Wall clock time and date at job start Tue Mar 31 2020 22:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35919 * 117.00689 * 2 1 4 4 C 1.38751 * 120.03842 * 5.37132 * 3 2 1 5 5 C 1.38124 * 119.94892 * 180.26994 * 4 3 2 6 6 C 1.38362 * 120.04891 * 359.77231 * 5 4 3 7 7 Br 1.89100 * 119.95713 * 179.97438 * 6 5 4 8 8 C 1.38321 * 120.08718 * 359.97438 * 6 5 4 9 9 C 1.38160 * 120.04958 * 359.97438 * 8 6 5 10 10 C 1.50706 * 120.02310 * 179.97438 * 9 8 6 11 11 C 1.50695 * 115.55212 * 245.51623 * 10 9 8 12 12 O 1.21291 * 120.00489 * 245.48929 * 11 10 9 13 13 N 1.34776 * 119.99973 * 65.48209 * 11 10 9 14 14 C 1.37097 * 120.00245 * 184.98527 * 13 11 10 15 15 H 1.08002 * 120.00268 * 5.06968 * 14 13 11 16 16 C 1.38953 * 120.00024 * 185.07397 * 14 13 11 17 17 N 1.31414 * 119.99750 * 184.59551 * 16 14 13 18 18 Si 1.86794 * 119.99998 * 4.59078 * 16 14 13 19 19 H 1.48496 * 109.47274 * 93.97919 * 18 16 14 20 20 H 1.48506 * 109.46993 * 213.97590 * 18 16 14 21 21 H 1.48503 * 109.47455 * 333.97260 * 18 16 14 22 22 C 1.52999 * 117.49513 * 99.85295 * 10 9 8 23 23 C 1.52993 * 117.49774 * 31.19264 * 10 9 8 24 24 H 1.09007 * 109.46784 * 295.16102 * 1 2 3 25 25 H 1.09000 * 109.46843 * 55.15420 * 1 2 3 26 26 H 1.08993 * 109.47373 * 175.15852 * 1 2 3 27 27 H 1.08000 * 120.02571 * 0.02562 * 4 3 2 28 28 H 1.07999 * 119.97211 * 179.75059 * 5 4 3 29 29 H 1.08009 * 119.97664 * 180.02562 * 8 6 5 30 30 H 0.96997 * 120.00221 * 4.99405 * 13 11 10 31 31 H 0.97005 * 119.99761 * 179.97438 * 17 16 14 32 32 H 1.09004 * 117.49978 * 359.97438 * 22 10 9 33 33 H 1.08996 * 117.50233 * 145.02287 * 22 10 9 34 34 H 1.09005 * 117.49665 * 214.97555 * 23 10 9 35 35 H 1.09003 * 117.50088 * 359.97030 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2110 0.0000 4 6 1.2961 2.3728 0.1124 5 6 1.9248 3.6027 0.1066 6 6 3.3018 3.6764 -0.0065 7 35 4.1597 5.3616 -0.0149 8 6 4.0517 2.5191 -0.1134 9 6 3.4269 1.2868 -0.1069 10 6 4.2445 0.0262 -0.2240 11 6 4.0216 -0.7789 -1.4782 12 8 3.5313 -1.8862 -1.4090 13 7 4.3669 -0.2687 -2.6769 14 6 4.0714 -0.9563 -3.8255 15 1 3.4906 -1.8655 -3.7764 16 6 4.5193 -0.4836 -5.0530 17 7 4.1609 -1.0914 -6.1616 18 14 5.6306 1.0160 -5.1272 19 1 7.0498 0.5796 -5.1529 20 1 5.3299 1.7946 -6.3555 21 1 5.3956 1.8661 -3.9325 22 6 4.5467 -0.7419 1.0642 23 6 5.6575 0.0436 0.3625 24 1 -0.3633 0.4370 0.9302 25 1 -0.3633 0.5872 -0.8434 26 1 -0.3634 -1.0239 -0.0867 27 1 0.2212 2.3158 0.2005 28 1 1.3409 4.5075 0.1901 29 1 5.1266 2.5787 -0.2012 30 1 4.8247 0.5850 -2.7269 31 1 4.4733 -0.7612 -7.0186 32 1 4.1546 -0.3353 1.9964 33 1 4.5848 -1.8296 1.0045 34 1 6.4258 -0.5276 -0.1586 35 1 5.9959 0.9670 0.8327 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416143705.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:28 Heat of formation + Delta-G solvation = -33.686648 kcal Electronic energy + Delta-G solvation = -21664.943905 eV Core-core repulsion = 18288.895895 eV Total energy + Delta-G solvation = -3376.048010 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.026 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.71030 -40.27567 -38.62691 -37.32323 -35.95823 -33.72093 -32.79161 -31.95610 -29.96282 -28.03902 -27.64020 -25.17307 -23.67212 -22.93832 -22.57731 -21.01687 -19.97502 -19.03869 -17.96115 -17.17093 -16.98551 -16.73881 -16.48114 -15.78364 -15.66772 -15.47589 -15.00021 -14.80689 -14.70929 -14.27738 -14.07896 -13.73175 -13.07546 -13.01721 -12.80511 -12.55653 -12.43514 -12.38557 -12.16739 -11.99567 -11.62467 -11.58004 -11.36313 -11.23678 -11.17563 -10.50170 -10.25299 -9.92197 -9.10083 -8.44745 -6.04003 0.10930 0.14472 0.65014 1.25407 1.30461 1.38837 1.87590 2.18353 2.33279 2.48019 2.67347 2.97418 3.12342 3.46364 3.74132 3.93402 3.95211 4.07730 4.12246 4.26733 4.30351 4.35710 4.44523 4.65162 4.68083 4.69674 4.88729 4.96101 4.98791 5.13040 5.19717 5.23626 5.52856 5.55962 5.92394 6.39590 6.56293 6.85035 7.37933 7.94147 8.72752 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.010131 B = 0.005517 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.079610 B = 5073.753988 C = 6405.668593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.325 6.325 3 C 0.140 3.860 4 C -0.202 4.202 5 C -0.046 4.046 6 C -0.136 4.136 7 Br -0.041 7.041 8 C -0.048 4.048 9 C -0.089 4.089 10 C -0.116 4.116 11 C 0.498 3.502 12 O -0.613 6.613 13 N -0.585 5.585 14 C -0.325 4.325 15 H 0.057 0.943 16 C -0.008 4.008 17 N -0.929 5.929 18 Si 0.954 3.046 19 H -0.257 1.257 20 H -0.269 1.269 21 H -0.237 1.237 22 C -0.127 4.127 23 C -0.141 4.141 24 H 0.085 0.915 25 H 0.060 0.940 26 H 0.100 0.900 27 H 0.163 0.837 28 H 0.162 0.838 29 H 0.154 0.846 30 H 0.386 0.614 31 H 0.280 0.720 32 H 0.119 0.881 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.418 17.772 17.240 24.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.237 6.237 3 C 0.093 3.907 4 C -0.221 4.221 5 C -0.065 4.065 6 C -0.216 4.216 7 Br 0.044 6.956 8 C -0.067 4.067 9 C -0.091 4.091 10 C -0.120 4.120 11 C 0.286 3.714 12 O -0.498 6.498 13 N -0.225 5.225 14 C -0.454 4.454 15 H 0.075 0.925 16 C -0.207 4.207 17 N -0.570 5.570 18 Si 0.775 3.225 19 H -0.182 1.182 20 H -0.193 1.193 21 H -0.161 1.161 22 C -0.164 4.164 23 C -0.178 4.178 24 H 0.103 0.897 25 H 0.079 0.921 26 H 0.119 0.881 27 H 0.180 0.820 28 H 0.179 0.821 29 H 0.171 0.829 30 H 0.222 0.778 31 H 0.089 0.911 32 H 0.137 0.863 33 H 0.103 0.897 34 H 0.117 0.883 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.367 17.436 17.035 24.415 hybrid contribution -0.176 -0.194 -0.867 0.906 sum -1.543 17.242 16.168 23.687 Atomic orbital electron populations 1.23344 0.76755 1.04935 1.02649 1.86301 1.23245 1.26739 1.87443 1.19338 0.92108 0.85498 0.93784 1.21485 1.01614 0.90809 1.08231 1.21186 0.92288 0.98492 0.94569 1.21663 0.95492 0.91577 1.12848 1.96679 1.79525 1.21430 1.97981 1.20941 1.01099 0.88902 0.95779 1.18237 0.90557 0.92821 1.07479 1.19639 1.01524 0.96710 0.94101 1.19518 0.81645 0.86339 0.83947 1.90505 1.49308 1.22979 1.86993 1.42047 1.54411 1.20966 1.05070 1.18999 1.33238 1.08632 0.84508 0.92524 1.25991 0.99046 1.01985 0.93717 1.69792 1.45625 1.42916 0.98621 0.85495 0.79191 0.78076 0.79751 1.18159 1.19348 1.16119 1.22916 1.00970 0.98735 0.93825 1.23332 0.89146 1.03833 1.01514 0.89693 0.92106 0.88117 0.81983 0.82083 0.82856 0.77828 0.91067 0.86259 0.89685 0.88299 0.84494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.82 113.37 1.11 1.53 16 2 O -0.32 -11.28 9.59 -92.64 -0.89 -12.17 16 3 C 0.14 4.34 6.59 22.50 0.15 4.49 16 4 C -0.20 -4.71 9.03 22.37 0.20 -4.50 16 5 C -0.05 -0.95 9.78 22.27 0.22 -0.74 16 6 C -0.14 -3.14 6.22 22.32 0.14 -3.00 16 7 Br -0.04 -0.81 33.70 -20.37 -0.69 -1.49 16 8 C -0.05 -1.23 8.96 22.27 0.20 -1.03 16 9 C -0.09 -2.81 5.13 -19.77 -0.10 -2.91 16 10 C -0.12 -4.14 1.69 -53.68 -0.09 -4.23 16 11 C 0.50 24.46 6.58 87.66 0.58 25.03 16 12 O -0.61 -36.03 16.30 -3.06 -0.05 -36.08 16 13 N -0.58 -29.76 5.06 -306.99 -1.55 -31.31 16 14 C -0.32 -19.70 10.14 84.04 0.85 -18.85 16 15 H 0.06 4.05 7.42 -2.91 -0.02 4.02 16 16 C -0.01 -0.47 5.50 84.93 0.47 0.00 16 17 N -0.93 -56.75 13.96 21.66 0.30 -56.45 16 18 Si 0.95 40.68 27.99 68.60 1.92 42.60 16 19 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 20 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 21 H -0.24 -8.83 6.17 99.48 0.61 -8.22 16 22 C -0.13 -3.87 9.76 30.62 0.30 -3.57 16 23 C -0.14 -3.79 9.43 30.62 0.29 -3.50 16 24 H 0.08 1.41 7.71 -2.38 -0.02 1.39 16 25 H 0.06 1.35 7.62 -2.39 -0.02 1.33 16 26 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.16 2.79 6.33 -2.91 -0.02 2.77 16 28 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 29 H 0.15 3.38 7.02 -2.91 -0.02 3.36 16 30 H 0.39 17.16 5.65 -92.71 -0.52 16.63 16 31 H 0.28 15.58 8.31 -92.70 -0.77 14.81 16 32 H 0.12 2.99 8.14 -2.38 -0.02 2.97 16 33 H 0.08 2.93 8.00 -2.39 -0.02 2.91 16 34 H 0.10 2.73 8.14 -2.38 -0.02 2.71 16 35 H 0.14 2.63 7.13 -2.39 -0.02 2.61 16 Total: -1.00 -78.22 323.29 3.87 -74.34 By element: Atomic # 1 Polarization: 31.33 SS G_CDS: 0.52 Total: 31.85 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: 4.31 Total: -11.28 kcal Atomic # 7 Polarization: -86.51 SS G_CDS: -1.25 Total: -87.76 kcal Atomic # 8 Polarization: -47.31 SS G_CDS: -0.94 Total: -48.25 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 1.92 Total: 42.60 kcal Atomic # 35 Polarization: -0.81 SS G_CDS: -0.69 Total: -1.49 kcal Total: -78.22 3.87 -74.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416143705.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.655 kcal (2) G-P(sol) polarization free energy of solvation -78.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds