Wall clock time and date at job start Tue Mar 31 2020 22:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00030 * 2 1 4 4 H 1.48507 * 109.47186 * 269.99976 * 3 2 1 5 5 H 1.48501 * 109.47305 * 29.99678 * 3 2 1 6 6 H 1.48495 * 109.47349 * 149.99936 * 3 2 1 7 7 C 1.37883 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99339 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00038 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46880 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47216 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00015 * 0.27523 * 11 10 9 13 13 N 1.34771 * 119.99969 * 180.02562 * 11 10 9 14 14 S 1.65606 * 119.99927 * 175.04422 * 13 11 10 15 15 O 1.42096 * 106.40226 * 177.86426 * 14 13 11 16 16 O 1.42103 * 106.40245 * 310.78750 * 14 13 11 17 17 C 1.76203 * 107.21842 * 64.32687 * 14 13 11 18 18 C 1.31818 * 122.55467 * 244.44115 * 17 14 13 19 19 S 1.75294 * 111.40234 * 179.86011 * 18 17 14 20 20 C 1.75896 * 92.19397 * 0.33937 * 19 18 17 21 21 C 1.39859 * 130.56501 * 179.81047 * 20 19 18 22 22 C 1.37459 * 120.17827 * 179.97438 * 21 20 19 23 23 C 1.38853 * 120.18889 * 0.02562 * 22 21 20 24 24 C 1.36094 * 120.59201 * 0.02562 * 23 22 21 25 25 C 1.39738 * 109.68071 * 359.81759 * 20 19 18 26 26 H 0.96994 * 120.00211 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46925 * 60.00360 * 9 7 2 28 28 H 1.08994 * 109.47368 * 300.00026 * 9 7 2 29 29 H 1.09004 * 109.47008 * 59.99961 * 10 9 7 30 30 H 1.08997 * 109.47637 * 300.00079 * 10 9 7 31 31 H 0.97001 * 120.00332 * 355.04568 * 13 11 10 32 32 H 1.08003 * 124.29804 * 0.02562 * 18 17 14 33 33 H 1.08002 * 119.91246 * 0.02841 * 21 20 19 34 34 H 1.07996 * 119.90601 * 180.02562 * 22 21 20 35 35 H 1.08007 * 119.70171 * 179.97438 * 23 22 21 36 36 H 1.07993 * 119.77320 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0015 11 6 1.4918 -4.9672 0.0020 12 8 0.2790 -4.9673 -0.0025 13 7 2.1657 -6.1344 0.0024 14 16 1.3423 -7.5658 0.1269 15 8 2.3165 -8.5972 0.0478 16 8 0.4503 -7.4216 1.2236 17 6 0.3392 -7.7175 -1.3137 18 6 -0.9780 -7.7281 -1.2630 19 16 -1.6785 -7.8876 -2.8620 20 6 -0.0942 -7.9516 -3.6235 21 6 0.2635 -8.0834 -4.9691 22 6 1.5889 -8.1090 -5.3325 23 6 2.5801 -8.0047 -4.3657 24 6 2.2541 -7.8767 -3.0505 25 6 0.9012 -7.8466 -2.6484 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5575 -0.8880 28 1 0.6247 -2.5563 0.8919 29 1 2.8726 -3.6039 0.8910 30 1 2.8713 -3.6048 -0.8890 31 1 3.1330 -6.1360 -0.0702 32 1 -1.5526 -7.6461 -0.3522 33 1 -0.5038 -8.1645 -5.7249 34 1 1.8601 -8.2106 -6.3729 35 1 3.6191 -8.0262 -4.6599 36 1 3.0357 -7.7970 -2.3096 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813097655.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:11 Heat of formation + Delta-G solvation = -71.824547 kcal Electronic energy + Delta-G solvation = -24386.156917 eV Core-core repulsion = 20667.679387 eV Total energy + Delta-G solvation = -3718.477530 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 339.043 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.82061 -39.68360 -37.33693 -36.07712 -35.58531 -34.29331 -33.61520 -31.33198 -31.07395 -29.73139 -26.06784 -24.54395 -23.09853 -22.63841 -21.75321 -20.38930 -19.48118 -18.64754 -17.80345 -17.36192 -17.02893 -16.15274 -15.87683 -15.67977 -15.28429 -15.00230 -14.86103 -14.52830 -14.15087 -13.97128 -13.87337 -13.14700 -12.80002 -12.73284 -12.49446 -12.27380 -12.20134 -12.15472 -12.05840 -11.79665 -11.32085 -11.15115 -11.00201 -10.95790 -10.66977 -10.61739 -10.12900 -10.09152 -9.97564 -9.51372 -9.18733 -8.86518 -8.39553 -8.23292 -6.03245 -4.08287 0.01391 0.33256 0.92395 1.20198 1.52125 1.60625 2.44981 2.73374 3.29423 3.36115 3.36542 3.38348 3.56399 4.06582 4.36198 4.41278 4.53313 4.64200 4.83227 4.95861 5.03731 5.16239 5.23139 5.32308 5.34721 5.38409 5.64625 5.93297 5.99428 6.00434 6.01581 6.17198 6.53252 6.55715 6.88126 7.63816 7.72015 7.85616 7.96217 8.31315 8.98872 9.55950 11.07635 Molecular weight = 339.04amu Principal moments of inertia in cm(-1) A = 0.012830 B = 0.003459 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.935323 B = 8091.803272 C = 8641.169082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.033 3.967 10 C -0.130 4.130 11 C 0.530 3.470 12 O -0.484 6.484 13 N -1.056 6.056 14 S 2.692 3.308 15 O -0.947 6.947 16 O -0.932 6.932 17 C -0.670 4.670 18 C -0.037 4.037 19 S 0.140 5.860 20 C -0.150 4.150 21 C -0.075 4.075 22 C -0.107 4.107 23 C -0.103 4.103 24 C -0.094 4.094 25 C -0.017 4.017 26 H 0.262 0.738 27 H 0.026 0.974 28 H 0.028 0.972 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.433 0.567 32 H 0.192 0.808 33 H 0.130 0.870 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.420 -19.361 -8.943 21.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.568 4.568 8 H 0.076 0.924 9 C -0.005 4.005 10 C -0.172 4.172 11 C 0.319 3.681 12 O -0.354 6.354 13 N -0.824 5.824 14 S 2.781 3.219 15 O -0.937 6.937 16 O -0.923 6.923 17 C -0.770 4.770 18 C -0.174 4.174 19 S 0.405 5.595 20 C -0.266 4.266 21 C -0.097 4.097 22 C -0.128 4.128 23 C -0.122 4.122 24 C -0.114 4.114 25 C -0.024 4.024 26 H 0.072 0.928 27 H 0.044 0.956 28 H 0.046 0.954 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.269 0.731 32 H 0.209 0.791 33 H 0.148 0.852 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.834 -19.863 -8.749 21.721 hybrid contribution 2.001 1.220 -0.163 2.349 sum 2.834 -18.644 -8.911 20.857 Atomic orbital electron populations 1.69986 1.06085 1.26755 1.49853 1.25017 0.94829 0.99293 0.95132 0.86570 0.79784 0.83381 0.78082 1.20664 1.21193 1.19821 1.21160 0.92982 0.90758 1.51872 0.92414 1.18994 0.93194 0.89353 0.98987 1.22062 1.01044 0.90432 1.03645 1.21743 0.88611 0.85880 0.71858 1.90824 1.13577 1.86707 1.44250 1.55157 1.21743 1.23515 1.81973 1.02205 0.73586 0.72552 0.73524 1.93622 1.59724 1.53340 1.87017 1.93639 1.65375 1.85159 1.48078 1.30435 1.07709 1.22166 1.16704 1.25308 0.96683 0.92315 1.03142 1.84142 1.05008 1.73667 0.96637 1.22793 0.96781 1.09118 0.97912 1.20498 0.96996 0.99838 0.92399 1.21088 0.92018 0.99778 0.99920 1.20732 1.00108 0.99082 0.92301 1.20809 0.93389 0.99890 0.97272 1.18450 0.94005 1.00977 0.88985 0.92847 0.95582 0.95388 0.88878 0.89019 0.73088 0.79137 0.85222 0.84848 0.84798 0.85136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.53 -14.34 9.11 -34.44 -0.31 -14.65 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.82 4.26 -27.88 -0.12 0.70 16 10 C -0.13 -2.39 5.64 -27.88 -0.16 -2.54 16 11 C 0.53 9.31 7.64 -10.99 -0.08 9.23 16 12 O -0.48 -10.26 14.83 -9.25 -0.14 -10.40 16 13 N -1.06 -14.00 5.70 31.22 0.18 -13.82 16 14 S 2.69 39.32 5.18 -107.50 -0.56 38.76 16 15 O -0.95 -13.93 17.35 -57.17 -0.99 -14.92 16 16 O -0.93 -16.46 16.42 -63.93 -1.05 -17.51 16 17 C -0.67 -9.65 5.40 -38.63 -0.21 -9.86 16 18 C -0.04 -0.50 10.48 28.84 0.30 -0.20 16 19 S 0.14 1.64 23.23 -107.50 -2.50 -0.86 16 20 C -0.15 -1.90 6.48 -38.41 -0.25 -2.15 16 21 C -0.08 -0.76 10.07 -39.26 -0.40 -1.16 16 22 C -0.11 -0.95 10.03 -39.64 -0.40 -1.34 16 23 C -0.10 -0.96 9.95 -40.12 -0.40 -1.36 16 24 C -0.09 -1.08 9.67 -39.24 -0.38 -1.46 16 25 C -0.02 -0.23 6.02 -105.38 -0.63 -0.86 16 26 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.03 0.71 8.10 -51.93 -0.42 0.29 16 28 H 0.03 0.78 8.10 -51.93 -0.42 0.35 16 29 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 30 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.43 3.81 8.83 -34.47 -0.30 3.51 16 32 H 0.19 2.34 7.72 -52.48 -0.41 1.93 16 33 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 36 H 0.13 1.29 7.45 -52.49 -0.39 0.90 16 LS Contribution 343.79 15.07 5.18 5.18 Total: -1.00 -36.26 343.79 -10.89 -47.14 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -3.60 Total: 0.32 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: -3.13 Total: -24.09 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.91 Total: -39.67 kcal Atomic # 8 Polarization: -40.65 SS G_CDS: -2.18 Total: -42.83 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 40.96 SS G_CDS: -3.05 Total: 37.91 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.26 -10.89 -47.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813097655.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.680 kcal (2) G-P(sol) polarization free energy of solvation -36.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds