Wall clock time and date at job start Tue Mar 31 2020 22:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35919 * 117.00689 * 2 1 4 4 C 1.38751 * 120.03842 * 5.37132 * 3 2 1 5 5 C 1.38124 * 119.94892 * 180.26994 * 4 3 2 6 6 C 1.38362 * 120.04891 * 359.77231 * 5 4 3 7 7 Br 1.89100 * 119.95713 * 179.97438 * 6 5 4 8 8 C 1.38321 * 120.08718 * 359.97438 * 6 5 4 9 9 C 1.38160 * 120.04958 * 359.97438 * 8 6 5 10 10 C 1.50706 * 120.02310 * 179.97438 * 9 8 6 11 11 C 1.50695 * 115.55212 * 245.51623 * 10 9 8 12 12 O 1.21291 * 120.00489 * 245.48929 * 11 10 9 13 13 N 1.34776 * 119.99973 * 65.48209 * 11 10 9 14 14 C 1.37097 * 120.00245 * 184.98527 * 13 11 10 15 15 H 1.08002 * 120.00268 * 5.06968 * 14 13 11 16 16 C 1.38953 * 120.00024 * 185.07397 * 14 13 11 17 17 N 1.31414 * 119.99750 * 184.59551 * 16 14 13 18 18 Si 1.86794 * 119.99998 * 4.59078 * 16 14 13 19 19 H 1.48496 * 109.47274 * 93.97919 * 18 16 14 20 20 H 1.48506 * 109.46993 * 213.97590 * 18 16 14 21 21 H 1.48503 * 109.47455 * 333.97260 * 18 16 14 22 22 C 1.52999 * 117.49513 * 99.85295 * 10 9 8 23 23 C 1.52993 * 117.49774 * 31.19264 * 10 9 8 24 24 H 1.09007 * 109.46784 * 295.16102 * 1 2 3 25 25 H 1.09000 * 109.46843 * 55.15420 * 1 2 3 26 26 H 1.08993 * 109.47373 * 175.15852 * 1 2 3 27 27 H 1.08000 * 120.02571 * 0.02562 * 4 3 2 28 28 H 1.07999 * 119.97211 * 179.75059 * 5 4 3 29 29 H 1.08009 * 119.97664 * 180.02562 * 8 6 5 30 30 H 0.96997 * 120.00221 * 4.99405 * 13 11 10 31 31 H 0.97005 * 119.99761 * 179.97438 * 17 16 14 32 32 H 1.09004 * 117.49978 * 359.97438 * 22 10 9 33 33 H 1.08996 * 117.50233 * 145.02287 * 22 10 9 34 34 H 1.09005 * 117.49665 * 214.97555 * 23 10 9 35 35 H 1.09003 * 117.50088 * 359.97030 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2110 0.0000 4 6 1.2961 2.3728 0.1124 5 6 1.9248 3.6027 0.1066 6 6 3.3018 3.6764 -0.0065 7 35 4.1597 5.3616 -0.0149 8 6 4.0517 2.5191 -0.1134 9 6 3.4269 1.2868 -0.1069 10 6 4.2445 0.0262 -0.2240 11 6 4.0216 -0.7789 -1.4782 12 8 3.5313 -1.8862 -1.4090 13 7 4.3669 -0.2687 -2.6769 14 6 4.0714 -0.9563 -3.8255 15 1 3.4906 -1.8655 -3.7764 16 6 4.5193 -0.4836 -5.0530 17 7 4.1609 -1.0914 -6.1616 18 14 5.6306 1.0160 -5.1272 19 1 7.0498 0.5796 -5.1529 20 1 5.3299 1.7946 -6.3555 21 1 5.3956 1.8661 -3.9325 22 6 4.5467 -0.7419 1.0642 23 6 5.6575 0.0436 0.3625 24 1 -0.3633 0.4370 0.9302 25 1 -0.3633 0.5872 -0.8434 26 1 -0.3634 -1.0239 -0.0867 27 1 0.2212 2.3158 0.2005 28 1 1.3409 4.5075 0.1901 29 1 5.1266 2.5787 -0.2012 30 1 4.8247 0.5850 -2.7269 31 1 4.4733 -0.7612 -7.0186 32 1 4.1546 -0.3353 1.9964 33 1 4.5848 -1.8296 1.0045 34 1 6.4258 -0.5276 -0.1586 35 1 5.9959 0.9670 0.8327 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416143705.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:28 Heat of formation + Delta-G solvation = -11.686607 kcal Electronic energy + Delta-G solvation = -21663.989911 eV Core-core repulsion = 18288.895895 eV Total energy + Delta-G solvation = -3375.094016 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.026 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.52083 -38.67433 -37.43606 -35.89113 -33.87852 -31.80791 -31.58339 -30.89886 -28.96818 -27.03560 -25.73482 -23.77647 -22.50545 -21.48926 -21.43297 -19.07078 -18.44299 -17.67706 -16.51022 -16.00854 -15.65460 -15.26454 -14.96850 -14.54845 -14.48072 -13.89304 -13.77236 -13.11543 -13.03618 -12.94712 -12.54883 -12.15516 -11.94952 -11.75334 -11.57476 -11.26405 -11.18422 -11.03890 -10.52290 -10.47532 -10.32434 -10.20866 -10.03018 -9.96034 -9.52457 -9.04024 -8.47276 -8.12845 -7.98034 -6.29595 -3.79503 1.16264 1.17476 1.62235 3.06039 3.11318 3.18287 3.35296 3.53185 3.62267 4.07361 4.13164 4.52613 4.63932 4.72337 4.96666 5.02460 5.16072 5.21603 5.26017 5.32623 5.46181 5.51007 5.56445 5.60234 5.82652 5.85207 5.96773 6.08253 6.15382 6.27393 6.29286 6.43360 6.57870 7.43439 7.61028 8.17912 8.63819 8.97587 9.47030 9.89151 10.83393 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.010131 B = 0.005517 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.079610 B = 5073.753988 C = 6405.668593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.285 6.285 3 C 0.165 3.835 4 C -0.207 4.207 5 C -0.053 4.053 6 C -0.130 4.130 7 Br -0.059 7.059 8 C -0.047 4.047 9 C -0.066 4.066 10 C -0.099 4.099 11 C 0.495 3.505 12 O -0.563 6.563 13 N -0.584 5.584 14 C -0.302 4.302 15 H 0.119 0.881 16 C 0.043 3.957 17 N -0.881 5.881 18 Si 0.876 3.124 19 H -0.270 1.270 20 H -0.276 1.276 21 H -0.268 1.268 22 C -0.130 4.130 23 C -0.169 4.169 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.102 0.898 27 H 0.137 0.863 28 H 0.133 0.867 29 H 0.140 0.860 30 H 0.372 0.628 31 H 0.273 0.727 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.488 13.773 15.583 20.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.196 6.196 3 C 0.117 3.883 4 C -0.227 4.227 5 C -0.073 4.073 6 C -0.209 4.209 7 Br 0.026 6.974 8 C -0.067 4.067 9 C -0.068 4.068 10 C -0.102 4.102 11 C 0.280 3.720 12 O -0.445 6.445 13 N -0.222 5.222 14 C -0.430 4.430 15 H 0.136 0.864 16 C -0.160 4.160 17 N -0.521 5.521 18 Si 0.703 3.297 19 H -0.195 1.195 20 H -0.202 1.202 21 H -0.194 1.194 22 C -0.167 4.167 23 C -0.206 4.206 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.121 0.879 27 H 0.155 0.845 28 H 0.151 0.849 29 H 0.157 0.843 30 H 0.206 0.794 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.434 13.425 15.354 20.540 hybrid contribution 0.272 1.122 -0.391 1.218 sum -2.162 14.547 14.964 20.981 Atomic orbital electron populations 1.23116 0.78628 1.04450 1.00776 1.86364 1.20961 1.25308 1.86943 1.18990 0.91686 0.84930 0.92660 1.21202 1.00407 0.91613 1.09478 1.20806 0.92304 0.97777 0.96366 1.21463 0.94929 0.91070 1.13477 1.96653 1.79755 1.22977 1.98047 1.20804 1.00287 0.89391 0.96216 1.18251 0.90341 0.93080 1.05152 1.19928 0.98039 0.95754 0.96524 1.18447 0.84285 0.86679 0.82555 1.90542 1.47833 1.20312 1.85829 1.42209 1.53617 1.20630 1.05763 1.19427 1.32170 1.09395 0.82038 0.86373 1.25022 0.97865 0.98047 0.95055 1.69630 1.44228 1.40536 0.97658 0.86696 0.81793 0.82858 0.78362 1.19545 1.20151 1.19380 1.22860 1.00325 0.99758 0.93743 1.23158 0.91073 1.02806 1.03591 0.92952 0.92523 0.87936 0.84511 0.84938 0.84273 0.79412 0.91659 0.88754 0.87572 0.87957 0.88364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.82 101.05 0.99 1.30 16 2 O -0.28 -4.88 9.59 -19.48 -0.19 -5.07 16 3 C 0.16 2.65 6.59 -39.22 -0.26 2.40 16 4 C -0.21 -2.69 9.03 -39.43 -0.36 -3.05 16 5 C -0.05 -0.65 9.78 -39.58 -0.39 -1.03 16 6 C -0.13 -1.74 6.22 -39.51 -0.25 -1.98 16 7 Br -0.06 -0.70 33.70 -68.01 -2.29 -2.99 16 8 C -0.05 -0.69 8.96 -39.58 -0.35 -1.04 16 9 C -0.07 -1.10 5.13 -104.48 -0.54 -1.64 16 10 C -0.10 -1.79 1.69 -156.82 -0.26 -2.06 16 11 C 0.50 11.78 6.58 -10.99 -0.07 11.71 16 12 O -0.56 -15.54 16.30 5.55 0.09 -15.45 16 13 N -0.58 -14.57 5.06 -10.96 -0.06 -14.62 16 14 C -0.30 -8.70 10.14 -14.93 -0.15 -8.85 16 15 H 0.12 3.86 7.42 -52.49 -0.39 3.47 16 16 C 0.04 1.20 5.50 -17.47 -0.10 1.11 16 17 N -0.88 -25.97 13.96 55.50 0.77 -25.19 16 18 Si 0.88 20.08 27.99 -169.99 -4.76 15.32 16 19 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.27 -5.68 6.17 56.52 0.35 -5.33 16 22 C -0.13 -2.02 9.76 -26.69 -0.26 -2.29 16 23 C -0.17 -2.47 9.43 -26.70 -0.25 -2.73 16 24 H 0.05 0.48 7.71 -51.93 -0.40 0.08 16 25 H 0.06 0.64 7.62 -51.93 -0.40 0.25 16 26 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 27 H 0.14 1.39 6.33 -52.49 -0.33 1.06 16 28 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.14 1.83 7.02 -52.48 -0.37 1.46 16 30 H 0.37 8.49 5.65 -40.82 -0.23 8.26 16 31 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.11 1.78 8.00 -51.93 -0.42 1.36 16 34 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 35 H 0.10 1.17 7.13 -51.93 -0.37 0.80 16 LS Contribution 323.29 15.07 4.87 4.87 Total: -1.00 -33.21 323.29 -7.58 -40.78 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -3.78 Total: 10.48 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -2.24 Total: -8.15 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.72 Total: -39.81 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.10 Total: -20.51 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -4.76 Total: 15.32 kcal Atomic # 35 Polarization: -0.70 SS G_CDS: -2.29 Total: -2.99 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.21 -7.58 -40.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416143705.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.098 kcal (2) G-P(sol) polarization free energy of solvation -33.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds