Wall clock time and date at job start Tue Mar 31 2020 22:07:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09003 * 109.46529 * 2 1
4 4 C 1.50702 * 109.47491 * 239.99905 * 2 1 3
5 5 H 1.07994 * 120.00048 * 274.05586 * 4 2 1
6 6 C 1.37880 * 119.99711 * 94.33141 * 4 2 1
7 7 N 1.31511 * 119.99899 * 181.92569 * 6 4 2
8 8 Si 1.86802 * 120.00011 * 1.93381 * 6 4 2
9 9 H 1.48495 * 109.47123 * 85.07574 * 8 6 4
10 10 H 1.48501 * 109.46909 * 205.07329 * 8 6 4
11 11 H 1.48501 * 109.47061 * 325.07045 * 8 6 4
12 12 N 1.46505 * 109.47284 * 119.99696 * 2 1 3
13 13 C 1.34774 * 120.00089 * 275.00800 * 12 2 1
14 14 O 1.21284 * 120.00143 * 359.97438 * 13 12 2
15 15 C 1.50693 * 120.00212 * 180.02562 * 13 12 2
16 16 H 1.09001 * 110.66389 * 301.78478 * 15 13 12
17 17 C 1.54708 * 110.75270 * 64.99242 * 15 13 12
18 18 C 1.51642 * 101.91093 * 143.68854 * 17 15 13
19 19 C 1.37746 * 132.17433 * 164.32672 * 18 17 15
20 20 C 1.38422 * 119.97311 * 180.35139 * 19 18 17
21 21 Br 1.89102 * 120.12670 * 179.97438 * 20 19 18
22 22 C 1.38361 * 119.74604 * 359.97438 * 20 19 18
23 23 C 1.37923 * 120.34418 * 359.82473 * 22 20 19
24 24 C 1.38882 * 107.03481 * 344.33085 * 18 17 15
25 25 O 1.36152 * 111.24860 * 359.34888 * 24 18 17
26 26 H 1.08997 * 109.47578 * 303.99588 * 1 2 3
27 27 H 1.09003 * 109.47245 * 64.00446 * 1 2 3
28 28 H 1.09008 * 109.46988 * 183.99515 * 1 2 3
29 29 H 0.97001 * 120.00368 * 180.02562 * 7 6 4
30 30 H 0.96992 * 119.99994 * 95.00084 * 12 2 1
31 31 H 1.08996 * 110.94507 * 261.84941 * 17 15 13
32 32 H 1.08999 * 110.93675 * 25.50126 * 17 15 13
33 33 H 1.08003 * 120.01105 * 0.29107 * 19 18 17
34 34 H 1.08008 * 119.82968 * 179.84649 * 22 20 19
35 35 H 1.08001 * 119.88128 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8932 1.0277 0.0000
4 6 2.0324 -0.7104 -1.2304
5 1 2.1501 -1.7839 -1.2239
6 6 2.3472 0.0108 -2.3626
7 7 2.7496 -0.6124 -3.4485
8 14 2.2026 1.8732 -2.3539
9 1 3.4496 2.4640 -1.8054
10 1 1.9928 2.3598 -3.7411
11 1 1.0502 2.2762 -1.5084
12 7 2.0184 -0.6906 1.1962
13 6 2.1469 -0.0182 2.3572
14 8 1.8588 1.1586 2.4116
15 6 2.6498 -0.7283 3.5875
16 1 2.0084 -1.5750 3.8321
17 6 4.1144 -1.1881 3.3949
18 6 4.6916 -0.9838 4.7822
19 6 5.8437 -1.4430 5.3814
20 6 6.1258 -1.0993 6.6923
21 35 7.7059 -1.7280 7.5194
22 6 5.2472 -0.2940 7.3951
23 6 4.0953 0.1700 6.7951
24 6 3.8056 -0.1695 5.4756
25 8 2.7448 0.1806 4.6973
26 1 -0.3634 0.5746 0.8520
27 1 -0.3634 0.4504 -0.9237
28 1 -0.3633 -1.0252 0.0716
29 1 2.9714 -0.1050 -4.2449
30 1 2.2491 -1.6316 1.1527
31 1 4.1583 -2.2380 3.1054
32 1 4.6260 -0.5625 2.6635
33 1 6.5262 -2.0719 4.8289
34 1 5.4647 -0.0271 8.4188
35 1 3.4149 0.7984 7.3505
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000194203070.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:07:11
Heat of formation + Delta-G solvation = -60.559616 kcal
Electronic energy + Delta-G solvation = -20697.329703 eV
Core-core repulsion = 17320.116394 eV
Total energy + Delta-G solvation = -3377.213309 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 339.026 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-42.53406 -40.44880 -38.56440 -36.75296 -34.57251 -33.92250 -32.87404 -32.03554
-30.27346 -29.77442 -27.33954 -25.76453 -23.41183 -22.89099 -22.54571 -21.40886
-19.53986 -18.68756 -18.13809 -17.98341 -17.25370 -16.79453 -16.27647 -15.85184
-15.47011 -15.22833 -14.74351 -14.55629 -14.49749 -14.33155 -14.22081 -14.14020
-13.35026 -13.25999 -13.10283 -12.93811 -12.82940 -12.65502 -12.43136 -12.08162
-11.89826 -11.39179 -11.26759 -11.23988 -10.90896 -10.78388 -10.06854 -9.94042
-9.20240 -8.40154 -6.46354 -0.03075 0.14212 0.59620 1.27364 1.33687
1.43287 1.50183 1.64861 2.25591 2.36358 2.61132 2.99510 3.22871
3.37960 3.70503 3.76962 3.93878 4.03426 4.14976 4.38277 4.42850
4.61848 4.66088 4.72077 4.77541 4.79931 4.90648 5.06397 5.08578
5.20930 5.31206 5.35418 5.43438 5.64109 5.92191 6.09954 6.58675
6.76334 7.17813 7.31759 8.74332
Molecular weight = 339.03amu
Principal moments of inertia in cm(-1)
A = 0.023051 B = 0.002528 C = 0.002391
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1214.397937 B =11072.428346 C =11708.158985
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C 0.235 3.765
3 H 0.027 0.973
4 C -0.524 4.524
5 H 0.064 0.936
6 C 0.037 3.963
7 N -0.927 5.927
8 Si 0.920 3.080
9 H -0.277 1.277
10 H -0.277 1.277
11 H -0.256 1.256
12 N -0.689 5.689
13 C 0.505 3.495
14 O -0.583 6.583
15 C 0.070 3.930
16 H 0.149 0.851
17 C -0.094 4.094
18 C -0.172 4.172
19 C -0.040 4.040
20 C -0.129 4.129
21 Br -0.038 7.038
22 C -0.049 4.049
23 C -0.135 4.135
24 C 0.099 3.901
25 O -0.299 6.299
26 H 0.034 0.966
27 H 0.050 0.950
28 H 0.064 0.936
29 H 0.271 0.729
30 H 0.412 0.588
31 H 0.140 0.860
32 H 0.086 0.914
33 H 0.152 0.848
34 H 0.166 0.834
35 H 0.152 0.848
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.500 -5.401 24.727 26.699
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C 0.132 3.868
3 H 0.045 0.955
4 C -0.562 4.562
5 H 0.082 0.918
6 C -0.164 4.164
7 N -0.565 5.565
8 Si 0.745 3.255
9 H -0.203 1.203
10 H -0.203 1.203
11 H -0.180 1.180
12 N -0.340 5.340
13 C 0.291 3.709
14 O -0.464 6.464
15 C 0.010 3.990
16 H 0.167 0.833
17 C -0.131 4.131
18 C -0.174 4.174
19 C -0.060 4.060
20 C -0.208 4.208
21 Br 0.047 6.953
22 C -0.068 4.068
23 C -0.155 4.155
24 C 0.053 3.947
25 O -0.212 6.212
26 H 0.053 0.947
27 H 0.069 0.931
28 H 0.083 0.917
29 H 0.080 0.920
30 H 0.248 0.752
31 H 0.158 0.842
32 H 0.104 0.896
33 H 0.170 0.830
34 H 0.184 0.816
35 H 0.170 0.830
Dipole moment (debyes) X Y Z Total
from point charges 8.769 -4.608 24.868 26.768
hybrid contribution -0.286 0.670 -0.954 1.200
sum 8.483 -3.939 23.914 25.678
Atomic orbital electron populations
1.22150 0.96892 1.01445 0.99802 1.18909 0.92115 0.93022 0.82782
0.95492 1.21150 1.44307 0.95197 0.95553 0.91761 1.25529 0.93753
1.01901 0.95233 1.69952 1.45627 1.37692 1.03244 0.86163 0.79712
0.81902 0.77711 1.20284 1.20268 1.18002 1.46216 1.64654 1.14663
1.08425 1.20624 0.78142 0.87089 0.85090 1.90682 1.52216 1.17922
1.85544 1.23369 0.99900 0.91534 0.84149 0.83338 1.21800 0.91037
1.06028 0.94244 1.20761 0.97090 1.03532 0.96006 1.20381 0.94954
0.97728 0.92896 1.21699 0.96571 1.06073 0.96480 1.96723 1.30780
1.87621 1.80158 1.21096 0.91070 0.93843 1.00836 1.20503 0.99722
1.04529 0.90710 1.20107 0.87321 0.94642 0.92593 1.86930 1.46729
1.51685 1.35874 0.94698 0.93127 0.91688 0.91986 0.75192 0.84235
0.89591 0.83030 0.81617 0.82983
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -5.94 9.44 71.98 0.68 -5.26 16
2 C 0.24 10.63 2.16 44.24 0.10 10.73 16
3 H 0.03 1.36 4.90 -2.39 -0.01 1.35 16
4 C -0.52 -26.94 9.05 25.60 0.23 -26.71 16
5 H 0.06 3.46 8.06 -2.91 -0.02 3.44 16
6 C 0.04 2.00 5.47 84.66 0.46 2.47 16
7 N -0.93 -53.61 13.96 21.45 0.30 -53.31 16
8 Si 0.92 43.66 26.72 68.60 1.83 45.50 16
9 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16
10 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16
11 H -0.26 -11.88 6.87 99.48 0.68 -11.20 16
12 N -0.69 -25.09 5.06 -446.09 -2.26 -27.34 16
13 C 0.51 18.43 7.10 87.66 0.62 19.05 16
14 O -0.58 -27.17 16.23 15.19 0.25 -26.92 16
15 C 0.07 1.85 4.05 30.43 0.12 1.97 16
16 H 0.15 2.84 8.14 -2.39 -0.02 2.82 16
17 C -0.09 -2.07 6.63 30.73 0.20 -1.86 16
18 C -0.17 -3.83 6.27 -19.53 -0.12 -3.95 16
19 C -0.04 -0.75 9.78 22.20 0.22 -0.54 16
20 C -0.13 -2.28 6.23 22.34 0.14 -2.14 16
21 Br -0.04 -0.59 33.71 -20.37 -0.69 -1.27 16
22 C -0.05 -0.80 9.76 22.22 0.22 -0.58 16
23 C -0.14 -2.68 10.06 22.45 0.23 -2.45 16
24 C 0.10 2.50 7.04 22.68 0.16 2.66 16
25 O -0.30 -9.24 10.39 -77.05 -0.80 -10.04 16
26 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16
27 H 0.05 2.12 7.90 -2.39 -0.02 2.10 16
28 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16
29 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16
30 H 0.41 12.25 8.59 -92.71 -0.80 11.45 16
31 H 0.14 2.07 8.14 -2.39 -0.02 2.05 16
32 H 0.09 2.21 7.92 -2.39 -0.02 2.19 16
33 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16
34 H 0.17 1.80 8.06 -2.91 -0.02 1.77 16
35 H 0.15 2.49 8.06 -2.91 -0.02 2.46 16
Total: -1.00 -68.24 322.61 2.20 -66.04
By element:
Atomic # 1 Polarization: 13.67 SS G_CDS: 0.31 Total: 13.97 kcal
Atomic # 6 Polarization: -9.87 SS G_CDS: 3.26 Total: -6.62 kcal
Atomic # 7 Polarization: -78.70 SS G_CDS: -1.96 Total: -80.66 kcal
Atomic # 8 Polarization: -36.41 SS G_CDS: -0.55 Total: -36.96 kcal
Atomic # 14 Polarization: 43.66 SS G_CDS: 1.83 Total: 45.50 kcal
Atomic # 35 Polarization: -0.59 SS G_CDS: -0.69 Total: -1.27 kcal
Total: -68.24 2.20 -66.04 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000194203070.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 5.482 kcal
(2) G-P(sol) polarization free energy of solvation -68.241 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.758 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.199 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.042 kcal
(6) G-S(sol) free energy of system = (1) + (5) -60.560 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds