Wall clock time and date at job start Tue Mar 31 2020 22:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46510 * 120.00023 * 2 1 4 4 C 1.53005 * 109.46838 * 275.42601 * 3 2 1 5 5 F 1.39897 * 109.47249 * 299.99750 * 4 3 2 6 6 F 1.39899 * 109.46996 * 59.99986 * 4 3 2 7 7 S 1.65593 * 120.00270 * 179.97438 * 2 1 3 8 8 O 1.42098 * 106.40747 * 149.00982 * 7 2 1 9 9 O 1.42103 * 106.40229 * 16.08480 * 7 2 1 10 10 C 1.76204 * 107.21955 * 262.54682 * 7 2 1 11 11 C 1.38638 * 119.75897 * 247.82210 * 10 7 2 12 12 C 1.37600 * 120.25784 * 180.29157 * 11 10 7 13 13 C 1.40742 * 119.77768 * 359.73322 * 12 11 10 14 14 C 1.41393 * 120.23618 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99513 * 149.65496 * 14 13 12 16 16 C 1.39940 * 120.00235 * 329.64901 * 14 13 12 17 17 N 1.30826 * 119.99974 * 165.79719 * 16 14 13 18 18 Si 1.86802 * 120.00088 * 345.79599 * 16 14 13 19 19 H 1.48496 * 109.47080 * 88.98501 * 18 16 14 20 20 H 1.48500 * 109.47244 * 208.98593 * 18 16 14 21 21 H 1.48496 * 109.46971 * 328.98344 * 18 16 14 22 22 C 1.40674 * 119.52282 * 359.97438 * 13 12 11 23 23 C 1.37760 * 119.73108 * 0.02562 * 22 13 12 24 24 Cl 1.73602 * 119.88895 * 179.97438 * 23 22 13 25 25 H 1.08994 * 109.47490 * 270.00296 * 1 2 3 26 26 H 1.09006 * 109.47090 * 30.00814 * 1 2 3 27 27 H 1.09001 * 109.46826 * 150.00032 * 1 2 3 28 28 H 1.08998 * 109.46989 * 35.42254 * 3 2 1 29 29 H 1.08997 * 109.47339 * 155.42696 * 3 2 1 30 30 H 1.09004 * 109.46816 * 179.97438 * 4 3 2 31 31 H 1.07993 * 119.86678 * 0.02562 * 11 10 7 32 32 H 1.08003 * 120.10848 * 179.70017 * 12 11 10 33 33 H 0.97000 * 120.00165 * 179.97438 * 17 16 14 34 34 H 1.07995 * 120.13812 * 180.02562 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3343 1.7786 -1.4361 5 9 3.0320 0.8374 -2.2006 6 9 1.0623 1.9745 -1.9846 7 16 2.2930 -1.4340 0.0006 8 8 3.5056 -1.1976 -0.7013 9 8 1.3593 -2.4367 -0.3766 10 6 2.7429 -1.7759 1.6696 11 6 4.0775 -1.7414 2.0434 12 6 4.4409 -2.0125 3.3426 13 6 3.4517 -2.3203 4.2954 14 6 3.8142 -2.5999 5.6331 15 1 3.1354 -2.3593 6.4380 16 6 5.0523 -3.1884 5.9142 17 7 5.5101 -3.1955 7.1398 18 14 6.0514 -3.9641 4.5396 19 1 6.9336 -2.9375 3.9288 20 1 6.8814 -5.0650 5.0913 21 1 5.1336 -4.5064 3.5059 22 6 2.0998 -2.3466 3.9073 23 6 1.7584 -2.0720 2.6013 24 17 0.0914 -2.1040 2.1178 25 1 -0.3634 0.0001 1.0276 26 1 -0.3633 0.8900 -0.5140 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6539 2.0022 0.5956 29 1 3.1885 1.1162 0.4273 30 1 2.8790 2.7229 -1.4361 31 1 4.8351 -1.5051 1.3111 32 1 5.4817 -1.9897 3.6300 33 1 6.3681 -3.6038 7.3347 34 1 1.3327 -2.5811 4.6303 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451166210.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:41 Heat of formation + Delta-G solvation = -178.930342 kcal Electronic energy + Delta-G solvation = -25861.385899 eV Core-core repulsion = 21581.990677 eV Total energy + Delta-G solvation = -4279.395222 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 339.029 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.73520 -47.76656 -39.87833 -38.29079 -37.55637 -37.27142 -36.78632 -35.79772 -32.75109 -31.59855 -30.87478 -27.73781 -26.80957 -23.88124 -23.68109 -23.08933 -20.16695 -19.72028 -19.20395 -18.66309 -18.30952 -17.75816 -17.46421 -17.30656 -16.74198 -16.36887 -16.04966 -15.33647 -15.16586 -14.88840 -14.77753 -14.73331 -14.64684 -14.21478 -14.14208 -13.92741 -13.59486 -13.47250 -13.33406 -13.08967 -12.93539 -12.81710 -12.72349 -12.63266 -12.60580 -12.11609 -12.04803 -11.97679 -11.78059 -11.40512 -11.15759 -10.13160 -10.02688 -9.63090 -9.19224 -6.89819 -0.51270 0.06886 0.53894 1.05899 1.19135 1.32592 1.40629 1.92397 1.99726 2.26912 2.79755 3.06282 3.12252 3.41981 3.48735 3.58446 3.83328 4.03475 4.17229 4.34631 4.51726 4.55861 4.58001 4.62515 4.70910 4.87607 4.95733 4.97106 5.09683 5.20056 5.26812 5.53921 5.59610 5.80536 6.02334 6.34002 6.45246 7.84824 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.018687 B = 0.004375 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.990159 B = 6397.867039 C = 7048.485929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.996 5.996 3 C 0.066 3.934 4 C 0.230 3.770 5 F -0.218 7.218 6 F -0.214 7.214 7 S 2.705 3.295 8 O -0.976 6.976 9 O -0.984 6.984 10 C -0.799 4.799 11 C 0.020 3.980 12 C -0.269 4.269 13 C 0.111 3.889 14 C -0.434 4.434 15 H 0.081 0.919 16 C 0.056 3.944 17 N -0.803 5.803 18 Si 0.954 3.046 19 H -0.243 1.243 20 H -0.268 1.268 21 H -0.259 1.259 22 C -0.220 4.220 23 C 0.088 3.912 24 Cl -0.067 7.067 25 H 0.065 0.935 26 H 0.101 0.899 27 H 0.069 0.931 28 H 0.146 0.854 29 H 0.116 0.884 30 H 0.167 0.833 31 H 0.144 0.856 32 H 0.121 0.879 33 H 0.307 0.693 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.092 10.123 -9.856 14.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.834 5.834 3 C -0.060 4.060 4 C 0.175 3.825 5 F -0.199 7.199 6 F -0.195 7.195 7 S 2.799 3.201 8 O -0.966 6.966 9 O -0.974 6.974 10 C -0.891 4.891 11 C 0.000 4.000 12 C -0.288 4.288 13 C 0.107 3.893 14 C -0.460 4.460 15 H 0.099 0.901 16 C -0.166 4.166 17 N -0.426 5.426 18 Si 0.777 3.223 19 H -0.168 1.168 20 H -0.194 1.194 21 H -0.183 1.183 22 C -0.241 4.241 23 C 0.060 3.940 24 Cl -0.038 7.038 25 H 0.083 0.917 26 H 0.119 0.881 27 H 0.088 0.912 28 H 0.164 0.836 29 H 0.134 0.866 30 H 0.184 0.816 31 H 0.162 0.838 32 H 0.139 0.861 33 H 0.118 0.882 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.947 9.547 -10.381 14.645 hybrid contribution 0.186 -0.526 0.778 0.958 sum -3.761 9.020 -9.603 13.701 Atomic orbital electron populations 1.21925 0.77016 1.04634 1.03048 1.57263 1.16092 1.20443 1.89627 1.22811 1.00493 0.87366 0.95373 1.23120 0.77381 0.93773 0.88186 1.93036 1.79218 1.69189 1.78479 1.92924 1.43176 1.95737 1.87711 1.01198 0.72511 0.72812 0.73607 1.93515 1.46478 1.85316 1.71297 1.93507 1.63788 1.57410 1.82739 1.29781 1.00061 1.35276 1.23960 1.20540 0.93262 0.90495 0.95692 1.21411 0.99311 1.13338 0.94774 1.17922 0.91777 0.86820 0.92759 1.19829 1.01225 1.32401 0.92551 0.90136 1.26860 0.97147 0.93827 0.98721 1.69621 1.19493 1.31195 1.22248 0.85677 0.79016 0.79053 0.78549 1.16773 1.19424 1.18282 1.21105 0.96664 1.12066 0.94260 1.20166 0.83538 0.96454 0.93869 1.98339 1.17566 1.96488 1.91369 0.91673 0.88055 0.91240 0.83607 0.86616 0.81606 0.83843 0.86109 0.88176 0.85781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.84 8.87 127.77 1.13 2.97 16 2 N -1.00 -26.78 3.08 -539.11 -1.66 -28.44 16 3 C 0.07 1.24 5.69 86.38 0.49 1.73 16 4 C 0.23 4.21 5.60 71.98 0.40 4.61 16 5 F -0.22 -6.14 15.35 44.97 0.69 -5.45 16 6 F -0.21 -4.41 15.75 44.97 0.71 -3.71 16 7 S 2.71 97.39 5.04 -56.49 -0.28 97.10 16 8 O -0.98 -37.33 14.32 -128.00 -1.83 -39.16 16 9 O -0.98 -39.99 14.76 -128.00 -1.89 -41.88 16 10 C -0.80 -31.55 5.94 22.48 0.13 -31.42 16 11 C 0.02 0.79 9.52 22.21 0.21 1.00 16 12 C -0.27 -11.60 7.18 22.73 0.16 -11.43 16 13 C 0.11 5.14 5.13 -21.30 -0.11 5.03 16 14 C -0.43 -21.18 9.60 23.46 0.23 -20.95 16 15 H 0.08 4.14 8.06 -2.91 -0.02 4.12 16 16 C 0.06 2.61 5.45 85.26 0.46 3.07 16 17 N -0.80 -37.87 13.93 21.83 0.30 -37.57 16 18 Si 0.95 37.79 24.46 68.60 1.68 39.47 16 19 H -0.24 -8.88 6.44 99.48 0.64 -8.24 16 20 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 21 H -0.26 -10.97 6.94 99.48 0.69 -10.28 16 22 C -0.22 -9.53 9.57 22.75 0.22 -9.32 16 23 C 0.09 3.54 6.29 22.28 0.14 3.68 16 24 Cl -0.07 -2.30 23.18 -2.72 -0.06 -2.36 16 25 H 0.06 1.46 6.39 -2.39 -0.02 1.44 16 26 H 0.10 1.84 6.77 -2.38 -0.02 1.82 16 27 H 0.07 1.83 7.00 -2.39 -0.02 1.82 16 28 H 0.15 1.63 8.11 -2.39 -0.02 1.61 16 29 H 0.12 2.10 7.80 -2.39 -0.02 2.08 16 30 H 0.17 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.14 5.05 7.31 -2.91 -0.02 5.03 16 32 H 0.12 4.99 4.32 -2.91 -0.01 4.98 16 33 H 0.31 12.80 8.30 -92.71 -0.77 12.03 16 34 H 0.12 5.09 8.06 -2.91 -0.02 5.07 16 Total: -1.00 -61.55 309.46 2.20 -59.35 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 1.08 Total: 13.66 kcal Atomic # 6 Polarization: -54.49 SS G_CDS: 3.48 Total: -51.01 kcal Atomic # 7 Polarization: -64.65 SS G_CDS: -1.36 Total: -66.01 kcal Atomic # 8 Polarization: -77.32 SS G_CDS: -3.72 Total: -81.04 kcal Atomic # 9 Polarization: -10.55 SS G_CDS: 1.40 Total: -9.16 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 1.68 Total: 39.47 kcal Atomic # 16 Polarization: 97.39 SS G_CDS: -0.28 Total: 97.10 kcal Atomic # 17 Polarization: -2.30 SS G_CDS: -0.06 Total: -2.36 kcal Total: -61.55 2.20 -59.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451166210.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.584 kcal (2) G-P(sol) polarization free energy of solvation -61.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds