Wall clock time and date at job start Tue Mar 31 2020 22:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86796 * 120.00073 * 2 1 4 4 H 1.48499 * 109.47023 * 269.99749 * 3 2 1 5 5 H 1.48504 * 109.47353 * 29.99599 * 3 2 1 6 6 H 1.48501 * 109.47345 * 149.99801 * 3 2 1 7 7 C 1.38653 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99926 * 180.02562 * 7 2 1 9 9 O 1.34833 * 120.00056 * 359.97438 * 7 2 1 10 10 C 1.35752 * 116.99794 * 185.05387 * 9 7 2 11 11 C 1.38876 * 120.07145 * 354.47487 * 10 9 7 12 12 C 1.38099 * 119.92977 * 180.02562 * 11 10 9 13 13 C 1.38296 * 120.07222 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.93296 * 179.97438 * 13 12 11 15 15 N 1.46498 * 109.47005 * 89.99872 * 14 13 12 16 16 S 1.65605 * 120.00031 * 165.27600 * 15 14 13 17 17 O 1.42099 * 106.40385 * 178.26276 * 16 15 14 18 18 O 1.42096 * 106.40034 * 311.18361 * 16 15 14 19 19 C 1.76198 * 107.21748 * 64.72318 * 16 15 14 20 20 C 1.38425 * 122.53859 * 269.74156 * 19 16 15 21 21 C 1.33392 * 114.92233 * 179.76146 * 20 19 16 22 22 S 1.75889 * 109.58981 * 0.47378 * 21 20 19 23 23 C 1.33383 * 122.54157 * 90.02303 * 19 16 15 24 24 C 1.38303 * 120.13483 * 0.25024 * 13 12 11 25 25 C 1.38103 * 120.06928 * 359.45374 * 24 13 12 26 26 H 0.96998 * 119.99791 * 0.02562 * 1 2 3 27 27 H 1.08003 * 120.03473 * 359.97438 * 11 10 9 28 28 H 1.08002 * 119.96236 * 179.97438 * 12 11 10 29 29 H 1.08994 * 109.46890 * 329.99794 * 14 13 12 30 30 H 1.08994 * 109.46986 * 209.99500 * 14 13 12 31 31 H 0.97000 * 120.00321 * 344.99958 * 15 14 13 32 32 H 1.08002 * 122.54127 * 359.97438 * 20 19 16 33 33 H 1.07999 * 125.20706 * 180.20308 * 21 20 19 34 34 H 1.08005 * 125.20406 * 0.03034 * 23 19 16 35 35 H 1.08009 * 119.96396 * 179.70886 * 24 13 12 36 36 H 1.08002 * 120.03287 * 180.27094 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0463 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4402 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0016 10 6 2.0700 -3.5045 0.1086 11 6 3.4572 -3.4394 0.0952 12 6 4.2024 -4.5970 0.2038 13 6 3.5687 -5.8203 0.3252 14 6 4.3850 -7.0816 0.4428 15 7 4.6566 -7.3575 1.8557 16 16 5.2096 -8.8488 2.3168 17 8 5.4115 -8.7851 3.7219 18 8 4.3578 -9.8020 1.6964 19 6 6.8027 -9.0605 1.5944 20 6 6.9843 -9.6295 0.3457 21 6 8.2538 -9.7112 -0.0556 22 16 9.3092 -9.0556 1.1895 23 6 7.9255 -8.6896 2.2116 24 6 2.1874 -5.8890 0.3331 25 6 1.4366 -4.7344 0.2311 26 1 -0.4850 0.8400 -0.0004 27 1 3.9526 -2.4846 -0.0008 28 1 5.2812 -4.5470 0.1930 29 1 5.3272 -6.9556 -0.0904 30 1 3.8311 -7.9145 0.0100 31 1 4.5163 -6.6654 2.5208 32 1 6.1603 -9.9777 -0.2595 33 1 8.5836 -10.1213 -0.9987 34 1 7.9771 -8.2345 3.1898 35 1 1.6954 -6.8462 0.4233 36 1 0.3580 -4.7883 0.2417 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795819463.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:02 Heat of formation + Delta-G solvation = -63.054927 kcal Electronic energy + Delta-G solvation = -23415.430591 eV Core-core repulsion = 19697.333341 eV Total energy + Delta-G solvation = -3718.097251 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 339.043 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.80567 -38.81235 -38.66090 -38.27465 -36.94290 -35.86373 -34.24089 -31.79154 -30.93693 -30.74837 -27.57855 -25.95694 -25.60307 -23.61255 -22.17859 -21.57232 -20.04912 -19.81292 -19.23046 -18.92256 -18.43705 -17.73454 -17.02419 -16.47384 -16.35360 -16.02399 -15.56173 -15.48478 -15.10456 -15.06021 -14.49171 -14.36487 -14.19815 -14.12072 -13.88826 -13.63712 -13.48414 -13.44861 -13.21521 -13.13329 -12.92882 -12.56556 -12.43726 -12.32817 -12.14355 -12.04382 -11.67274 -11.17722 -10.79936 -10.46462 -10.17036 -9.77194 -9.71009 -8.97407 -8.47136 -6.15306 -0.70439 -0.29156 0.56305 0.61616 0.67785 0.88253 1.20478 1.36265 1.45121 1.53627 2.17863 2.20365 2.76849 2.85590 3.17996 3.37165 3.51991 3.87475 3.92495 4.07792 4.20443 4.23702 4.46390 4.50674 4.51844 4.61637 4.80667 4.83398 5.00036 5.04596 5.08461 5.16493 5.23934 5.31335 5.57361 5.72203 5.78967 6.03256 6.07193 6.21783 6.97812 7.78395 8.76036 Molecular weight = 339.04amu Principal moments of inertia in cm(-1) A = 0.018874 B = 0.002382 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.153610 B =11751.171568 C =12508.881777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.023 4.023 3 Si 1.019 2.981 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.251 1.251 7 C -0.413 4.413 8 H 0.105 0.895 9 O -0.232 6.232 10 C 0.119 3.881 11 C -0.245 4.245 12 C -0.046 4.046 13 C -0.174 4.174 14 C 0.175 3.825 15 N -1.106 6.106 16 S 2.729 3.271 17 O -0.989 6.989 18 O -0.982 6.982 19 C -0.690 4.690 20 C -0.094 4.094 21 C -0.219 4.219 22 S 0.175 5.825 23 C -0.103 4.103 24 C -0.050 4.050 25 C -0.208 4.208 26 H 0.272 0.728 27 H 0.120 0.880 28 H 0.148 0.852 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.424 0.576 32 H 0.162 0.838 33 H 0.196 0.804 34 H 0.195 0.805 35 H 0.146 0.854 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.811 -18.246 0.802 27.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.175 1.175 7 C -0.489 4.489 8 H 0.122 0.878 9 O -0.138 6.138 10 C 0.069 3.931 11 C -0.265 4.265 12 C -0.064 4.064 13 C -0.177 4.177 14 C 0.050 3.950 15 N -0.868 5.868 16 S 2.819 3.181 17 O -0.979 6.979 18 O -0.972 6.972 19 C -0.792 4.792 20 C -0.122 4.122 21 C -0.354 4.354 22 S 0.437 5.563 23 C -0.242 4.242 24 C -0.069 4.069 25 C -0.228 4.228 26 H 0.081 0.919 27 H 0.138 0.862 28 H 0.166 0.834 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.261 0.739 32 H 0.180 0.820 33 H 0.213 0.787 34 H 0.212 0.788 35 H 0.164 0.836 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 21.581 -18.664 1.272 28.561 hybrid contribution -1.263 1.354 -0.243 1.868 sum 20.318 -17.310 1.029 26.711 Atomic orbital electron populations 1.70187 1.08102 1.28822 1.48812 1.26601 0.96816 1.02824 0.95859 0.84585 0.77852 0.74533 0.79246 1.18801 1.19836 1.17466 1.21846 0.92597 0.81342 1.53085 0.87801 1.83950 1.36141 1.12710 1.81019 1.20003 0.91819 0.87837 0.93481 1.21276 0.92881 1.00299 1.11996 1.21010 1.00133 0.90475 0.94821 1.19532 0.93272 0.94612 1.10269 1.20122 0.99570 0.95101 0.80197 1.55466 1.82257 1.32851 1.16212 1.00632 0.73210 0.72306 0.71987 1.93550 1.87023 1.86639 1.30723 1.93542 1.64918 1.60578 1.78163 1.29826 1.21844 1.18696 1.08869 1.19941 0.98931 0.99551 0.93814 1.26172 0.95899 1.08300 1.05074 1.84319 1.08744 1.55030 1.08158 1.26102 0.95329 0.98944 1.03865 1.20967 0.93621 0.96917 0.95375 1.20457 0.99989 0.90637 1.11681 0.91857 0.86175 0.83428 0.88795 0.88916 0.73935 0.82016 0.78653 0.78833 0.83648 0.87095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.99 13.67 21.61 0.30 -55.69 16 2 C -0.02 -1.31 5.49 84.83 0.47 -0.84 16 3 Si 1.02 41.87 29.55 68.60 2.03 43.90 16 4 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 5 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 7 C -0.41 -23.42 9.49 67.92 0.64 -22.78 16 8 H 0.10 5.34 5.20 -2.91 -0.02 5.33 16 9 O -0.23 -13.65 9.76 -22.79 -0.22 -13.87 16 10 C 0.12 5.69 6.65 22.58 0.15 5.84 16 11 C -0.25 -9.86 9.17 22.39 0.21 -9.66 16 12 C -0.05 -1.36 9.69 22.25 0.22 -1.14 16 13 C -0.17 -4.69 5.28 -19.83 -0.10 -4.79 16 14 C 0.17 3.30 6.34 85.63 0.54 3.84 16 15 N -1.11 -20.51 5.99 -190.80 -1.14 -21.65 16 16 S 2.73 55.54 5.80 -56.49 -0.33 55.21 16 17 O -0.99 -25.34 17.64 -128.00 -2.26 -27.60 16 18 O -0.98 -25.25 17.11 -128.00 -2.19 -27.45 16 19 C -0.69 -11.36 5.86 21.22 0.12 -11.24 16 20 C -0.09 -1.37 9.72 21.22 0.21 -1.16 16 21 C -0.22 -2.43 11.23 66.72 0.75 -1.68 16 22 S 0.17 1.88 23.34 -56.49 -1.32 0.56 16 23 C -0.10 -1.45 10.70 66.72 0.71 -0.74 16 24 C -0.05 -1.56 9.69 22.25 0.22 -1.35 16 25 C -0.21 -8.49 9.99 22.39 0.22 -8.27 16 26 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 27 H 0.12 4.93 5.64 -2.91 -0.02 4.92 16 28 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 29 H 0.09 1.31 8.08 -2.39 -0.02 1.29 16 30 H 0.09 1.62 7.70 -2.39 -0.02 1.60 16 31 H 0.42 7.64 8.64 -96.74 -0.84 6.81 16 32 H 0.16 2.06 7.96 -2.91 -0.02 2.04 16 33 H 0.20 1.11 8.06 -2.91 -0.02 1.09 16 34 H 0.19 2.13 8.00 -2.91 -0.02 2.11 16 35 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16 36 H 0.11 4.56 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -77.61 345.26 -0.48 -78.09 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 0.30 Total: 22.46 kcal Atomic # 6 Polarization: -58.31 SS G_CDS: 4.35 Total: -53.96 kcal Atomic # 7 Polarization: -76.50 SS G_CDS: -0.85 Total: -77.35 kcal Atomic # 8 Polarization: -64.24 SS G_CDS: -4.67 Total: -68.91 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Atomic # 16 Polarization: 57.42 SS G_CDS: -1.65 Total: 55.77 kcal Total: -77.61 -0.48 -78.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795819463.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.038 kcal (2) G-P(sol) polarization free energy of solvation -77.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds