Wall clock time and date at job start Tue Mar 31 2020 22:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35711 * 117.00181 * 2 1 4 4 C 1.38579 * 120.15242 * 0.02562 * 3 2 1 5 5 C 1.38136 * 120.12619 * 180.02562 * 4 3 2 6 6 C 1.38657 * 120.43003 * 359.97438 * 5 4 3 7 7 Br 1.89102 * 119.84523 * 180.02562 * 6 5 4 8 8 C 1.37823 * 120.30059 * 0.02562 * 6 5 4 9 9 C 1.39960 * 119.86965 * 0.22777 * 8 6 5 10 10 C 1.46885 * 120.21169 * 179.72665 * 9 8 6 11 11 C 1.35155 * 120.00028 * 45.66593 * 10 9 8 12 12 C 1.41785 * 120.00194 * 9.43232 * 11 10 9 13 13 O 1.21782 * 119.99887 * 6.28300 * 12 11 10 14 14 N 1.34778 * 120.00290 * 186.28958 * 12 11 10 15 15 C 1.46498 * 119.99870 * 359.97438 * 14 12 11 16 16 C 1.36749 * 119.99805 * 179.97438 * 14 12 11 17 17 H 1.08000 * 120.00152 * 30.20792 * 16 14 12 18 18 C 1.39091 * 119.99767 * 210.20094 * 16 14 12 19 19 N 1.31350 * 120.00005 * 7.39077 * 18 16 14 20 20 Si 1.86803 * 120.00121 * 187.38891 * 18 16 14 21 21 H 1.48496 * 109.46996 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47056 * 120.00487 * 20 18 16 23 23 H 1.48501 * 109.46845 * 240.00448 * 20 18 16 24 24 H 1.08997 * 109.47503 * 59.99538 * 1 2 3 25 25 H 1.08998 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46440 * 299.99556 * 1 2 3 27 27 H 1.08005 * 119.93620 * 359.97438 * 4 3 2 28 28 H 1.08007 * 119.78308 * 179.97438 * 5 4 3 29 29 H 1.08000 * 120.06542 * 179.97438 * 8 6 5 30 30 H 1.08000 * 120.00093 * 225.67784 * 10 9 8 31 31 H 1.08007 * 120.00173 * 189.42173 * 11 10 9 32 32 H 1.09004 * 109.46694 * 84.61761 * 15 14 12 33 33 H 1.08999 * 109.47170 * 204.61202 * 15 14 12 34 34 H 1.09001 * 109.47488 * 324.62278 * 15 14 12 35 35 H 0.96996 * 119.99885 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2935 2.3734 0.0005 5 6 1.9212 3.6039 0.0000 6 6 3.3054 3.6862 -0.0005 7 35 4.1474 5.3794 -0.0005 8 6 4.0701 2.5396 -0.0011 9 6 3.4472 1.2863 -0.0059 10 6 4.2549 0.0595 -0.0126 11 6 5.3109 -0.0589 0.8227 12 6 5.5220 0.9061 1.8398 13 8 4.6926 1.7761 2.0353 14 7 6.6407 0.8607 2.5901 15 6 7.6382 -0.1862 2.3552 16 6 6.8445 1.7918 3.5707 17 1 6.0007 2.2303 4.0827 18 6 8.1384 2.1739 3.9088 19 7 9.1558 1.7529 3.1925 20 14 8.4294 3.2858 5.3813 21 1 7.1285 3.6169 6.0162 22 1 9.2963 2.5882 6.3647 23 1 9.0947 4.5357 4.9339 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8901 27 1 0.2148 2.3186 0.0005 28 1 1.3300 4.5078 0.0000 29 1 5.1479 2.6081 -0.0019 30 1 4.0052 -0.7479 -0.6850 31 1 5.9938 -0.8888 0.7155 32 1 8.3075 0.1234 1.5525 33 1 8.2145 -0.3499 3.2658 34 1 7.1350 -1.1108 2.0724 35 1 10.0581 2.0197 3.4280 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491422431.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:57 Heat of formation + Delta-G solvation = 2.081318 kcal Electronic energy + Delta-G solvation = -21366.841596 eV Core-core repulsion = 17992.344602 eV Total energy + Delta-G solvation = -3374.496994 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.026 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.01013 -38.67669 -37.07970 -34.92756 -33.09620 -31.75429 -31.21928 -29.54632 -28.59404 -26.92098 -26.38046 -24.93473 -23.21047 -21.51808 -20.91485 -18.22879 -17.62014 -16.92319 -16.56754 -15.85041 -15.58889 -15.06848 -14.63846 -14.29024 -14.02486 -13.84464 -13.47130 -13.12580 -12.84723 -12.52478 -12.17897 -11.80578 -11.65274 -11.40094 -11.35126 -11.25091 -11.13468 -10.92860 -10.68193 -10.40214 -10.33808 -9.96726 -9.78360 -9.35510 -9.06970 -8.51202 -7.85056 -7.53220 -7.35139 -6.40077 -3.92176 1.23346 1.72092 2.15955 2.36587 3.16086 3.23590 3.30505 3.42304 4.10321 4.11396 4.47450 4.94455 5.02877 5.08180 5.13965 5.16497 5.18244 5.43253 5.48585 5.63190 5.76501 5.92842 6.02393 6.23182 6.38704 6.42299 6.46937 6.64984 6.78577 6.88885 6.93770 7.12703 7.16426 7.48837 7.60234 8.16963 8.48026 9.17678 9.37007 10.02171 10.63513 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.010852 B = 0.005278 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.462493 B = 5303.834154 C = 7166.437381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.312 6.312 3 C 0.144 3.856 4 C -0.222 4.222 5 C -0.054 4.054 6 C -0.135 4.135 7 Br -0.067 7.067 8 C 0.049 3.951 9 C -0.067 4.067 10 C -0.067 4.067 11 C -0.175 4.175 12 C 0.455 3.545 13 O -0.579 6.579 14 N -0.427 5.427 15 C 0.106 3.894 16 C -0.294 4.294 17 H 0.098 0.902 18 C 0.033 3.967 19 N -0.873 5.873 20 Si 0.926 3.074 21 H -0.266 1.266 22 H -0.280 1.280 23 H -0.279 1.279 24 H 0.052 0.948 25 H 0.096 0.904 26 H 0.054 0.946 27 H 0.127 0.873 28 H 0.124 0.876 29 H 0.133 0.867 30 H 0.125 0.875 31 H 0.121 0.879 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.030 0.970 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.513 -0.610 -8.705 14.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.225 6.225 3 C 0.099 3.901 4 C -0.241 4.241 5 C -0.074 4.074 6 C -0.214 4.214 7 Br 0.018 6.982 8 C 0.029 3.971 9 C -0.068 4.068 10 C -0.088 4.088 11 C -0.196 4.196 12 C 0.248 3.752 13 O -0.467 6.467 14 N -0.143 5.143 15 C -0.038 4.038 16 C -0.423 4.423 17 H 0.116 0.884 18 C -0.172 4.172 19 N -0.511 5.511 20 Si 0.752 3.248 21 H -0.191 1.191 22 H -0.206 1.206 23 H -0.205 1.205 24 H 0.071 0.929 25 H 0.114 0.886 26 H 0.072 0.928 27 H 0.145 0.855 28 H 0.142 0.858 29 H 0.151 0.849 30 H 0.142 0.858 31 H 0.139 0.861 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.220 0.261 -8.531 14.097 hybrid contribution 0.075 0.141 0.887 0.901 sum -11.145 0.402 -7.644 13.520 Atomic orbital electron populations 1.23013 0.78985 1.03524 1.01183 1.86017 1.20809 1.27125 1.88511 1.19101 0.91363 0.83885 0.95779 1.20847 0.99366 0.91773 1.12161 1.20708 0.92331 0.97315 0.97005 1.21288 0.94498 0.90989 1.14626 1.96592 1.81011 1.22527 1.98093 1.20903 0.99635 0.88979 0.87616 1.18030 0.89072 0.93710 1.06031 1.21770 0.93579 0.94930 0.98562 1.22422 0.98490 1.01126 0.97599 1.16968 0.85502 0.87861 0.84856 1.90694 1.45197 1.39614 1.71202 1.43677 1.16820 1.24613 1.29148 1.21571 0.91512 0.87892 1.02819 1.19703 0.93196 1.17536 1.11875 0.88390 1.25480 0.95385 0.97528 0.98805 1.69926 0.99431 1.44059 1.37680 0.85856 0.78739 0.79587 0.80582 1.19054 1.20620 1.20504 0.92890 0.88559 0.92765 0.85511 0.85781 0.84949 0.85769 0.86114 0.92723 0.90951 0.95185 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.31 -4.67 9.95 -18.84 -0.19 -4.86 16 3 C 0.14 2.45 6.71 -38.63 -0.26 2.19 16 4 C -0.22 -3.35 9.03 -39.49 -0.36 -3.71 16 5 C -0.05 -0.85 9.77 -39.46 -0.39 -1.24 16 6 C -0.13 -2.48 6.22 -39.58 -0.25 -2.72 16 7 Br -0.07 -1.16 33.69 -68.01 -2.29 -3.45 16 8 C 0.05 0.99 6.32 -39.09 -0.25 0.74 16 9 C -0.07 -1.27 4.48 -104.93 -0.47 -1.74 16 10 C -0.07 -1.19 9.35 -37.18 -0.35 -1.54 16 11 C -0.18 -3.44 9.02 -39.32 -0.35 -3.79 16 12 C 0.46 11.07 6.56 -14.90 -0.10 10.98 16 13 O -0.58 -15.42 11.67 5.12 0.06 -15.36 16 14 N -0.43 -10.88 2.99 -125.42 -0.37 -11.25 16 15 C 0.11 2.33 8.29 59.85 0.50 2.83 16 16 C -0.29 -8.12 9.11 -15.04 -0.14 -8.25 16 17 H 0.10 2.85 7.54 -52.49 -0.40 2.45 16 18 C 0.03 0.85 5.13 -17.44 -0.09 0.76 16 19 N -0.87 -22.99 10.93 55.50 0.61 -22.38 16 20 Si 0.93 20.74 29.56 -169.99 -5.02 15.72 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H 0.05 0.44 7.66 -51.93 -0.40 0.05 16 25 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 27 H 0.13 1.49 6.30 -52.48 -0.33 1.16 16 28 H 0.12 1.66 8.06 -52.48 -0.42 1.23 16 29 H 0.13 2.91 7.11 -52.49 -0.37 2.54 16 30 H 0.12 1.82 8.06 -52.49 -0.42 1.39 16 31 H 0.12 2.04 6.15 -52.48 -0.32 1.71 16 32 H 0.05 1.23 7.80 -51.93 -0.41 0.82 16 33 H 0.07 1.68 6.99 -51.93 -0.36 1.31 16 34 H 0.03 0.55 6.32 -51.93 -0.33 0.22 16 35 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 315.99 15.07 4.76 4.76 Total: -1.00 -30.84 315.99 -7.67 -38.52 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -3.72 Total: 2.53 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -1.50 Total: -4.21 kcal Atomic # 7 Polarization: -33.87 SS G_CDS: 0.23 Total: -33.64 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.13 Total: -20.22 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 35 Polarization: -1.16 SS G_CDS: -2.29 Total: -3.45 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.84 -7.67 -38.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491422431.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.597 kcal (2) G-P(sol) polarization free energy of solvation -30.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds