Wall clock time and date at job start Tue Mar 31 2020 22:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00062 * 2 1 4 4 H 1.48497 * 109.47343 * 270.00203 * 3 2 1 5 5 H 1.48510 * 109.46865 * 29.99806 * 3 2 1 6 6 H 1.48496 * 109.47391 * 149.99767 * 3 2 1 7 7 C 1.38805 * 120.00213 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00584 * 183.35032 * 7 2 1 9 9 N 1.36945 * 120.00205 * 3.35773 * 7 2 1 10 10 C 1.46504 * 119.99446 * 18.77399 * 9 7 2 11 11 C 1.50699 * 109.46823 * 270.00036 * 10 9 7 12 12 O 1.21274 * 120.00482 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99948 * 180.02562 * 11 10 9 14 14 C 1.39439 * 120.00095 * 185.06356 * 13 11 10 15 15 C 1.39032 * 119.68230 * 185.88673 * 14 13 11 16 16 C 1.38357 * 119.10887 * 179.79544 * 15 14 13 17 17 C 1.38910 * 118.48653 * 0.47117 * 16 15 14 18 18 Br 1.89095 * 120.35557 * 179.76868 * 17 16 15 19 19 C 1.38164 * 119.29214 * 359.75503 * 17 16 15 20 20 N 1.31936 * 120.82984 * 0.02562 * 19 17 16 21 21 C 1.46495 * 120.00075 * 198.77602 * 9 7 2 22 22 C 1.52998 * 117.50040 * 3.99069 * 21 9 7 23 23 C 1.52995 * 117.50008 * 295.32985 * 21 9 7 24 24 H 0.97004 * 120.00001 * 355.01510 * 1 2 3 25 25 H 1.08994 * 109.47324 * 29.99804 * 10 9 7 26 26 H 1.09004 * 109.46829 * 150.00603 * 10 9 7 27 27 H 0.96999 * 119.99399 * 5.06746 * 13 11 10 28 28 H 1.07997 * 120.44569 * 0.02562 * 15 14 13 29 29 H 1.07998 * 120.75841 * 180.20327 * 16 15 14 30 30 H 1.07995 * 119.58252 * 180.02562 * 19 17 16 31 31 H 1.08996 * 115.54622 * 149.66196 * 21 9 7 32 32 H 1.08995 * 117.49989 * 0.02562 * 22 21 9 33 33 H 1.09004 * 117.49520 * 145.02279 * 22 21 9 34 34 H 1.08999 * 117.49988 * 214.98345 * 23 21 9 35 35 H 1.09007 * 117.50125 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0889 -1.2029 0.0552 9 7 1.3274 -2.3871 -0.0684 10 6 -0.0566 -2.4080 -0.5484 11 6 -0.9950 -2.2252 0.6165 12 8 -0.5515 -2.0902 1.7372 13 7 -2.3273 -2.2117 0.4130 14 6 -3.1917 -1.9375 1.4722 15 6 -4.5652 -2.0454 1.2856 16 6 -5.4119 -1.7748 2.3459 17 6 -4.8532 -1.3941 3.5593 18 35 -5.9613 -1.0053 5.0415 19 6 -3.4792 -1.3027 3.6719 20 7 -2.6972 -1.5715 2.6438 21 6 1.9808 -3.6337 0.3378 22 6 3.3933 -3.5347 0.9175 23 6 3.1803 -4.1041 -0.4873 24 1 -0.4850 0.8369 0.0730 25 1 -0.2050 -1.6000 -1.2647 26 1 -0.2592 -3.3639 -1.0315 27 1 -2.6847 -2.3927 -0.4704 28 1 -4.9658 -2.3402 0.3269 29 1 -6.4829 -1.8534 2.2315 30 1 -3.0398 -1.0076 4.6132 31 1 1.3210 -4.3984 0.7477 32 1 3.8362 -2.5420 0.9971 33 1 3.6628 -4.2346 1.7086 34 1 3.3098 -5.1782 -0.6199 35 1 3.4831 -3.4862 -1.3327 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299578670.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:59 Heat of formation + Delta-G solvation = 64.539003 kcal Electronic energy + Delta-G solvation = -21319.908411 eV Core-core repulsion = 17980.412537 eV Total energy + Delta-G solvation = -3339.495875 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.032 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.54182 -39.81371 -38.39384 -35.68035 -35.16139 -33.72033 -32.51120 -32.24036 -30.01009 -28.31759 -25.80191 -24.88845 -23.68137 -22.99284 -21.78008 -21.17598 -19.20054 -18.16761 -17.81554 -17.54671 -16.82650 -16.40262 -16.13454 -15.93632 -15.60311 -15.41482 -14.68336 -14.61554 -14.11983 -14.03508 -13.63190 -13.06910 -12.91605 -12.78375 -12.61303 -12.44003 -12.16545 -12.15550 -11.91417 -11.52567 -11.42406 -11.09987 -10.98711 -10.75051 -10.70311 -10.49487 -9.79071 -9.02059 -8.64854 -7.88960 -5.25327 -0.00844 0.32318 0.61454 1.42582 1.45859 1.52012 2.20410 2.37311 2.54597 3.01050 3.21112 3.39722 3.47369 3.56498 3.86280 3.99609 4.04842 4.25415 4.41900 4.49845 4.53411 4.68584 4.79986 4.91568 4.92711 5.00667 5.05416 5.28492 5.32396 5.39611 5.49263 5.65937 5.94279 6.29651 6.55307 7.10889 7.29032 7.80635 8.02894 8.22460 9.14983 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.017858 B = 0.003174 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.592096 B = 8818.256795 C = 9451.654915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.043 4.043 3 Si 0.966 3.034 4 H -0.279 1.279 5 H -0.306 1.306 6 H -0.280 1.280 7 C -0.246 4.246 8 H 0.075 0.925 9 N -0.560 5.560 10 C 0.173 3.827 11 C 0.519 3.481 12 O -0.520 6.520 13 N -0.659 5.659 14 C 0.369 3.631 15 C -0.202 4.202 16 C -0.014 4.014 17 C -0.195 4.195 18 Br -0.034 7.034 19 C 0.147 3.853 20 N -0.516 5.516 21 C 0.100 3.900 22 C -0.198 4.198 23 C -0.190 4.190 24 H 0.242 0.758 25 H 0.100 0.900 26 H 0.072 0.928 27 H 0.425 0.575 28 H 0.180 0.820 29 H 0.179 0.821 30 H 0.155 0.845 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.111 0.889 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.923 -6.603 1.804 16.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.237 4.237 3 Si 0.796 3.204 4 H -0.205 1.205 5 H -0.233 1.233 6 H -0.206 1.206 7 C -0.375 4.375 8 H 0.093 0.907 9 N -0.277 5.277 10 C 0.043 3.957 11 C 0.306 3.694 12 O -0.390 6.390 13 N -0.306 5.306 14 C 0.137 3.863 15 C -0.227 4.227 16 C -0.041 4.041 17 C -0.278 4.278 18 Br 0.050 6.950 19 C -0.013 4.013 20 N -0.232 5.232 21 C -0.008 4.008 22 C -0.237 4.237 23 C -0.230 4.230 24 H 0.052 0.948 25 H 0.118 0.882 26 H 0.089 0.911 27 H 0.263 0.737 28 H 0.198 0.802 29 H 0.196 0.804 30 H 0.172 0.828 31 H 0.111 0.889 32 H 0.093 0.907 33 H 0.118 0.882 34 H 0.129 0.871 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.001 -6.148 3.064 15.595 hybrid contribution -0.133 1.230 -0.285 1.270 sum -14.134 -4.918 2.778 15.221 Atomic orbital electron populations 1.69688 1.05521 1.24877 1.56482 1.25445 0.96459 1.00319 1.01506 0.85283 0.77514 0.80177 0.77427 1.20513 1.23318 1.20570 1.19423 0.91181 0.84000 1.42906 0.90746 1.43493 1.09371 1.02388 1.72409 1.20713 0.81923 1.00443 0.92585 1.22537 0.81311 0.73142 0.92374 1.90589 1.75909 1.45569 1.26919 1.44146 1.06590 1.69079 1.10823 1.19257 0.89066 0.90378 0.87645 1.21863 0.90101 1.07878 1.02827 1.21647 1.01909 0.91405 0.89168 1.22794 0.94772 1.14039 0.96233 1.96640 1.64839 1.94055 1.39439 1.22788 0.88871 0.92797 0.96892 1.67815 1.39921 1.15120 1.00338 1.21182 0.88330 0.90033 1.01254 1.23098 1.01312 1.01777 0.97487 1.23409 1.05360 1.00682 0.93556 0.94755 0.88200 0.91064 0.73659 0.80228 0.80381 0.82765 0.88906 0.90745 0.88184 0.87086 0.90378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.99 8.15 21.65 0.18 -50.81 16 2 C -0.04 -2.36 5.29 84.86 0.45 -1.91 16 3 Si 0.97 46.08 29.56 68.60 2.03 48.11 16 4 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.31 -15.22 7.11 99.48 0.71 -14.51 16 6 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 7 C -0.25 -13.19 9.13 84.03 0.77 -12.43 16 8 H 0.07 3.97 6.01 -2.91 -0.02 3.96 16 9 N -0.56 -27.17 2.36 -682.36 -1.61 -28.77 16 10 C 0.17 7.59 5.47 85.63 0.47 8.06 16 11 C 0.52 23.86 5.66 87.66 0.50 24.35 16 12 O -0.52 -29.29 14.38 -3.01 -0.04 -29.33 16 13 N -0.66 -23.66 5.39 -308.44 -1.66 -25.32 16 14 C 0.37 13.20 7.41 132.91 0.98 14.18 16 15 C -0.20 -4.94 9.94 22.49 0.22 -4.71 16 16 C -0.01 -0.32 9.93 22.46 0.22 -0.09 16 17 C -0.19 -5.24 6.25 22.41 0.14 -5.10 16 18 Br -0.03 -0.74 33.73 -20.37 -0.69 -1.42 16 19 C 0.15 5.10 10.93 84.66 0.93 6.03 16 20 N -0.52 -21.94 7.93 -192.96 -1.53 -23.47 16 21 C 0.10 4.16 6.56 44.99 0.30 4.45 16 22 C -0.20 -7.62 9.78 30.62 0.30 -7.32 16 23 C -0.19 -6.49 10.35 30.62 0.32 -6.18 16 24 H 0.24 13.79 8.32 -92.71 -0.77 13.02 16 25 H 0.10 4.71 6.35 -2.39 -0.02 4.69 16 26 H 0.07 2.53 8.07 -2.39 -0.02 2.51 16 27 H 0.42 11.16 8.70 -92.71 -0.81 10.35 16 28 H 0.18 2.79 8.06 -2.91 -0.02 2.77 16 29 H 0.18 2.54 8.06 -2.91 -0.02 2.52 16 30 H 0.16 5.08 8.06 -2.91 -0.02 5.06 16 31 H 0.09 3.68 8.14 -2.39 -0.02 3.66 16 32 H 0.07 3.21 6.22 -2.39 -0.01 3.20 16 33 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 34 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 35 H 0.08 2.85 8.14 -2.38 -0.02 2.83 16 Total: -1.00 -72.36 319.93 2.59 -69.77 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: 0.33 Total: 21.91 kcal Atomic # 6 Polarization: 13.75 SS G_CDS: 5.59 Total: 19.34 kcal Atomic # 7 Polarization: -123.75 SS G_CDS: -4.62 Total: -128.38 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -0.04 Total: -29.33 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Atomic # 35 Polarization: -0.74 SS G_CDS: -0.69 Total: -1.42 kcal Total: -72.36 2.59 -69.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299578670.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.314 kcal (2) G-P(sol) polarization free energy of solvation -72.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds