Wall clock time and date at job start Tue Mar 31 2020 22:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47058 * 2 1 4 4 C 1.50696 * 109.46920 * 240.00333 * 2 1 3 5 5 H 1.08002 * 120.00157 * 239.99968 * 4 2 1 6 6 C 1.37881 * 120.00447 * 60.00039 * 4 2 1 7 7 N 1.31510 * 119.99635 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00210 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47485 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47198 * 120.00237 * 8 6 4 11 11 H 1.48498 * 109.47682 * 240.00190 * 8 6 4 12 12 N 1.46499 * 109.47014 * 120.00332 * 2 1 3 13 13 C 1.34777 * 119.99665 * 275.27733 * 12 2 1 14 14 O 1.21483 * 120.00334 * 359.72053 * 13 12 2 15 15 C 1.48394 * 119.99555 * 179.72344 * 13 12 2 16 16 N 1.33117 * 120.55840 * 359.72121 * 15 13 12 17 17 C 1.31536 * 120.74679 * 179.71273 * 16 15 13 18 18 C 1.50699 * 119.02556 * 180.26679 * 17 16 15 19 19 C 1.53004 * 117.49960 * 189.04412 * 18 17 16 20 20 C 1.53003 * 117.49939 * 120.38579 * 18 17 16 21 21 N 1.31927 * 121.94749 * 0.57300 * 17 16 15 22 22 C 1.32139 * 121.05362 * 359.71942 * 21 17 16 23 23 C 1.38940 * 119.13058 * 359.97438 * 22 21 17 24 24 Br 1.89104 * 120.88291 * 179.97438 * 23 22 21 25 25 H 1.09000 * 109.47169 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47066 * 300.00185 * 1 2 3 27 27 H 1.09005 * 109.46722 * 59.99817 * 1 2 3 28 28 H 0.97000 * 120.00295 * 179.97438 * 7 6 4 29 29 H 0.97001 * 119.99790 * 94.99446 * 12 2 1 30 30 H 1.08994 * 115.55171 * 334.71580 * 18 17 16 31 31 H 1.09008 * 117.49436 * 0.02562 * 19 18 17 32 32 H 1.08995 * 117.49896 * 145.02018 * 19 18 17 33 33 H 1.08998 * 117.50084 * 214.98035 * 20 18 17 34 34 H 1.09007 * 117.49673 * 359.97438 * 20 18 17 35 35 H 1.08009 * 120.43501 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 3.1474 -2.2862 -3.6039 10 1 1.1678 -1.5864 -4.8166 11 1 3.1473 -0.1857 -4.8161 12 7 2.0184 -0.6907 1.1961 13 6 2.1418 -0.0197 2.3585 14 8 1.8529 1.1590 2.4131 15 6 2.6305 -0.7208 3.5715 16 7 2.9450 -2.0135 3.5256 17 6 3.3840 -2.6373 4.5972 18 6 3.7344 -4.0998 4.4999 19 6 4.0368 -4.8421 5.8031 20 6 5.1716 -4.5056 4.8325 21 7 3.5209 -2.0221 5.7562 22 6 3.2250 -0.7409 5.8869 23 6 2.7633 -0.0371 4.7814 24 35 2.3245 1.7976 4.9127 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 0.7088 1.1614 -3.4844 29 1 2.2490 -1.6319 1.1525 30 1 3.2246 -4.6539 3.7118 31 1 3.9819 -4.2726 6.7310 32 1 3.7264 -5.8846 5.8723 33 1 5.6072 -5.3268 4.2635 34 1 5.8638 -3.7146 5.1213 35 1 3.3412 -0.2470 6.8404 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291878012.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:31 Heat of formation + Delta-G solvation = 35.066630 kcal Electronic energy + Delta-G solvation = -20790.478347 eV Core-core repulsion = 17449.704454 eV Total energy + Delta-G solvation = -3340.773893 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.032 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.58469 -40.47726 -38.02440 -36.83921 -35.33210 -34.26348 -33.95877 -31.28225 -30.58312 -27.38265 -26.91889 -25.93600 -23.85204 -23.21633 -22.22461 -21.30124 -19.69317 -19.18009 -18.05117 -17.15758 -16.96548 -16.69073 -16.41147 -16.14860 -15.58950 -15.45340 -15.18013 -14.83546 -14.42902 -13.76286 -13.31899 -13.07288 -12.96526 -12.81256 -12.77218 -12.43145 -12.32950 -12.23793 -12.21631 -12.09084 -11.95142 -11.52494 -11.39621 -11.14846 -11.04520 -10.63282 -10.20534 -10.02299 -9.80512 -8.19132 -6.36206 -0.93888 -0.46808 0.32497 1.44101 1.45163 1.57220 1.61737 1.97237 2.36562 2.41058 2.52588 2.71648 3.08509 3.11515 3.29244 3.41612 3.68366 3.87553 4.09485 4.29030 4.30552 4.72044 4.81957 4.84305 4.90017 5.01182 5.04565 5.17074 5.33556 5.36375 5.39337 5.53972 5.64106 5.83827 6.05488 6.59215 6.68259 6.80003 7.18922 7.37871 8.87396 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.010953 B = 0.004386 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.834674 B = 6382.719071 C = 8620.107946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.271 3.729 3 H 0.011 0.989 4 C -0.548 4.548 5 H 0.069 0.931 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.972 3.028 9 H -0.263 1.263 10 H -0.277 1.277 11 H -0.282 1.282 12 N -0.678 5.678 13 C 0.538 3.462 14 O -0.536 6.536 15 C 0.156 3.844 16 N -0.498 5.498 17 C 0.353 3.647 18 C -0.131 4.131 19 C -0.133 4.133 20 C -0.144 4.144 21 N -0.495 5.495 22 C 0.200 3.800 23 C -0.180 4.180 24 Br 0.018 6.982 25 H 0.037 0.963 26 H 0.016 0.984 27 H 0.072 0.928 28 H 0.267 0.733 29 H 0.407 0.593 30 H 0.138 0.862 31 H 0.106 0.894 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.090 0.910 35 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.420 -8.193 20.125 22.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.168 3.832 3 H 0.028 0.972 4 C -0.586 4.586 5 H 0.087 0.913 6 C -0.182 4.182 7 N -0.552 5.552 8 Si 0.797 3.203 9 H -0.187 1.187 10 H -0.202 1.202 11 H -0.208 1.208 12 N -0.327 5.327 13 C 0.320 3.680 14 O -0.413 6.413 15 C 0.006 3.994 16 N -0.215 5.215 17 C 0.088 3.912 18 C -0.151 4.151 19 C -0.170 4.170 20 C -0.182 4.182 21 N -0.209 5.209 22 C 0.030 3.970 23 C -0.266 4.266 24 Br 0.103 6.897 25 H 0.056 0.944 26 H 0.035 0.965 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.243 0.757 30 H 0.155 0.845 31 H 0.125 0.875 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.108 0.892 35 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 6.154 -7.488 19.913 22.147 hybrid contribution -0.072 0.281 -1.158 1.193 sum 6.082 -7.208 18.755 20.993 Atomic orbital electron populations 1.21897 0.97797 0.99473 1.00003 1.18517 0.91409 0.92241 0.81030 0.97161 1.21501 1.32771 1.13581 0.90754 0.91309 1.25740 0.94774 0.95553 1.02103 1.70036 1.36759 1.23751 1.24668 0.85297 0.78153 0.78504 0.78393 1.18666 1.20244 1.20772 1.46267 1.62852 1.14556 1.09009 1.18181 0.79829 0.86574 0.83388 1.90891 1.50949 1.15178 1.84281 1.21571 0.93621 0.90318 0.93868 1.68224 1.12724 1.07571 1.32956 1.22895 0.88245 0.97041 0.83065 1.20881 1.03508 0.86084 1.04610 1.23156 1.00109 1.01348 0.92427 1.23119 0.88956 1.03488 1.02646 1.68283 1.16840 1.09716 1.26093 1.24018 0.86398 0.88523 0.98051 1.23970 1.07987 0.96895 0.97746 1.96816 1.92018 1.03207 1.97632 0.94394 0.96489 0.90971 0.92412 0.75747 0.84461 0.87516 0.85680 0.85731 0.89180 0.75979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.79 9.26 71.98 0.67 -6.13 16 2 C 0.27 14.24 2.56 44.25 0.11 14.36 16 3 H 0.01 0.64 7.58 -2.39 -0.02 0.62 16 4 C -0.55 -29.49 8.73 25.60 0.22 -29.27 16 5 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 6 C 0.02 1.01 5.30 84.66 0.45 1.46 16 7 N -0.91 -52.07 11.32 21.45 0.24 -51.83 16 8 Si 0.97 42.23 29.54 68.60 2.03 44.26 16 9 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 10 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 12 N -0.68 -30.40 5.06 -448.45 -2.27 -32.67 16 13 C 0.54 23.01 7.78 86.95 0.68 23.68 16 14 O -0.54 -25.29 13.34 -3.66 -0.05 -25.34 16 15 C 0.16 5.43 6.79 41.99 0.29 5.71 16 16 N -0.50 -15.79 9.59 -177.06 -1.70 -17.48 16 17 C 0.35 9.09 7.31 138.79 1.01 10.10 16 18 C -0.13 -2.48 6.23 -11.54 -0.07 -2.56 16 19 C -0.13 -1.74 10.01 30.62 0.31 -1.43 16 20 C -0.14 -2.05 10.24 30.62 0.31 -1.74 16 21 N -0.50 -11.31 9.32 -187.79 -1.75 -13.06 16 22 C 0.20 4.32 11.10 84.82 0.94 5.27 16 23 C -0.18 -5.22 6.30 22.77 0.14 -5.07 16 24 Br 0.02 0.54 30.63 -20.37 -0.62 -0.09 16 25 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.07 3.99 6.07 -2.38 -0.01 3.98 16 28 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 29 H 0.41 16.77 7.92 -92.71 -0.73 16.04 16 30 H 0.14 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.11 1.50 7.54 -2.38 -0.02 1.49 16 32 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.22 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -65.06 323.80 1.34 -63.72 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.40 Total: 18.11 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: 5.06 Total: 14.38 kcal Atomic # 7 Polarization: -109.57 SS G_CDS: -5.48 Total: -115.05 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.05 Total: -25.34 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Atomic # 35 Polarization: 0.54 SS G_CDS: -0.62 Total: -0.09 kcal Total: -65.06 1.34 -63.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291878012.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.783 kcal (2) G-P(sol) polarization free energy of solvation -65.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds