Wall clock time and date at job start Tue Mar 31 2020 22:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00030 * 2 1 4 4 H 1.48507 * 109.47186 * 269.99976 * 3 2 1 5 5 H 1.48501 * 109.47305 * 29.99678 * 3 2 1 6 6 H 1.48495 * 109.47349 * 149.99936 * 3 2 1 7 7 C 1.37883 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99339 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00038 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46880 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47216 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00015 * 0.27523 * 11 10 9 13 13 N 1.34771 * 119.99969 * 180.02562 * 11 10 9 14 14 S 1.65606 * 119.99927 * 175.04422 * 13 11 10 15 15 O 1.42096 * 106.40226 * 177.86426 * 14 13 11 16 16 O 1.42103 * 106.40245 * 310.78750 * 14 13 11 17 17 C 1.76203 * 107.21842 * 64.32687 * 14 13 11 18 18 C 1.31818 * 122.55467 * 244.44115 * 17 14 13 19 19 S 1.75294 * 111.40234 * 179.86011 * 18 17 14 20 20 C 1.75896 * 92.19397 * 0.33937 * 19 18 17 21 21 C 1.39859 * 130.56501 * 179.81047 * 20 19 18 22 22 C 1.37459 * 120.17827 * 179.97438 * 21 20 19 23 23 C 1.38853 * 120.18889 * 0.02562 * 22 21 20 24 24 C 1.36094 * 120.59201 * 0.02562 * 23 22 21 25 25 C 1.39738 * 109.68071 * 359.81759 * 20 19 18 26 26 H 0.96994 * 120.00211 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46925 * 60.00360 * 9 7 2 28 28 H 1.08994 * 109.47368 * 300.00026 * 9 7 2 29 29 H 1.09004 * 109.47008 * 59.99961 * 10 9 7 30 30 H 1.08997 * 109.47637 * 300.00079 * 10 9 7 31 31 H 0.97001 * 120.00332 * 355.04568 * 13 11 10 32 32 H 1.08003 * 124.29804 * 0.02562 * 18 17 14 33 33 H 1.08002 * 119.91246 * 0.02841 * 21 20 19 34 34 H 1.07996 * 119.90601 * 180.02562 * 22 21 20 35 35 H 1.08007 * 119.70171 * 179.97438 * 23 22 21 36 36 H 1.07993 * 119.77320 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0015 11 6 1.4918 -4.9672 0.0020 12 8 0.2790 -4.9673 -0.0025 13 7 2.1657 -6.1344 0.0024 14 16 1.3423 -7.5658 0.1269 15 8 2.3165 -8.5972 0.0478 16 8 0.4503 -7.4216 1.2236 17 6 0.3392 -7.7175 -1.3137 18 6 -0.9780 -7.7281 -1.2630 19 16 -1.6785 -7.8876 -2.8620 20 6 -0.0942 -7.9516 -3.6235 21 6 0.2635 -8.0834 -4.9691 22 6 1.5889 -8.1090 -5.3325 23 6 2.5801 -8.0047 -4.3657 24 6 2.2541 -7.8767 -3.0505 25 6 0.9012 -7.8466 -2.6484 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5575 -0.8880 28 1 0.6247 -2.5563 0.8919 29 1 2.8726 -3.6039 0.8910 30 1 2.8713 -3.6048 -0.8890 31 1 3.1330 -6.1360 -0.0702 32 1 -1.5526 -7.6461 -0.3522 33 1 -0.5038 -8.1645 -5.7249 34 1 1.8601 -8.2106 -6.3729 35 1 3.6191 -8.0262 -4.6599 36 1 3.0357 -7.7970 -2.3096 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813097655.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:11 Heat of formation + Delta-G solvation = -97.417021 kcal Electronic energy + Delta-G solvation = -24387.266690 eV Core-core repulsion = 20667.679387 eV Total energy + Delta-G solvation = -3719.587303 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 339.043 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.17737 -40.58996 -38.57877 -37.32004 -36.48146 -35.64066 -35.60014 -32.97366 -32.09676 -30.57894 -27.96951 -25.48990 -24.41214 -23.89653 -22.67727 -21.96038 -20.69582 -19.56692 -19.17648 -18.73187 -18.17130 -17.84885 -16.98412 -16.69436 -16.46781 -16.37950 -16.16641 -15.78375 -15.51126 -15.03400 -14.75244 -14.42854 -14.34460 -14.10647 -13.88853 -13.55402 -13.43006 -13.32688 -13.28258 -12.84095 -12.81538 -12.66037 -12.47459 -12.24201 -11.93642 -11.87177 -11.77012 -11.71255 -11.35868 -11.12685 -10.92359 -10.53812 -9.71246 -9.10269 -8.16125 -6.29195 -1.13490 -0.61945 0.12270 0.28293 0.61613 0.65259 1.07143 1.45067 1.46937 1.53027 1.57989 2.35514 2.44381 2.62770 3.04033 3.18205 3.30547 3.48473 3.75601 3.94988 3.99979 4.14672 4.25378 4.35151 4.44628 4.45265 4.53472 4.61571 4.90799 5.03249 5.10511 5.28668 5.42387 5.52695 5.63499 5.67069 5.82982 5.86574 6.17123 6.50855 6.90369 7.41110 8.96360 Molecular weight = 339.04amu Principal moments of inertia in cm(-1) A = 0.012830 B = 0.003459 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.935323 B = 8091.803272 C = 8641.169082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.970 3.030 4 H -0.273 1.273 5 H -0.290 1.290 6 H -0.255 1.255 7 C -0.540 4.540 8 H 0.080 0.920 9 C 0.034 3.966 10 C -0.121 4.121 11 C 0.539 3.461 12 O -0.527 6.527 13 N -1.035 6.035 14 S 2.709 3.291 15 O -0.946 6.946 16 O -0.967 6.967 17 C -0.682 4.682 18 C -0.061 4.061 19 S 0.163 5.837 20 C -0.175 4.175 21 C -0.085 4.085 22 C -0.100 4.100 23 C -0.098 4.098 24 C -0.116 4.116 25 C -0.045 4.045 26 H 0.262 0.738 27 H -0.011 1.011 28 H -0.012 1.012 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.454 0.546 32 H 0.192 0.808 33 H 0.152 0.848 34 H 0.170 0.830 35 H 0.168 0.832 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.412 -19.560 -10.842 23.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.202 4.202 3 Si 0.794 3.206 4 H -0.198 1.198 5 H -0.216 1.216 6 H -0.178 1.178 7 C -0.578 4.578 8 H 0.098 0.902 9 C -0.004 4.004 10 C -0.163 4.163 11 C 0.328 3.672 12 O -0.400 6.400 13 N -0.805 5.805 14 S 2.799 3.201 15 O -0.937 6.937 16 O -0.957 6.957 17 C -0.784 4.784 18 C -0.199 4.199 19 S 0.429 5.571 20 C -0.290 4.290 21 C -0.107 4.107 22 C -0.120 4.120 23 C -0.117 4.117 24 C -0.136 4.136 25 C -0.053 4.053 26 H 0.070 0.930 27 H 0.008 0.992 28 H 0.006 0.994 29 H 0.140 0.860 30 H 0.143 0.857 31 H 0.295 0.705 32 H 0.209 0.791 33 H 0.170 0.830 34 H 0.188 0.812 35 H 0.185 0.815 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.900 -20.092 -10.638 23.067 hybrid contribution 1.079 1.199 0.321 1.644 sum 4.979 -18.894 -10.317 22.095 Atomic orbital electron populations 1.70164 1.08258 1.27728 1.51576 1.26072 0.95630 1.03769 0.94758 0.85375 0.78748 0.78021 0.78431 1.19803 1.21591 1.17850 1.21696 0.94165 0.91352 1.50583 0.90208 1.18798 0.93865 0.92302 0.95386 1.21883 0.99654 0.88094 1.06642 1.21527 0.87898 0.86679 0.71099 1.90822 1.15512 1.87402 1.46278 1.54725 1.22965 1.21889 1.80927 1.01521 0.73127 0.72291 0.73134 1.93612 1.59771 1.53143 1.87155 1.93596 1.66325 1.85629 1.50194 1.30357 1.07861 1.23211 1.17013 1.25523 0.97089 0.92868 1.04432 1.83900 1.04947 1.72997 0.95209 1.23138 0.96675 1.10135 0.99074 1.20917 0.98546 0.99460 0.91755 1.21594 0.91199 0.97539 1.01686 1.21214 1.02063 0.97032 0.91403 1.21130 0.92772 1.00832 0.98839 1.18674 0.95353 1.02626 0.88600 0.92959 0.99209 0.99389 0.86039 0.85681 0.70525 0.79111 0.83037 0.81211 0.81455 0.84101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.75 13.29 21.45 0.28 -57.46 16 2 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 3 Si 0.97 42.85 29.54 68.60 2.03 44.87 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 6 H -0.25 -10.40 7.11 99.48 0.71 -9.69 16 7 C -0.54 -29.04 9.11 25.60 0.23 -28.81 16 8 H 0.08 3.85 7.74 -2.91 -0.02 3.82 16 9 C 0.03 1.79 4.26 29.85 0.13 1.91 16 10 C -0.12 -4.31 5.64 29.85 0.17 -4.14 16 11 C 0.54 18.89 7.64 87.66 0.67 19.56 16 12 O -0.53 -23.33 14.83 11.12 0.16 -23.16 16 13 N -1.04 -26.53 5.70 -173.54 -0.99 -27.51 16 14 S 2.71 79.66 5.18 -56.49 -0.29 79.37 16 15 O -0.95 -27.22 17.35 -128.00 -2.22 -29.44 16 16 O -0.97 -35.39 16.42 -121.54 -2.00 -37.38 16 17 C -0.68 -20.12 5.40 23.33 0.13 -19.99 16 18 C -0.06 -1.75 10.48 67.04 0.70 -1.05 16 19 S 0.16 3.91 23.23 -56.49 -1.31 2.60 16 20 C -0.17 -4.30 6.48 23.03 0.15 -4.15 16 21 C -0.08 -1.54 10.07 22.48 0.23 -1.31 16 22 C -0.10 -1.40 10.03 22.23 0.22 -1.18 16 23 C -0.10 -1.51 9.95 21.92 0.22 -1.29 16 24 C -0.12 -2.47 9.67 22.49 0.22 -2.26 16 25 C -0.05 -1.22 6.02 -20.35 -0.12 -1.34 16 26 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 27 H -0.01 -0.62 8.10 -2.39 -0.02 -0.64 16 28 H -0.01 -0.73 8.10 -2.39 -0.02 -0.75 16 29 H 0.12 3.65 8.14 -2.39 -0.02 3.63 16 30 H 0.13 3.62 8.14 -2.39 -0.02 3.60 16 31 H 0.45 7.00 8.83 -96.74 -0.85 6.14 16 32 H 0.19 5.16 7.72 -2.91 -0.02 5.14 16 33 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 34 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 35 H 0.17 1.38 8.06 -2.91 -0.02 1.35 16 36 H 0.14 2.52 7.45 -2.91 -0.02 2.49 16 Total: -1.00 -81.81 343.79 -0.65 -82.46 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 0.28 Total: 9.50 kcal Atomic # 6 Polarization: -47.24 SS G_CDS: 3.40 Total: -43.84 kcal Atomic # 7 Polarization: -84.27 SS G_CDS: -0.70 Total: -84.97 kcal Atomic # 8 Polarization: -85.93 SS G_CDS: -4.05 Total: -89.98 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 16 Polarization: 83.58 SS G_CDS: -1.61 Total: 81.97 kcal Total: -81.81 -0.65 -82.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813097655.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.959 kcal (2) G-P(sol) polarization free energy of solvation -81.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds