Wall clock time and date at job start Tue Mar 31 2020 22:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99864 * 2 1 4 4 H 1.48497 * 109.46892 * 269.99998 * 3 2 1 5 5 H 1.48500 * 109.46997 * 30.00207 * 3 2 1 6 6 H 1.48501 * 109.47010 * 150.00260 * 3 2 1 7 7 C 1.37875 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00120 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99779 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47028 * 180.02562 * 9 7 2 11 11 S 1.81392 * 109.47061 * 180.02562 * 10 9 7 12 12 O 1.42098 * 110.54446 * 68.37251 * 11 10 9 13 13 O 1.42105 * 110.54485 * 291.62673 * 11 10 9 14 14 N 1.65596 * 104.45254 * 180.02562 * 11 10 9 15 15 C 1.34781 * 120.00042 * 64.99634 * 14 11 10 16 16 O 1.21603 * 119.99642 * 0.02562 * 15 14 11 17 17 C 1.47487 * 119.99967 * 180.02562 * 15 14 11 18 18 C 1.39076 * 120.02261 * 0.02562 * 17 15 14 19 19 C 1.38320 * 120.02152 * 179.97438 * 18 17 15 20 20 C 1.37393 * 120.66872 * 0.02562 * 19 18 17 21 21 C 1.41062 * 120.68123 * 0.03130 * 20 19 18 22 22 C 1.45478 * 129.27266 * 179.97438 * 21 20 19 23 23 C 1.31754 * 114.90196 * 180.26734 * 22 21 20 24 24 S 1.75301 * 111.41388 * 359.58862 * 23 22 21 25 25 C 1.39724 * 118.93310 * 359.94845 * 21 20 19 26 26 H 0.97004 * 120.00073 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47120 * 59.99807 * 9 7 2 28 28 H 1.09001 * 109.47086 * 299.99927 * 9 7 2 29 29 H 1.09000 * 109.46740 * 59.99950 * 10 9 7 30 30 H 1.09001 * 109.46993 * 299.99819 * 10 9 7 31 31 H 0.96995 * 120.00333 * 245.00670 * 14 11 10 32 32 H 1.08003 * 119.98731 * 359.97438 * 18 17 15 33 33 H 1.08007 * 119.66689 * 180.02562 * 19 18 17 34 34 H 1.07995 * 119.65783 * 179.97438 * 20 19 18 35 35 H 1.08002 * 122.54566 * 359.97438 * 22 21 20 36 36 H 1.08000 * 124.29135 * 179.70452 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 16 5.8355 -2.6366 0.0001 12 8 6.3341 -2.1460 1.2370 13 8 6.3342 -2.1462 -1.2369 14 7 6.2487 -4.2401 -0.0004 15 6 5.9392 -5.0154 -1.0586 16 8 5.3569 -4.5372 -2.0130 17 6 6.3068 -6.4438 -1.0588 18 6 6.9724 -6.9912 0.0327 19 6 7.3166 -8.3309 0.0327 20 6 7.0083 -9.1337 -1.0388 21 6 6.3349 -8.6084 -2.1615 22 6 5.9209 -9.2793 -3.3842 23 6 5.3090 -8.5084 -4.2601 24 16 5.1618 -6.8634 -3.6723 25 6 5.9839 -7.2559 -2.1676 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6796 0.8894 28 1 3.8745 -0.6808 -0.8905 29 1 3.6578 -3.1505 -0.8897 30 1 3.6586 -3.1502 0.8903 31 1 6.7134 -4.6215 0.7607 32 1 7.2205 -6.3701 0.8807 33 1 7.8331 -8.7502 0.8836 34 1 7.2852 -10.1774 -1.0218 35 1 6.1054 -10.3284 -3.5623 36 1 4.9429 -8.8474 -5.2179 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768011859.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:30 Heat of formation + Delta-G solvation = -86.885438 kcal Electronic energy + Delta-G solvation = -24025.733011 eV Core-core repulsion = 20306.602392 eV Total energy + Delta-G solvation = -3719.130619 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 339.043 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.69559 -39.98429 -38.37798 -37.32910 -36.38869 -35.96915 -35.57947 -33.54949 -32.27192 -30.36335 -27.99975 -25.93120 -24.61120 -23.31167 -22.67090 -21.67744 -20.94510 -19.89294 -19.39042 -18.58387 -18.24129 -17.43476 -17.03236 -16.80664 -16.49794 -16.31568 -16.14063 -16.04710 -15.39906 -15.38026 -14.86220 -14.68474 -14.58588 -13.95560 -13.84752 -13.47605 -13.41847 -13.33700 -13.14895 -13.07595 -12.74748 -12.64483 -12.38170 -12.32119 -12.20506 -12.00085 -11.87460 -11.73290 -11.29494 -11.20242 -10.86875 -10.73049 -9.64028 -8.86566 -8.38657 -6.45474 -1.12188 -0.61233 -0.13287 0.51973 1.00055 1.10398 1.27646 1.31871 1.32532 1.43056 1.53790 2.28073 2.42162 2.65577 2.88687 2.94853 3.12171 3.55970 3.66061 3.81104 3.85814 3.94765 3.99170 4.23878 4.38349 4.47480 4.48891 4.68772 4.84608 4.97584 4.98731 5.01716 5.13304 5.30790 5.41066 5.42575 5.54768 5.75816 6.13298 6.25580 6.59782 7.18562 8.77112 Molecular weight = 339.04amu Principal moments of inertia in cm(-1) A = 0.017061 B = 0.003226 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.743553 B = 8678.180309 C = 9581.593415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.014 3.986 3 Si 0.928 3.072 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.244 1.244 7 C -0.530 4.530 8 H 0.046 0.954 9 C -0.014 4.014 10 C -0.579 4.579 11 S 2.604 3.396 12 O -0.957 6.957 13 O -0.969 6.969 14 N -1.032 6.032 15 C 0.572 3.428 16 O -0.520 6.520 17 C -0.142 4.142 18 C -0.046 4.046 19 C -0.126 4.126 20 C -0.030 4.030 21 C -0.102 4.102 22 C -0.114 4.114 23 C -0.210 4.210 24 S 0.073 5.927 25 C -0.120 4.120 26 H 0.271 0.729 27 H 0.044 0.956 28 H 0.029 0.971 29 H 0.130 0.870 30 H 0.151 0.849 31 H 0.448 0.552 32 H 0.169 0.831 33 H 0.182 0.818 34 H 0.173 0.827 35 H 0.183 0.817 36 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.914 -24.937 -0.059 31.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.185 4.185 3 Si 0.750 3.250 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.167 1.167 7 C -0.569 4.569 8 H 0.064 0.936 9 C -0.053 4.053 10 C -0.712 4.712 11 S 2.702 3.298 12 O -0.948 6.948 13 O -0.959 6.959 14 N -0.799 5.799 15 C 0.362 3.638 16 O -0.395 6.395 17 C -0.152 4.152 18 C -0.066 4.066 19 C -0.146 4.146 20 C -0.050 4.050 21 C -0.111 4.111 22 C -0.143 4.143 23 C -0.343 4.343 24 S 0.338 5.662 25 C -0.237 4.237 26 H 0.080 0.920 27 H 0.063 0.937 28 H 0.047 0.953 29 H 0.148 0.852 30 H 0.169 0.831 31 H 0.290 0.710 32 H 0.186 0.814 33 H 0.199 0.801 34 H 0.190 0.810 35 H 0.200 0.800 36 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 18.331 -22.505 -1.458 29.063 hybrid contribution -0.258 -0.520 0.538 0.791 sum 18.074 -23.025 -0.920 29.285 Atomic orbital electron populations 1.70012 1.07950 1.28518 1.51388 1.25901 0.95706 1.03145 0.93753 0.85985 0.80120 0.79068 0.79839 1.18889 1.19496 1.16713 1.21111 0.90064 0.93925 1.51835 0.93616 1.19384 0.97423 0.90243 0.98258 1.30180 1.21193 1.07208 1.12617 1.05324 0.78412 0.72589 0.73490 1.93587 1.79027 1.77094 1.45055 1.93571 1.78453 1.77693 1.46221 1.54719 1.66661 1.31059 1.27483 1.18646 0.76567 0.87968 0.80602 1.90973 1.39903 1.74830 1.33819 1.19041 1.08502 0.90450 0.97205 1.21791 0.92140 0.97317 0.95388 1.21426 1.00764 0.92263 1.00116 1.21751 0.91663 1.01903 0.89640 1.19776 1.02857 0.90680 0.97741 1.21266 0.99726 1.02239 0.91083 1.25664 1.06395 0.96581 1.05663 1.85551 1.59936 1.10160 1.10506 1.22996 1.04065 0.98023 0.98586 0.91999 0.93750 0.95263 0.85187 0.83126 0.71018 0.81385 0.80098 0.80951 0.79975 0.79110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.02 13.96 21.45 0.30 -58.72 16 2 C 0.01 0.81 5.47 84.65 0.46 1.27 16 3 Si 0.93 44.63 27.47 68.60 1.88 46.52 16 4 H -0.26 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.24 -10.92 6.54 99.48 0.65 -10.27 16 7 C -0.53 -31.15 9.66 25.60 0.25 -30.90 16 8 H 0.05 2.89 7.99 -2.91 -0.02 2.86 16 9 C -0.01 -0.68 4.05 29.85 0.12 -0.56 16 10 C -0.58 -22.75 5.82 71.98 0.42 -22.34 16 11 S 2.60 89.71 5.11 -56.49 -0.29 89.43 16 12 O -0.96 -33.89 18.08 -127.65 -2.31 -36.20 16 13 O -0.97 -41.01 17.03 -120.71 -2.06 -43.07 16 14 N -1.03 -25.35 5.55 -175.83 -0.98 -26.33 16 15 C 0.57 16.61 7.50 86.68 0.65 17.26 16 16 O -0.52 -19.61 13.09 12.36 0.16 -19.45 16 17 C -0.14 -3.20 5.90 -19.92 -0.12 -3.32 16 18 C -0.05 -0.57 9.52 22.49 0.21 -0.36 16 19 C -0.13 -0.94 9.98 22.09 0.22 -0.72 16 20 C -0.03 -0.28 10.08 22.76 0.23 -0.05 16 21 C -0.10 -1.71 6.04 -20.36 -0.12 -1.83 16 22 C -0.11 -1.60 10.39 23.40 0.24 -1.36 16 23 C -0.21 -3.62 11.01 67.09 0.74 -2.89 16 24 S 0.07 1.97 21.37 -56.49 -1.21 0.76 16 25 C -0.12 -2.89 6.33 23.35 0.15 -2.74 16 26 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 27 H 0.04 2.06 7.20 -2.39 -0.02 2.04 16 28 H 0.03 1.43 7.57 -2.39 -0.02 1.41 16 29 H 0.13 5.32 7.19 -2.39 -0.02 5.30 16 30 H 0.15 5.07 8.14 -2.39 -0.02 5.05 16 31 H 0.45 6.38 6.79 -96.75 -0.66 5.73 16 32 H 0.17 0.88 6.37 -2.91 -0.02 0.86 16 33 H 0.18 -0.11 8.06 -2.91 -0.02 -0.13 16 34 H 0.17 0.26 8.06 -2.91 -0.02 0.23 16 35 H 0.18 1.13 8.06 -2.91 -0.02 1.10 16 36 H 0.19 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -86.95 335.95 -0.61 -87.56 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: 0.43 Total: 8.03 kcal Atomic # 6 Polarization: -51.98 SS G_CDS: 3.45 Total: -48.53 kcal Atomic # 7 Polarization: -84.37 SS G_CDS: -0.68 Total: -85.05 kcal Atomic # 8 Polarization: -94.51 SS G_CDS: -4.20 Total: -98.72 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.88 Total: 46.52 kcal Atomic # 16 Polarization: 91.68 SS G_CDS: -1.50 Total: 90.19 kcal Total: -86.95 -0.61 -87.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768011859.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.670 kcal (2) G-P(sol) polarization free energy of solvation -86.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds