Wall clock time and date at job start Tue Mar 31 2020 22:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47058 * 2 1 4 4 C 1.50696 * 109.46920 * 240.00333 * 2 1 3 5 5 H 1.08002 * 120.00157 * 239.99968 * 4 2 1 6 6 C 1.37881 * 120.00447 * 60.00039 * 4 2 1 7 7 N 1.31510 * 119.99635 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00210 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47485 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47198 * 120.00237 * 8 6 4 11 11 H 1.48498 * 109.47682 * 240.00190 * 8 6 4 12 12 N 1.46499 * 109.47014 * 120.00332 * 2 1 3 13 13 C 1.34777 * 119.99665 * 275.27733 * 12 2 1 14 14 O 1.21483 * 120.00334 * 359.72053 * 13 12 2 15 15 C 1.48394 * 119.99555 * 179.72344 * 13 12 2 16 16 N 1.33117 * 120.55840 * 359.72121 * 15 13 12 17 17 C 1.31536 * 120.74679 * 179.71273 * 16 15 13 18 18 C 1.50699 * 119.02556 * 180.26679 * 17 16 15 19 19 C 1.53004 * 117.49960 * 189.04412 * 18 17 16 20 20 C 1.53003 * 117.49939 * 120.38579 * 18 17 16 21 21 N 1.31927 * 121.94749 * 0.57300 * 17 16 15 22 22 C 1.32139 * 121.05362 * 359.71942 * 21 17 16 23 23 C 1.38940 * 119.13058 * 359.97438 * 22 21 17 24 24 Br 1.89104 * 120.88291 * 179.97438 * 23 22 21 25 25 H 1.09000 * 109.47169 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47066 * 300.00185 * 1 2 3 27 27 H 1.09005 * 109.46722 * 59.99817 * 1 2 3 28 28 H 0.97000 * 120.00295 * 179.97438 * 7 6 4 29 29 H 0.97001 * 119.99790 * 94.99446 * 12 2 1 30 30 H 1.08994 * 115.55171 * 334.71580 * 18 17 16 31 31 H 1.09008 * 117.49436 * 0.02562 * 19 18 17 32 32 H 1.08995 * 117.49896 * 145.02018 * 19 18 17 33 33 H 1.08998 * 117.50084 * 214.98035 * 20 18 17 34 34 H 1.09007 * 117.49673 * 359.97438 * 20 18 17 35 35 H 1.08009 * 120.43501 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 3.1474 -2.2862 -3.6039 10 1 1.1678 -1.5864 -4.8166 11 1 3.1473 -0.1857 -4.8161 12 7 2.0184 -0.6907 1.1961 13 6 2.1418 -0.0197 2.3585 14 8 1.8529 1.1590 2.4131 15 6 2.6305 -0.7208 3.5715 16 7 2.9450 -2.0135 3.5256 17 6 3.3840 -2.6373 4.5972 18 6 3.7344 -4.0998 4.4999 19 6 4.0368 -4.8421 5.8031 20 6 5.1716 -4.5056 4.8325 21 7 3.5209 -2.0221 5.7562 22 6 3.2250 -0.7409 5.8869 23 6 2.7633 -0.0371 4.7814 24 35 2.3245 1.7976 4.9127 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 0.7088 1.1614 -3.4844 29 1 2.2490 -1.6319 1.1525 30 1 3.2246 -4.6539 3.7118 31 1 3.9819 -4.2726 6.7310 32 1 3.7264 -5.8846 5.8723 33 1 5.6072 -5.3268 4.2635 34 1 5.8638 -3.7146 5.1213 35 1 3.3412 -0.2470 6.8404 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291878012.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:31 Heat of formation + Delta-G solvation = 53.174528 kcal Electronic energy + Delta-G solvation = -20789.693129 eV Core-core repulsion = 17449.704454 eV Total energy + Delta-G solvation = -3339.988675 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.032 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.44547 -38.86106 -37.20628 -34.95665 -34.12426 -32.84227 -32.33245 -29.90857 -28.89740 -25.68746 -25.24962 -24.92084 -22.60413 -22.41723 -20.79578 -19.64340 -18.25265 -17.99529 -16.43624 -15.78435 -15.46476 -15.25554 -15.16464 -14.78489 -14.27726 -14.25329 -13.92124 -13.13365 -12.48268 -12.43884 -11.88896 -11.74762 -11.67035 -11.24190 -11.20409 -11.07416 -10.97636 -10.83417 -10.71013 -10.65707 -10.55126 -10.27110 -10.20441 -9.87380 -9.10832 -9.04879 -8.65127 -8.54845 -7.97998 -6.14099 -4.23057 0.28049 0.60794 1.48116 2.91564 3.23781 3.30747 3.33188 3.36951 3.53341 3.62999 3.81306 3.97052 4.32443 4.50307 4.57350 4.61529 4.75562 4.85334 5.07278 5.18772 5.42213 5.52029 5.56842 5.84725 5.93325 5.99207 6.51858 6.78785 6.92687 7.09435 7.33496 7.48814 7.65796 7.74285 7.87528 8.10475 8.54962 8.70515 8.96073 9.43879 10.92029 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.010953 B = 0.004386 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.834674 B = 6382.719071 C = 8620.107946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.053 0.947 4 C -0.533 4.533 5 H 0.063 0.937 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.283 1.283 12 N -0.676 5.676 13 C 0.540 3.460 14 O -0.510 6.510 15 C 0.177 3.823 16 N -0.480 5.480 17 C 0.356 3.644 18 C -0.104 4.104 19 C -0.152 4.152 20 C -0.153 4.153 21 N -0.504 5.504 22 C 0.182 3.818 23 C -0.174 4.174 24 Br 0.022 6.978 25 H 0.028 0.972 26 H 0.016 0.984 27 H 0.093 0.907 28 H 0.264 0.736 29 H 0.399 0.601 30 H 0.135 0.865 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.282 -6.020 18.790 20.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.071 0.929 4 C -0.571 4.571 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.209 1.209 12 N -0.324 5.324 13 C 0.320 3.680 14 O -0.386 6.386 15 C 0.026 3.974 16 N -0.196 5.196 17 C 0.089 3.911 18 C -0.124 4.124 19 C -0.190 4.190 20 C -0.191 4.191 21 N -0.219 5.219 22 C 0.012 3.988 23 C -0.260 4.260 24 Br 0.107 6.893 25 H 0.047 0.953 26 H 0.035 0.965 27 H 0.111 0.889 28 H 0.074 0.926 29 H 0.234 0.766 30 H 0.153 0.847 31 H 0.128 0.872 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.115 0.885 35 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 5.007 -5.288 18.554 19.932 hybrid contribution 0.246 -0.385 -0.863 0.976 sum 5.252 -5.673 17.691 19.307 Atomic orbital electron populations 1.22084 0.98043 0.99335 1.01113 1.18904 0.91276 0.94117 0.79552 0.92902 1.21231 1.32489 1.13316 0.90103 0.91861 1.24872 0.94760 0.94945 0.99043 1.69905 1.35853 1.22452 1.23846 0.86374 0.78623 0.79555 0.82454 1.19675 1.20848 1.20859 1.46517 1.62135 1.14326 1.09379 1.17733 0.80790 0.86742 0.82743 1.90919 1.50137 1.13972 1.83548 1.22150 0.91271 0.89312 0.94658 1.68269 1.11718 1.08133 1.31523 1.22258 0.89458 0.95815 0.83528 1.20689 1.01563 0.87673 1.02516 1.23054 1.01485 1.00604 0.93839 1.23016 0.90007 1.03364 1.02719 1.68123 1.17309 1.09651 1.26805 1.23343 0.88841 0.88977 0.97600 1.23838 1.07426 0.96991 0.97734 1.96823 1.91926 1.02797 1.97746 0.95332 0.96486 0.88886 0.92587 0.76640 0.84741 0.87188 0.87997 0.87646 0.88495 0.80119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.26 37.16 0.34 -3.31 16 2 C 0.26 6.68 2.56 -69.08 -0.18 6.51 16 3 H 0.05 1.52 7.58 -51.93 -0.39 1.13 16 4 C -0.53 -14.15 8.73 -34.44 -0.30 -14.46 16 5 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.66 11.32 55.43 0.63 -24.04 16 8 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 9 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.68 -14.74 5.06 -55.70 -0.28 -15.03 16 13 C 0.54 11.24 7.78 -12.08 -0.09 11.15 16 14 O -0.51 -11.63 13.34 5.38 0.07 -11.56 16 15 C 0.18 3.08 6.79 -82.62 -0.56 2.52 16 16 N -0.48 -7.74 9.59 -7.31 -0.07 -7.81 16 17 C 0.36 4.86 7.31 -157.30 -1.15 3.71 16 18 C -0.10 -1.10 6.23 -91.77 -0.57 -1.67 16 19 C -0.15 -1.24 10.01 -26.69 -0.27 -1.50 16 20 C -0.15 -1.30 10.24 -26.69 -0.27 -1.58 16 21 N -0.50 -6.38 9.32 -10.71 -0.10 -6.48 16 22 C 0.18 2.19 11.10 -17.16 -0.19 2.00 16 23 C -0.17 -2.61 6.30 -38.81 -0.24 -2.85 16 24 Br 0.02 0.33 30.63 -68.01 -2.08 -1.75 16 25 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.40 8.08 7.92 -40.82 -0.32 7.76 16 30 H 0.13 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.11 0.95 7.54 -51.92 -0.39 0.56 16 32 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.18 1.49 8.06 -52.48 -0.42 1.07 16 LS Contribution 323.80 15.07 4.88 4.88 Total: -1.00 -29.58 323.80 -9.48 -39.06 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -3.92 Total: 4.89 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -3.58 Total: 2.22 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: 0.18 Total: -53.34 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.07 Total: -11.56 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 35 Polarization: 0.33 SS G_CDS: -2.08 Total: -1.75 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.58 -9.48 -39.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291878012.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.231 kcal (2) G-P(sol) polarization free energy of solvation -29.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds