Wall clock time and date at job start Tue Mar 31 2020 22:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99864 * 2 1 4 4 H 1.48497 * 109.46892 * 269.99998 * 3 2 1 5 5 H 1.48500 * 109.46997 * 30.00207 * 3 2 1 6 6 H 1.48501 * 109.47010 * 150.00260 * 3 2 1 7 7 C 1.37875 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00120 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99779 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47028 * 180.02562 * 9 7 2 11 11 S 1.81392 * 109.47061 * 180.02562 * 10 9 7 12 12 O 1.42098 * 110.54446 * 68.37251 * 11 10 9 13 13 O 1.42105 * 110.54485 * 291.62673 * 11 10 9 14 14 N 1.65596 * 104.45254 * 180.02562 * 11 10 9 15 15 C 1.34781 * 120.00042 * 64.99634 * 14 11 10 16 16 O 1.21603 * 119.99642 * 0.02562 * 15 14 11 17 17 C 1.47487 * 119.99967 * 180.02562 * 15 14 11 18 18 C 1.39076 * 120.02261 * 0.02562 * 17 15 14 19 19 C 1.38320 * 120.02152 * 179.97438 * 18 17 15 20 20 C 1.37393 * 120.66872 * 0.02562 * 19 18 17 21 21 C 1.41062 * 120.68123 * 0.03130 * 20 19 18 22 22 C 1.45478 * 129.27266 * 179.97438 * 21 20 19 23 23 C 1.31754 * 114.90196 * 180.26734 * 22 21 20 24 24 S 1.75301 * 111.41388 * 359.58862 * 23 22 21 25 25 C 1.39724 * 118.93310 * 359.94845 * 21 20 19 26 26 H 0.97004 * 120.00073 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47120 * 59.99807 * 9 7 2 28 28 H 1.09001 * 109.47086 * 299.99927 * 9 7 2 29 29 H 1.09000 * 109.46740 * 59.99950 * 10 9 7 30 30 H 1.09001 * 109.46993 * 299.99819 * 10 9 7 31 31 H 0.96995 * 120.00333 * 245.00670 * 14 11 10 32 32 H 1.08003 * 119.98731 * 359.97438 * 18 17 15 33 33 H 1.08007 * 119.66689 * 180.02562 * 19 18 17 34 34 H 1.07995 * 119.65783 * 179.97438 * 20 19 18 35 35 H 1.08002 * 122.54566 * 359.97438 * 22 21 20 36 36 H 1.08000 * 124.29135 * 179.70452 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 16 5.8355 -2.6366 0.0001 12 8 6.3341 -2.1460 1.2370 13 8 6.3342 -2.1462 -1.2369 14 7 6.2487 -4.2401 -0.0004 15 6 5.9392 -5.0154 -1.0586 16 8 5.3569 -4.5372 -2.0130 17 6 6.3068 -6.4438 -1.0588 18 6 6.9724 -6.9912 0.0327 19 6 7.3166 -8.3309 0.0327 20 6 7.0083 -9.1337 -1.0388 21 6 6.3349 -8.6084 -2.1615 22 6 5.9209 -9.2793 -3.3842 23 6 5.3090 -8.5084 -4.2601 24 16 5.1618 -6.8634 -3.6723 25 6 5.9839 -7.2559 -2.1676 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6796 0.8894 28 1 3.8745 -0.6808 -0.8905 29 1 3.6578 -3.1505 -0.8897 30 1 3.6586 -3.1502 0.8903 31 1 6.7134 -4.6215 0.7607 32 1 7.2205 -6.3701 0.8807 33 1 7.8331 -8.7502 0.8836 34 1 7.2852 -10.1774 -1.0218 35 1 6.1054 -10.3284 -3.5623 36 1 4.9429 -8.8474 -5.2179 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768011859.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:30 Heat of formation + Delta-G solvation = -59.135920 kcal Electronic energy + Delta-G solvation = -24024.529701 eV Core-core repulsion = 20306.602392 eV Total energy + Delta-G solvation = -3717.927310 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 339.043 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.73000 -39.16672 -36.87400 -35.79073 -35.60957 -34.55638 -33.96066 -31.59176 -31.48326 -29.71268 -26.03527 -25.03491 -23.96101 -21.84825 -21.33899 -20.96038 -19.69061 -18.75924 -17.75051 -17.39334 -16.93329 -16.32087 -15.96991 -15.52345 -15.41616 -15.15739 -15.11059 -14.60022 -14.28277 -14.05988 -13.87023 -13.65274 -12.94591 -12.81392 -12.48345 -12.16908 -11.98072 -11.94148 -11.88608 -11.77775 -11.68362 -11.29754 -11.24464 -11.01829 -10.97069 -10.44118 -10.32926 -10.11059 -10.02264 -9.64652 -9.35704 -8.97004 -8.65015 -8.04447 -6.15120 -4.16584 0.07964 0.33481 0.57861 1.28847 1.71509 1.84438 2.37019 2.55780 3.28243 3.31007 3.35076 3.38550 3.80005 3.98424 4.16167 4.34038 4.36930 4.46623 4.60386 4.64142 4.83736 4.93685 5.10539 5.16142 5.25514 5.42367 5.46109 5.52789 5.56384 5.70740 5.87077 6.02002 6.25149 6.27180 6.48259 6.79647 6.92474 7.28547 7.54328 8.37565 8.86042 9.43890 10.97196 Molecular weight = 339.04amu Principal moments of inertia in cm(-1) A = 0.017061 B = 0.003226 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.743553 B = 8678.180309 C = 9581.593415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.869 3.131 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.518 4.518 8 H 0.079 0.921 9 C -0.005 4.005 10 C -0.568 4.568 11 S 2.563 3.437 12 O -0.952 6.952 13 O -0.934 6.934 14 N -1.053 6.053 15 C 0.577 3.423 16 O -0.477 6.477 17 C -0.109 4.109 18 C -0.057 4.057 19 C -0.132 4.132 20 C -0.044 4.044 21 C -0.086 4.086 22 C -0.125 4.125 23 C -0.212 4.212 24 S 0.174 5.826 25 C -0.101 4.101 26 H 0.267 0.733 27 H 0.034 0.966 28 H 0.031 0.969 29 H 0.138 0.862 30 H 0.129 0.871 31 H 0.427 0.573 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.134 0.866 35 H 0.145 0.855 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.822 -22.408 -1.889 27.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.130 4.130 3 Si 0.695 3.305 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.557 4.557 8 H 0.097 0.903 9 C -0.045 4.045 10 C -0.702 4.702 11 S 2.663 3.337 12 O -0.942 6.942 13 O -0.925 6.925 14 N -0.814 5.814 15 C 0.364 3.636 16 O -0.350 6.350 17 C -0.119 4.119 18 C -0.078 4.078 19 C -0.153 4.153 20 C -0.064 4.064 21 C -0.095 4.095 22 C -0.154 4.154 23 C -0.346 4.346 24 S 0.440 5.560 25 C -0.219 4.219 26 H 0.076 0.924 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.156 0.844 30 H 0.147 0.853 31 H 0.264 0.736 32 H 0.155 0.845 33 H 0.156 0.844 34 H 0.152 0.848 35 H 0.163 0.837 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 15.231 -19.955 -3.327 25.323 hybrid contribution 0.652 -1.040 1.044 1.612 sum 15.884 -20.994 -2.282 26.425 Atomic orbital electron populations 1.69880 1.06188 1.27256 1.49919 1.24971 0.94828 0.99123 0.94112 0.86925 0.80647 0.83685 0.79197 1.19592 1.20731 1.18640 1.20809 0.87552 0.95025 1.52355 0.90300 1.19440 1.00088 0.86919 0.98025 1.30180 1.18290 1.10008 1.11769 1.06783 0.80286 0.72007 0.74621 1.93601 1.79598 1.76034 1.44983 1.93612 1.78467 1.75990 1.44382 1.55281 1.66797 1.32721 1.26637 1.18074 0.77492 0.86696 0.81343 1.90982 1.37862 1.73956 1.32204 1.19080 1.05299 0.92215 0.95277 1.21303 0.94458 0.95912 0.96169 1.20883 1.01901 0.93327 0.99155 1.21201 0.94113 0.99976 0.91074 1.19328 1.02324 0.91668 0.96210 1.20837 1.01551 1.00874 0.92181 1.25548 1.05338 0.99361 1.04380 1.85322 1.57584 1.05550 1.07532 1.22847 1.03231 0.96572 0.99238 0.92353 0.94828 0.95078 0.84373 0.85314 0.73640 0.84468 0.84369 0.84843 0.83714 0.81340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.28 13.96 55.43 0.77 -26.50 16 2 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 3 Si 0.87 21.66 27.47 -169.99 -4.67 16.99 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 7 C -0.52 -14.71 9.66 -34.44 -0.33 -15.04 16 8 H 0.08 2.36 7.99 -52.49 -0.42 1.94 16 9 C -0.01 -0.12 4.05 -27.88 -0.11 -0.24 16 10 C -0.57 -10.94 5.82 37.16 0.22 -10.73 16 11 S 2.56 44.82 5.11 -107.50 -0.55 44.27 16 12 O -0.95 -17.71 18.08 -57.54 -1.04 -18.75 16 13 O -0.93 -19.58 17.03 -64.80 -1.10 -20.68 16 14 N -1.05 -13.48 5.55 30.45 0.17 -13.32 16 15 C 0.58 8.27 7.50 -12.49 -0.09 8.17 16 16 O -0.48 -8.47 13.09 -11.88 -0.16 -8.62 16 17 C -0.11 -1.28 5.90 -104.70 -0.62 -1.89 16 18 C -0.06 -0.46 9.52 -39.24 -0.37 -0.83 16 19 C -0.13 -0.84 9.98 -39.86 -0.40 -1.24 16 20 C -0.04 -0.31 10.08 -38.82 -0.39 -0.70 16 21 C -0.09 -0.83 6.04 -105.39 -0.64 -1.46 16 22 C -0.12 -1.02 10.39 -38.59 -0.40 -1.42 16 23 C -0.21 -1.87 11.01 28.85 0.32 -1.55 16 24 S 0.17 2.14 21.37 -107.50 -2.30 -0.16 16 25 C -0.10 -1.23 6.33 -37.91 -0.24 -1.47 16 26 H 0.27 7.57 8.31 -40.82 -0.34 7.24 16 27 H 0.03 0.79 7.20 -51.93 -0.37 0.42 16 28 H 0.03 0.75 7.57 -51.93 -0.39 0.36 16 29 H 0.14 2.66 7.19 -51.92 -0.37 2.29 16 30 H 0.13 2.15 8.14 -51.92 -0.42 1.73 16 31 H 0.43 3.59 6.79 -34.47 -0.23 3.36 16 32 H 0.14 0.68 6.37 -52.48 -0.33 0.34 16 33 H 0.14 0.46 8.06 -52.48 -0.42 0.04 16 34 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 35 H 0.15 0.77 8.06 -52.49 -0.42 0.34 16 36 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 335.95 15.07 5.06 5.06 Total: -1.00 -37.52 335.95 -10.38 -47.90 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -3.41 Total: 0.20 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: -3.16 Total: -26.39 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.94 Total: -39.82 kcal Atomic # 8 Polarization: -45.76 SS G_CDS: -2.30 Total: -48.06 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Atomic # 16 Polarization: 46.96 SS G_CDS: -2.85 Total: 44.11 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -37.52 -10.38 -47.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768011859.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.239 kcal (2) G-P(sol) polarization free energy of solvation -37.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds