 1.48502 * 109.46920 * 180.02562 * 18 16 14
21 21 H 1.48494 * 109.46894 * 299.99531 * 18 16 14
22 22 C 1.47068 * 136.05635 * 182.93733 * 10 8 7
23 23 C 1.37943 * 119.92025 * 180.02562 * 2 1 3
24 24 H 1.09000 * 109.47204 * 269.97318 * 1 2 3
25 25 H 1.08998 * 109.46830 * 29.97528 * 1 2 3
26 26 H 1.08997 * 109.47175 * 149.97510 * 1 2 3
27 27 H 1.07999 * 119.86384 * 0.02562 * 3 2 1
28 28 H 1.08004 * 120.07759 * 180.02562 * 6 4 3
29 29 H 1.08995 * 113.46554 * 321.94420 * 11 10 8
30 30 H 1.09004 * 113.46609 * 92.38172 * 11 10 8
31 31 H 0.96704 * 114.00234 * 86.29900 * 13 12 11
32 32 H 0.96998 * 120.00756 * 180.02562 * 17 16 14
33 33 H 1.09007 * 113.46593 * 267.62036 * 22 10 8
34 34 H 1.09006 * 113.46887 * 38.05372 * 22 10 8
35 35 H 1.08005 * 120.06471 * 359.95559 * 23 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.1972 1.1992 0.0000
4 6 3.5814 1.2079 -0.0005
5 35 4.5147 2.8525 0.0075
6 6 4.2819 0.0180 -0.0016
7 6 3.5911 -1.1944 -0.0016
8 6 4.3345 -2.4724 -0.0033
9 8 3.7389 -3.5222 0.1402
10 7 5.6726 -2.4733 -0.1639
11 6 6.7220 -1.4538 -0.3137
12 6 7.5424 -2.4868 -1.0934
13 8 7.2691 -2.5143 -2.4957
14 6 9.0151 -2.4793 -0.7736
15 1 9.4078 -3.1478 -0.0217
16 6 9.8612 -1.6191 -1.4409
17 7 9.3831 -0.8053 -2.3567
18 14 11.6865 -1.6094 -1.0440
19 1 12.2582 -2.9536 -1.3109
20 1 12.3722 -0.6019 -1.8925
21 1 11.8799 -1.2643 0.3873
22 6 6.7254 -3.4945 -0.2731
23 6 2.1951 -1.1956 -0.0005
24 1 -0.3633 -0.0005 1.0277
25 1 -0.3633 0.8902 -0.5134
26 1 -0.3633 -0.8897 -0.5142
27 1 1.6536 2.1324 0.0004
28 1 5.3619 0.0257 -0.0016
29 1 6.4147 -0.6002 -0.9178
30 1 7.1794 -1.1596 0.6310
31 1 7.7854 -1.8783 -3.0096
32 1 9.9782 -0.2004 -2.8265
33 1 7.1837 -3.7494 0.6825
34 1 6.4210 -4.3726 -0.8427
35 1 1.6548 -2.1308 -0.0002
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000193990048.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:54:15
Heat of formation + Delta-G solvation = -30.290562 kcal
Electronic energy + Delta-G solvation = -21161.677360 eV
Core-core repulsion = 17785.776616 eV
Total energy + Delta-G solvation = -3375.900744 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 339.026 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-41.76186 -40.28068 -38.93177 -36.00439 -34.33860 -34.13572 -33.33444 -30.66787
-30.31336 -28.22878 -27.39710 -26.82794 -24.58967 -22.60433 -21.78826 -20.28266
-19.36321 -18.03491 -17.93517 -17.13050 -16.95970 -16.48103 -16.24996 -15.93238
-15.27630 -15.10272 -14.80397 -14.58944 -14.38306 -13.95203 -13.81810 -13.45281
-13.40807 -13.23226 -12.96487 -12.76979 -12.62401 -12.30620 -12.22816 -12.09994
-11.80847 -11.54228 -11.31900 -11.05594 -10.67381 -10.23695 -10.08028 -9.78236
-9.65376 -8.28280 -6.45654 -0.38542 -0.01958 0.48437 1.49146 1.50929
1.58200 1.63048 1.80474 2.40432 2.56772 2.92817 3.25167 3.58118
3.71479 3.89275 3.99853 4.07310 4.11681 4.20538 4.33234 4.50199
4.55436 4.68154 4.72934 4.77906 4.85053 4.88984 4.96166 5.12664
5.16984 5.19643 5.34572 5.62985 5.71642 5.88066 6.59925 6.70077
6.97461 7.28090 7.46182 8.77989
Molecular weight = 339.03amu
Principal moments of inertia in cm(-1)
A = 0.012580 B = 0.004487 C = 0.003456
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2225.253358 B = 6239.174493 C = 8099.595662
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.110 4.110
2 C -0.081 4.081
3 C -0.062 4.062
4 C -0.102 4.102
5 Br -0.037 7.037
6 C -0.089 4.089
7 C -0.133 4.133
8 C 0.571 3.429
9 O -0.589 6.589
10 N -0.631 5.631
11 C 0.078 3.922
12 C 0.222 3.778
13 O -0.586 6.586
14 C -0.555 4.555
15 H 0.077 0.923
16 C 0.035 3.965
17 N -0.916 5.916
18 Si 0.970 3.030
19 H -0.274 1.274
20 H -0.283 1.283
21 H -0.267 1.267
22 C 0.108 3.892
23 C -0.058 4.058
24 H 0.090 0.910
25 H 0.091 0.909
26 H 0.076 0.924
27 H 0.168 0.832
28 H 0.142 0.858
29 H 0.070 0.930
30 H 0.098 0.902
31 H 0.390 0.610
32 H 0.277 0.723
33 H 0.108 0.892
34 H 0.058 0.942
35 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.007 10.456 5.303 17.511
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C -0.082 4.082
3 C -0.082 4.082
4 C -0.181 4.181
5 Br 0.049 6.951
6 C -0.109 4.109
7 C -0.137 4.137
8 C 0.363 3.637
9 O -0.472 6.472
10 N -0.362 5.362
11 C -0.045 4.045
12 C 0.181 3.819
13 O -0.399 6.399
14 C -0.592 4.592
15 H 0.095 0.905
16 C -0.165 4.165
17 N -0.556 5.556
18 Si 0.795 3.205
19 H -0.199 1.199
20 H -0.208 1.208
21 H -0.191 1.191
22 C -0.014 4.014
23 C -0.077 4.077
24 H 0.108 0.892
25 H 0.110 0.890
26 H 0.095 0.905
27 H 0.186 0.814
28 H 0.160 0.840
29 H 0.088 0.912
30 H 0.116 0.884
31 H 0.246 0.754
32 H 0.087 0.913
33 H 0.126 0.874
34 H 0.076 0.924
35 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges -13.530 10.219 5.445 17.808
hybrid contribution 1.427 -0.119 -0.196 1.445
sum -12.103 10.100 5.249 16.614
Atomic orbital electron populations
1.20896 0.86943 1.04621 1.04142 1.20235 0.98601 0.90853 0.98537
1.21558 0.91108 0.99987 0.95547 1.21837 0.95694 0.91641 1.08922
1.96736 1.76278 1.24362 1.97725 1.21995 1.01770 0.90801 0.96309
1.19832 0.95026 0.91614 1.07201 1.18190 0.80169 0.89183 0.76134
1.90671 1.68254 1.34356 1.53925 1.49632 1.03989 1.13665 1.68917
1.24213 0.84980 0.94200 1.01074 1.19736 0.91991 0.90509 0.79666
1.86035 1.69120 1.65232 1.19522 1.21619 0.91990 1.22500 1.23141
0.90489 1.25750 1.03544 0.93431 0.93816 1.69309 1.37716 1.23382
1.25241 0.85420 0.78670 0.77888 0.78570 1.19902 1.20823 1.19133
1.23415 0.84538 0.93408 1.00073 1.21429 0.91583 0.99897 0.94828
0.89162 0.89010 0.90507 0.81445 0.84019 0.91208 0.88391 0.75381
0.91258 0.87411 0.92362 0.84206
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.41 10.01 71.24 0.71 -0.70 16
2 C -0.08 -1.73 5.87 -19.90 -0.12 -1.85 16
3 C -0.06 -1.32 9.43 22.34 0.21 -1.11 16
4 C -0.10 -2.73 6.22 22.28 0.14 -2.59 16
5 Br -0.04 -0.90 33.69 -20.37 -0.69 -1.59 16
6 C -0.09 -2.91 8.91 22.55 0.20 -2.71 16
7 C -0.13 -4.69 5.87 -20.09 -0.12 -4.81 16
8 C 0.57 24.47 8.00 86.79 0.69 25.17 16
9 O -0.59 -27.86 17.15 -3.86 -0.07 -27.92 16
10 N -0.63 -27.37 3.69 -862.82 -3.18 -30.55 16
11 C 0.08 3.32 5.89 83.08 0.49 3.81 16
12 C 0.22 10.65 1.57 -11.30 -0.02 10.63 16
13 O -0.59 -30.75 13.54 -148.98 -2.02 -32.76 16
14 C -0.55 -27.17 8.69 25.60 0.22 -26.95 16
15 H 0.08 3.62 7.81 -2.91 -0.02 3.59 16
16 C 0.04 1.71 5.39 84.66 0.46 2.17 16
17 N -0.92 -45.62 11.01 21.45 0.24 -45.39 16
18 Si 0.97 38.64 29.54 68.60 2.03 40.66 16
19 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16
20 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16
21 H -0.27 -10.28 7.11 99.48 0.71 -9.58 16
22 C 0.11 4.74 8.04 83.17 0.67 5.41 16
23 C -0.06 -1.67 9.24 22.53 0.21 -1.46 16
24 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16
25 H 0.09 0.83 8.08 -2.39 -0.02 0.81 16
26 H 0.08 0.96 8.08 -2.39 -0.02 0.94 16
27 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16
28 H 0.14 5.00 3.88 -2.91 -0.01 4.99 16
29 H 0.07 3.02 6.17 -2.39 -0.01 3.01 16
30 H 0.10 3.91 8.10 -2.38 -0.02 3.89 16
31 H 0.39 20.68 6.32 -74.05 -0.47 20.21 16
32 H 0.28 13.13 8.31 -92.71 -0.77 12.36 16
33 H 0.11 4.23 8.10 -2.38 -0.02 4.21 16
34 H 0.06 2.64 8.14 -2.38 -0.02 2.62 16
35 H 0.14 3.94 7.67 -2.91 -0.02 3.92 16
Total: -1.00 -59.58 319.96 0.73 -58.84
By element:
Atomic # 1 Polarization: 33.02 SS G_CDS: 0.67 Total: 33.70 kcal
Atomic # 6 Polarization: 1.26 SS G_CDS: 3.75 Total: 5.01 kcal
Atomic # 7 Polarization: -72.99 SS G_CDS: -2.94 Total: -75.93 kcal
Atomic # 8 Polarization: -58.60 SS G_CDS: -2.08 Total: -60.69 kcal
Atomic # 14 Polarization: 38.64 SS G_CDS: 2.03 Total: 40.66 kcal
Atomic # 35 Polarization: -0.90 SS G_CDS: -0.69 Total: -1.59 kcal
Total: -59.58 0.73 -58.84 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000193990048.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.552 kcal
(2) G-P(sol) polarization free energy of solvation -59.577 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.025 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.735 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.843 kcal
(6) G-S(sol) free energy of system = (1) + (5) -30.291 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds