Wall clock time and date at job start Tue Mar 31 2020 22:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00000 * 2 1 4 4 H 1.48505 * 109.47381 * 240.00238 * 3 2 1 5 5 H 1.48497 * 109.47522 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46994 * 120.00664 * 3 2 1 7 7 C 1.37872 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00076 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00358 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47528 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47215 * 179.97438 * 10 9 7 12 12 O 1.42094 * 110.54353 * 68.37420 * 11 10 9 13 13 O 1.42103 * 110.54286 * 291.62207 * 11 10 9 14 14 N 1.65600 * 104.44898 * 180.02562 * 11 10 9 15 15 C 1.34781 * 120.00217 * 64.99954 * 14 11 10 16 16 O 1.21586 * 119.99461 * 0.02562 * 15 14 11 17 17 C 1.47623 * 120.00289 * 179.97438 * 15 14 11 18 18 C 1.40236 * 119.94652 * 0.02562 * 17 15 14 19 19 C 1.36019 * 120.19260 * 179.97438 * 18 17 15 20 20 C 1.40107 * 120.66215 * 0.04683 * 19 18 17 21 21 S 1.75975 * 130.37019 * 179.97438 * 20 19 18 22 22 C 1.75283 * 92.22709 * 179.80182 * 21 20 19 23 23 C 1.31737 * 111.46713 * 0.31902 * 22 21 20 24 24 C 1.39970 * 120.03351 * 359.94880 * 20 19 18 25 25 C 1.38640 * 119.94957 * 179.97438 * 17 15 14 26 26 H 0.97002 * 119.99628 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47264 * 60.00036 * 9 7 2 28 28 H 1.09004 * 109.46971 * 300.00182 * 9 7 2 29 29 H 1.09001 * 109.46783 * 59.99786 * 10 9 7 30 30 H 1.09004 * 109.47179 * 300.00099 * 10 9 7 31 31 H 0.96996 * 120.00024 * 244.99571 * 14 11 10 32 32 H 1.07996 * 119.90739 * 359.97438 * 18 17 15 33 33 H 1.07995 * 119.66845 * 180.02562 * 19 18 17 34 34 H 1.07993 * 124.26479 * 180.21728 * 22 21 20 35 35 H 1.08002 * 122.55634 * 179.89850 * 23 22 21 36 36 H 1.08002 * 119.96060 * 359.97438 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 16 1.3382 -5.2330 -0.0011 12 8 0.6628 -5.4195 -1.2373 13 8 0.6656 -5.4199 1.2367 14 7 2.5203 -6.3927 -0.0018 15 6 3.3477 -6.5125 1.0554 16 8 3.2257 -5.7693 2.0099 17 6 4.4011 -7.5466 1.0550 18 6 4.5404 -8.4035 -0.0463 19 6 5.5097 -9.3578 -0.0523 20 6 6.3794 -9.4997 1.0370 21 16 7.7038 -10.6285 1.2987 22 6 8.0652 -9.9459 2.8722 23 6 7.2467 -8.9570 3.1682 24 6 6.2570 -8.6543 2.1459 25 6 5.2519 -7.6685 2.1429 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5568 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 2.8726 -3.6047 0.8877 30 1 2.8712 -3.6040 -0.8923 31 1 2.6173 -6.9859 -0.7631 32 1 3.8763 -8.3055 -0.8923 33 1 5.6096 -10.0129 -0.9050 34 1 8.8578 -10.2934 3.5182 35 1 7.3087 -8.4095 4.0971 36 1 5.1433 -7.0065 2.9893 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776122970.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:58 Heat of formation + Delta-G solvation = -67.043955 kcal Electronic energy + Delta-G solvation = -23570.060770 eV Core-core repulsion = 19851.790542 eV Total energy + Delta-G solvation = -3718.270228 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 339.043 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.75315 -39.19972 -36.73413 -35.68917 -35.63448 -34.46989 -33.89628 -31.58416 -31.17890 -29.91182 -25.65843 -25.21691 -23.60406 -22.37836 -21.68092 -20.71244 -19.47757 -18.76501 -17.90585 -17.52683 -16.60024 -16.12493 -15.84356 -15.76416 -15.36312 -14.99573 -14.95633 -14.54478 -14.26219 -14.16652 -14.06127 -13.43883 -13.28808 -12.68695 -12.53316 -12.34929 -11.83123 -11.74769 -11.73402 -11.66709 -11.63154 -11.22335 -11.06823 -11.00773 -10.90804 -10.48889 -10.40155 -10.32063 -10.15729 -9.71400 -9.19473 -9.09270 -8.48987 -8.23074 -6.11538 -4.17055 0.12097 0.40248 0.48576 1.01346 1.48660 1.73635 2.28585 2.67234 3.28945 3.32821 3.33470 3.35607 3.86736 4.08463 4.13104 4.28084 4.37942 4.51889 4.62427 4.73224 4.83242 4.86800 5.12541 5.23705 5.24035 5.40037 5.51447 5.59136 5.70930 5.71638 5.78818 5.87852 6.22581 6.45597 6.59251 7.28476 7.35250 7.38127 7.81358 8.17183 8.85668 9.47422 10.99539 Molecular weight = 339.04amu Principal moments of inertia in cm(-1) A = 0.018242 B = 0.002518 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.538587 B =11115.359270 C =12010.293407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.058 3.942 3 Si 0.902 3.098 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.030 3.970 10 C -0.575 4.575 11 S 2.566 3.434 12 O -0.953 6.953 13 O -0.936 6.936 14 N -1.055 6.055 15 C 0.582 3.418 16 O -0.484 6.484 17 C -0.140 4.140 18 C -0.068 4.068 19 C -0.089 4.089 20 C -0.117 4.117 21 S 0.094 5.906 22 C -0.195 4.195 23 C -0.108 4.108 24 C -0.089 4.089 25 C -0.003 4.003 26 H 0.266 0.734 27 H 0.034 0.966 28 H 0.036 0.964 29 H 0.132 0.868 30 H 0.122 0.878 31 H 0.426 0.574 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.171 0.829 35 H 0.152 0.848 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.675 -23.287 1.175 28.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.729 3.271 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.559 4.559 8 H 0.080 0.920 9 C -0.009 4.009 10 C -0.710 4.710 11 S 2.666 3.334 12 O -0.943 6.943 13 O -0.926 6.926 14 N -0.816 5.816 15 C 0.370 3.630 16 O -0.356 6.356 17 C -0.147 4.147 18 C -0.090 4.090 19 C -0.111 4.111 20 C -0.233 4.233 21 S 0.358 5.642 22 C -0.328 4.328 23 C -0.138 4.138 24 C -0.098 4.098 25 C -0.023 4.023 26 H 0.076 0.924 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.150 0.850 30 H 0.141 0.859 31 H 0.262 0.738 32 H 0.156 0.844 33 H 0.154 0.846 34 H 0.188 0.812 35 H 0.169 0.831 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 16.196 -24.082 1.128 29.044 hybrid contribution 0.524 1.913 0.349 2.014 sum 16.721 -22.169 1.477 27.807 Atomic orbital electron populations 1.69947 1.06106 1.27343 1.49460 1.25061 0.94997 0.99535 0.94861 0.86503 0.79473 0.82410 0.78731 1.20078 1.21068 1.20026 1.20940 0.93081 0.89584 1.52320 0.91997 1.18991 0.92615 0.90280 0.99053 1.30341 1.13727 1.16017 1.10875 1.06739 0.74887 0.77218 0.74527 1.93592 1.70293 1.85302 1.45126 1.93602 1.70234 1.84311 1.44448 1.55380 1.49125 1.50470 1.26670 1.18022 0.80408 0.83396 0.81198 1.90999 1.69536 1.42744 1.32333 1.19600 0.98916 0.99249 0.96938 1.20907 0.97220 0.93639 0.97234 1.20113 0.94631 0.99397 0.96955 1.23049 1.01080 1.00482 0.98664 1.84248 1.28928 1.36012 1.15054 1.25069 1.05245 1.01979 1.00529 1.20995 0.94506 0.98493 0.99763 1.19273 0.98387 0.97981 0.94125 1.21210 0.89871 0.94103 0.97146 0.92448 0.94735 0.94535 0.84990 0.85949 0.73761 0.84383 0.84608 0.81175 0.83082 0.83361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 9 C 0.03 0.77 4.98 -27.88 -0.14 0.63 16 10 C -0.57 -11.36 5.82 37.16 0.22 -11.15 16 11 S 2.57 46.38 5.11 -107.50 -0.55 45.83 16 12 O -0.95 -18.59 18.08 -57.54 -1.04 -19.63 16 13 O -0.94 -20.43 17.03 -64.80 -1.10 -21.53 16 14 N -1.06 -13.58 5.55 30.48 0.17 -13.41 16 15 C 0.58 8.05 7.50 -12.43 -0.09 7.96 16 16 O -0.48 -8.44 14.40 -11.87 -0.17 -8.61 16 17 C -0.14 -1.51 5.86 -105.17 -0.62 -2.13 16 18 C -0.07 -0.55 9.46 -39.63 -0.38 -0.93 16 19 C -0.09 -0.67 9.99 -39.68 -0.40 -1.07 16 20 C -0.12 -1.01 6.49 -38.23 -0.25 -1.26 16 21 S 0.09 0.65 23.23 -107.50 -2.50 -1.85 16 22 C -0.19 -1.22 11.01 28.85 0.32 -0.90 16 23 C -0.11 -0.80 10.39 -38.58 -0.40 -1.20 16 24 C -0.09 -0.83 6.03 -105.40 -0.64 -1.47 16 25 C 0.00 -0.03 9.65 -38.47 -0.37 -0.40 16 26 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.13 2.56 7.19 -51.92 -0.37 2.19 16 30 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 31 H 0.43 3.66 6.80 -34.47 -0.23 3.43 16 32 H 0.14 0.71 6.38 -52.49 -0.33 0.38 16 33 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.17 0.62 8.06 -52.49 -0.42 0.20 16 35 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.15 1.50 7.61 -52.49 -0.40 1.10 16 LS Contribution 341.93 15.07 5.15 5.15 Total: -1.00 -37.08 341.93 -10.90 -47.97 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -3.42 Total: 0.78 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: -3.15 Total: -25.19 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.91 Total: -39.28 kcal Atomic # 8 Polarization: -47.46 SS G_CDS: -2.31 Total: -49.78 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 47.03 SS G_CDS: -3.05 Total: 43.98 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -37.08 -10.90 -47.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776122970.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.070 kcal (2) G-P(sol) polarization free energy of solvation -37.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds