Wall clock time and date at job start Tue Mar 31 2020 22:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86796 * 120.00073 * 2 1 4 4 H 1.48499 * 109.47023 * 269.99749 * 3 2 1 5 5 H 1.48504 * 109.47353 * 29.99599 * 3 2 1 6 6 H 1.48501 * 109.47345 * 149.99801 * 3 2 1 7 7 C 1.38653 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99926 * 180.02562 * 7 2 1 9 9 O 1.34833 * 120.00056 * 359.97438 * 7 2 1 10 10 C 1.35752 * 116.99794 * 185.05387 * 9 7 2 11 11 C 1.38876 * 120.07145 * 354.47487 * 10 9 7 12 12 C 1.38099 * 119.92977 * 180.02562 * 11 10 9 13 13 C 1.38296 * 120.07222 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.93296 * 179.97438 * 13 12 11 15 15 N 1.46498 * 109.47005 * 89.99872 * 14 13 12 16 16 S 1.65605 * 120.00031 * 165.27600 * 15 14 13 17 17 O 1.42099 * 106.40385 * 178.26276 * 16 15 14 18 18 O 1.42096 * 106.40034 * 311.18361 * 16 15 14 19 19 C 1.76198 * 107.21748 * 64.72318 * 16 15 14 20 20 C 1.38425 * 122.53859 * 269.74156 * 19 16 15 21 21 C 1.33392 * 114.92233 * 179.76146 * 20 19 16 22 22 S 1.75889 * 109.58981 * 0.47378 * 21 20 19 23 23 C 1.33383 * 122.54157 * 90.02303 * 19 16 15 24 24 C 1.38303 * 120.13483 * 0.25024 * 13 12 11 25 25 C 1.38103 * 120.06928 * 359.45374 * 24 13 12 26 26 H 0.96998 * 119.99791 * 0.02562 * 1 2 3 27 27 H 1.08003 * 120.03473 * 359.97438 * 11 10 9 28 28 H 1.08002 * 119.96236 * 179.97438 * 12 11 10 29 29 H 1.08994 * 109.46890 * 329.99794 * 14 13 12 30 30 H 1.08994 * 109.46986 * 209.99500 * 14 13 12 31 31 H 0.97000 * 120.00321 * 344.99958 * 15 14 13 32 32 H 1.08002 * 122.54127 * 359.97438 * 20 19 16 33 33 H 1.07999 * 125.20706 * 180.20308 * 21 20 19 34 34 H 1.08005 * 125.20406 * 0.03034 * 23 19 16 35 35 H 1.08009 * 119.96396 * 179.70886 * 24 13 12 36 36 H 1.08002 * 120.03287 * 180.27094 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0463 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4402 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0016 10 6 2.0700 -3.5045 0.1086 11 6 3.4572 -3.4394 0.0952 12 6 4.2024 -4.5970 0.2038 13 6 3.5687 -5.8203 0.3252 14 6 4.3850 -7.0816 0.4428 15 7 4.6566 -7.3575 1.8557 16 16 5.2096 -8.8488 2.3168 17 8 5.4115 -8.7851 3.7219 18 8 4.3578 -9.8020 1.6964 19 6 6.8027 -9.0605 1.5944 20 6 6.9843 -9.6295 0.3457 21 6 8.2538 -9.7112 -0.0556 22 16 9.3092 -9.0556 1.1895 23 6 7.9255 -8.6896 2.2116 24 6 2.1874 -5.8890 0.3331 25 6 1.4366 -4.7344 0.2311 26 1 -0.4850 0.8400 -0.0004 27 1 3.9526 -2.4846 -0.0008 28 1 5.2812 -4.5470 0.1930 29 1 5.3272 -6.9556 -0.0904 30 1 3.8311 -7.9145 0.0100 31 1 4.5163 -6.6654 2.5208 32 1 6.1603 -9.9777 -0.2595 33 1 8.5836 -10.1213 -0.9987 34 1 7.9771 -8.2345 3.1898 35 1 1.6954 -6.8462 0.4233 36 1 0.3580 -4.7883 0.2417 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795819463.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:02 Heat of formation + Delta-G solvation = -38.850370 kcal Electronic energy + Delta-G solvation = -23414.381003 eV Core-core repulsion = 19697.333341 eV Total energy + Delta-G solvation = -3717.047662 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 339.043 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.19517 -38.16415 -37.37791 -37.04864 -35.95124 -34.69357 -32.35607 -30.28339 -30.15712 -29.52974 -25.81463 -25.04427 -24.51367 -22.06544 -20.87438 -20.70411 -19.16479 -18.61858 -18.08554 -17.63254 -17.11339 -16.88063 -16.04298 -15.20721 -14.81870 -14.60766 -14.40140 -14.11559 -13.82348 -13.73256 -13.58051 -13.52370 -13.10694 -13.00152 -12.80409 -12.55920 -12.25431 -12.17977 -12.11019 -11.86309 -11.72574 -11.34315 -10.99790 -10.89363 -10.75588 -10.72471 -10.49660 -9.64407 -9.52051 -9.40803 -9.13957 -8.92238 -8.28904 -7.33234 -6.53737 -4.12550 0.13440 0.36194 1.18552 1.45593 1.84078 2.12650 2.12863 3.04797 3.08278 3.11972 3.13715 3.63698 3.89498 4.18240 4.46024 4.52438 4.79716 4.97792 5.01127 5.02951 5.18597 5.29290 5.40525 5.53970 5.62028 5.63281 5.75999 5.83850 5.95387 6.12422 6.33048 6.59727 6.79913 6.90039 6.99503 7.15365 7.25793 7.34513 7.71160 7.90894 8.91546 9.59969 10.63814 Molecular weight = 339.04amu Principal moments of inertia in cm(-1) A = 0.018874 B = 0.002382 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.153610 B =11751.171568 C =12508.881777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.393 4.393 8 H 0.093 0.907 9 O -0.173 6.173 10 C 0.160 3.840 11 C -0.238 4.238 12 C -0.053 4.053 13 C -0.206 4.206 14 C 0.176 3.824 15 N -1.107 6.107 16 S 2.708 3.292 17 O -0.963 6.963 18 O -0.954 6.954 19 C -0.683 4.683 20 C -0.074 4.074 21 C -0.220 4.220 22 S 0.139 5.861 23 C -0.090 4.090 24 C -0.054 4.054 25 C -0.195 4.195 26 H 0.271 0.729 27 H 0.128 0.872 28 H 0.108 0.892 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.421 0.579 32 H 0.157 0.843 33 H 0.172 0.828 34 H 0.183 0.817 35 H 0.115 0.885 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.008 -16.386 1.091 23.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.470 4.470 8 H 0.111 0.889 9 O -0.076 6.076 10 C 0.105 3.895 11 C -0.257 4.257 12 C -0.072 4.072 13 C -0.209 4.209 14 C 0.052 3.948 15 N -0.869 5.869 16 S 2.794 3.206 17 O -0.953 6.953 18 O -0.944 6.944 19 C -0.782 4.782 20 C -0.102 4.102 21 C -0.356 4.356 22 S 0.402 5.598 23 C -0.229 4.229 24 C -0.073 4.073 25 C -0.214 4.214 26 H 0.081 0.919 27 H 0.145 0.855 28 H 0.126 0.874 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.257 0.743 32 H 0.174 0.826 33 H 0.190 0.810 34 H 0.201 0.799 35 H 0.133 0.867 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 17.771 -16.753 1.547 24.471 hybrid contribution -0.335 1.225 -0.349 1.317 sum 17.436 -15.527 1.199 23.378 Atomic orbital electron populations 1.70036 1.06015 1.27881 1.45396 1.25320 0.95858 0.98941 0.96359 0.85694 0.78931 0.79936 0.78769 1.19815 1.20182 1.19143 1.21352 0.91852 0.80737 1.53011 0.88929 1.83982 1.34505 1.11567 1.77523 1.19444 0.90333 0.88053 0.91628 1.21147 0.93788 0.98935 1.11819 1.20619 0.98310 0.91643 0.96610 1.19074 0.93523 0.93304 1.14967 1.19991 0.98484 0.96871 0.79480 1.55688 1.81786 1.32904 1.16524 1.01592 0.73098 0.73033 0.72864 1.93585 1.86462 1.86398 1.28889 1.93579 1.63277 1.59680 1.77856 1.30184 1.23007 1.16932 1.08104 1.19790 0.97971 0.98620 0.93820 1.25797 0.96278 1.09321 1.04172 1.84359 1.10017 1.56292 1.09158 1.25798 0.94818 0.99178 1.03057 1.20578 0.92809 0.97001 0.96876 1.20235 0.99744 0.90238 1.11190 0.91864 0.85454 0.87404 0.91871 0.90216 0.74292 0.82599 0.81029 0.79944 0.86678 0.86329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.58 13.67 55.48 0.76 -23.82 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 19.87 29.55 -169.99 -5.02 14.85 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 7 C -0.39 -10.61 9.49 30.89 0.29 -10.32 16 8 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 9 O -0.17 -4.77 9.76 0.03 0.00 -4.77 16 10 C 0.16 3.68 6.65 -39.11 -0.26 3.42 16 11 C -0.24 -4.80 9.17 -39.40 -0.36 -5.16 16 12 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 13 C -0.21 -3.12 5.28 -104.58 -0.55 -3.67 16 14 C 0.18 2.06 6.34 -5.19 -0.03 2.02 16 15 N -1.11 -12.12 5.99 -11.66 -0.07 -12.19 16 16 S 2.71 30.76 5.80 -107.50 -0.62 30.14 16 17 O -0.96 -13.15 17.64 -57.17 -1.01 -14.15 16 18 O -0.95 -13.28 17.11 -57.17 -0.98 -14.26 16 19 C -0.68 -6.65 5.86 -41.21 -0.24 -6.89 16 20 C -0.07 -0.66 9.72 -41.21 -0.40 -1.06 16 21 C -0.22 -1.65 11.23 29.04 0.33 -1.32 16 22 S 0.14 1.00 23.34 -107.50 -2.51 -1.51 16 23 C -0.09 -0.77 10.70 29.04 0.31 -0.46 16 24 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 25 C -0.19 -3.89 9.99 -39.39 -0.39 -4.28 16 26 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.13 2.59 5.64 -52.48 -0.30 2.29 16 28 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 29 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 30 H 0.08 0.88 7.70 -51.93 -0.40 0.48 16 31 H 0.42 4.44 8.64 -34.47 -0.30 4.14 16 32 H 0.16 1.24 7.96 -52.49 -0.42 0.82 16 33 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.18 1.25 8.00 -52.48 -0.42 0.83 16 35 H 0.12 1.63 8.06 -52.48 -0.42 1.21 16 36 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 LS Contribution 345.26 15.07 5.20 5.20 Total: -1.00 -33.40 345.26 -9.78 -43.18 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -3.35 Total: 6.60 kcal Atomic # 6 Polarization: -27.08 SS G_CDS: -2.18 Total: -29.26 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.69 Total: -36.01 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -1.99 Total: -33.18 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Atomic # 16 Polarization: 31.76 SS G_CDS: -3.13 Total: 28.63 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.40 -9.78 -43.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795819463.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.325 kcal (2) G-P(sol) polarization free energy of solvation -33.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds