Wall clock time and date at job start Tue Mar 31 2020 22:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86800 * 119.99906 * 2 1 4 4 H 1.48495 * 109.47050 * 269.99962 * 3 2 1 5 5 H 1.48498 * 109.47083 * 29.99620 * 3 2 1 6 6 H 1.48502 * 109.47098 * 149.99857 * 3 2 1 7 7 C 1.38949 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99555 * 180.02562 * 7 2 1 9 9 N 1.37094 * 120.00184 * 0.02562 * 7 2 1 10 10 C 1.34781 * 120.00009 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99687 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99727 * 179.97438 * 10 9 7 13 13 S 1.81407 * 109.46863 * 179.97438 * 12 10 9 14 14 C 1.76199 * 102.99817 * 180.02562 * 13 12 10 15 15 C 1.38852 * 120.13360 * 0.23406 * 14 13 12 16 16 C 1.38091 * 120.04978 * 180.23715 * 15 14 13 17 17 C 1.38524 * 120.31244 * 359.78010 * 16 15 14 18 18 Cl 1.73599 * 119.86989 * 180.02562 * 17 16 15 19 19 C 1.38126 * 120.26382 * 359.97438 * 17 16 15 20 20 C 1.39247 * 119.94297 * 0.02562 * 19 17 16 21 21 C 1.48355 * 120.15087 * 179.97438 * 20 19 17 22 22 N 1.34082 * 126.67874 * 179.97438 * 21 20 19 23 23 N 1.28982 * 107.26349 * 180.02562 * 22 21 20 24 24 N 1.28722 * 108.95973 * 359.97438 * 23 22 21 25 25 H 0.96999 * 125.34071 * 180.02562 * 24 23 22 26 26 N 1.28874 * 109.32634 * 359.97438 * 24 23 22 27 27 H 0.96992 * 119.99932 * 0.02562 * 1 2 3 28 28 H 0.97001 * 120.00143 * 0.02562 * 9 7 2 29 29 H 1.09001 * 109.46693 * 60.00418 * 12 10 9 30 30 H 1.08993 * 109.47577 * 300.00195 * 12 10 9 31 31 H 1.08003 * 119.97279 * 359.97438 * 15 14 13 32 32 H 1.07997 * 119.84228 * 179.76468 * 16 15 14 33 33 H 1.08000 * 120.02982 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4455 2.6527 0.6999 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0016 11 8 3.2104 -3.5577 0.0030 12 6 1.2439 -4.8629 0.0022 13 16 2.4228 -6.2417 0.0028 14 6 1.3754 -7.6586 0.0026 15 6 -0.0046 -7.5054 -0.0028 16 6 -0.8238 -8.6170 0.0021 17 6 -0.2759 -9.8893 0.0078 18 17 -1.3165 -11.2788 0.0132 19 6 1.0952 -10.0568 0.0081 20 6 1.9314 -8.9433 0.0032 21 6 3.4046 -9.1179 0.0041 22 7 4.3265 -8.1443 -0.0006 23 7 5.4841 -8.7131 0.0016 24 7 5.3225 -9.9902 0.0081 25 1 6.0370 -10.6461 0.0113 26 7 4.0624 -10.2606 0.0106 27 1 -0.4849 0.8400 -0.0004 28 1 0.3535 -2.3907 -0.0002 29 1 0.6177 -4.9212 -0.8881 30 1 0.6169 -4.9201 0.8918 31 1 -0.4376 -6.5160 -0.0065 32 1 -1.8967 -8.4939 0.0017 33 1 1.5183 -11.0504 0.0129 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822810042.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:54 Heat of formation + Delta-G solvation = 111.476203 kcal Electronic energy + Delta-G solvation = -22848.841509 eV Core-core repulsion = 19065.021197 eV Total energy + Delta-G solvation = -3783.820312 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 339.030 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.52071 -39.40307 -38.18043 -36.68175 -34.52587 -34.05673 -33.73904 -31.56453 -31.18900 -30.70736 -29.21701 -25.14752 -24.70806 -24.56337 -22.78846 -21.92058 -19.75724 -19.26274 -18.12056 -17.68241 -17.21648 -16.75573 -16.04363 -15.70655 -15.11625 -14.68299 -14.57624 -14.39963 -13.96362 -13.88413 -13.87636 -13.50615 -12.61633 -12.50495 -12.34784 -12.06683 -11.98052 -11.86183 -11.53382 -11.40176 -11.19672 -11.10696 -11.08655 -10.97768 -10.43113 -10.28349 -9.60867 -9.60150 -9.57298 -9.08807 -8.60898 -8.07517 -7.16691 -6.49834 -3.91047 0.41561 0.86753 1.11393 1.56105 1.90268 2.16432 2.18614 2.61446 3.13783 3.24025 3.30216 3.35833 3.59711 3.74349 4.06305 4.12093 4.58256 4.72742 4.80345 5.05920 5.07497 5.12689 5.23726 5.40818 5.54902 5.56093 5.61060 5.74541 5.90231 5.93987 6.14142 6.26408 6.35049 7.48746 7.93971 8.08674 8.47687 9.07477 9.40640 9.90285 10.67470 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.013649 B = 0.002854 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.944278 B = 9809.849312 C =11845.640135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.025 3.975 3 Si 0.932 3.068 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.301 4.301 8 H 0.106 0.894 9 N -0.551 5.551 10 C 0.455 3.545 11 O -0.575 6.575 12 C -0.173 4.173 13 S 0.078 5.922 14 C -0.069 4.069 15 C -0.132 4.132 16 C -0.064 4.064 17 C -0.060 4.060 18 Cl -0.070 7.070 19 C -0.048 4.048 20 C -0.005 4.005 21 C 0.216 3.784 22 N -0.239 5.239 23 N -0.045 5.045 24 N -0.230 5.230 25 H 0.474 0.526 26 N -0.296 5.296 27 H 0.273 0.727 28 H 0.394 0.606 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.868 -22.712 0.025 22.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.431 4.431 8 H 0.124 0.876 9 N -0.187 5.187 10 C 0.239 3.761 11 O -0.460 6.460 12 C -0.325 4.325 13 S 0.328 5.672 14 C -0.187 4.187 15 C -0.157 4.157 16 C -0.085 4.085 17 C -0.090 4.090 18 Cl -0.041 7.041 19 C -0.070 4.070 20 C -0.017 4.017 21 C -0.064 4.064 22 N -0.112 5.112 23 N -0.040 5.040 24 N -0.075 5.075 25 H 0.328 0.672 26 N -0.149 5.149 27 H 0.083 0.917 28 H 0.227 0.773 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.161 0.839 32 H 0.158 0.842 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.664 -22.155 0.033 22.217 hybrid contribution -1.902 0.021 -0.009 1.902 sum -0.238 -22.134 0.024 22.135 Atomic orbital electron populations 1.69606 1.05991 1.28422 1.49885 1.25294 0.95663 0.99842 0.96922 0.85824 0.79295 0.80512 0.78507 1.20276 1.20841 1.19254 1.19752 0.93511 0.81905 1.47920 0.87622 1.41760 1.09274 1.04243 1.63448 1.18839 0.87901 0.83632 0.85754 1.90591 1.13183 1.86389 1.55861 1.24128 1.03359 0.98775 1.06190 1.87530 1.03585 0.89593 1.86446 1.22741 0.98053 0.98789 0.99088 1.21169 0.91170 0.99729 1.03652 1.21103 1.00792 0.90127 0.96518 1.20549 0.90749 0.88469 1.09265 1.98366 1.66698 1.41881 1.97169 1.20847 0.90895 0.98648 0.96658 1.16384 0.84907 0.91764 1.08632 1.23440 0.95941 0.84593 1.02383 1.76145 0.93627 1.24991 1.16429 1.79048 1.19754 0.90766 1.14425 1.47747 1.06061 1.07514 1.46199 0.67195 1.74858 0.91367 1.26122 1.22511 0.91689 0.77251 0.87929 0.87923 0.83917 0.84242 0.83800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.80 13.05 55.50 0.72 -23.07 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.67 29.55 -169.99 -5.02 15.65 16 4 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 7 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 8 H 0.11 3.03 7.16 -52.48 -0.38 2.66 16 9 N -0.55 -13.60 5.29 -10.96 -0.06 -13.66 16 10 C 0.45 10.54 7.80 -10.98 -0.09 10.46 16 11 O -0.58 -15.55 15.44 5.54 0.09 -15.46 16 12 C -0.17 -2.93 4.82 36.00 0.17 -2.76 16 13 S 0.08 1.34 18.10 -107.50 -1.95 -0.61 16 14 C -0.07 -0.95 6.14 -38.70 -0.24 -1.19 16 15 C -0.13 -1.50 9.36 -39.41 -0.37 -1.87 16 16 C -0.06 -0.63 9.81 -39.53 -0.39 -1.02 16 17 C -0.06 -0.61 6.31 -39.52 -0.25 -0.86 16 18 Cl -0.07 -0.64 28.95 -51.86 -1.50 -2.14 16 19 C -0.05 -0.52 9.47 -39.25 -0.37 -0.89 16 20 C -0.01 -0.07 5.89 -104.70 -0.62 -0.68 16 21 C 0.22 2.96 7.84 -156.28 -1.22 1.74 16 22 N -0.24 -3.74 9.69 32.14 0.31 -3.43 16 23 N -0.04 -0.58 13.47 60.35 0.81 0.23 16 24 N -0.23 -2.09 7.90 60.35 0.48 -1.61 16 25 H 0.47 1.78 8.96 -340.36 -3.05 -1.27 16 26 N -0.30 -3.31 12.08 32.16 0.39 -2.92 16 27 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 28 H 0.39 9.14 7.90 -40.82 -0.32 8.82 16 29 H 0.10 1.50 7.74 -51.92 -0.40 1.09 16 30 H 0.10 1.50 7.76 -51.93 -0.40 1.09 16 31 H 0.14 1.45 5.88 -52.48 -0.31 1.14 16 32 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 33 H 0.14 1.36 7.88 -52.49 -0.41 0.95 16 LS Contribution 327.10 15.07 4.93 4.93 Total: -1.00 -33.09 327.10 -9.24 -42.33 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -4.83 Total: 4.66 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -3.61 Total: -4.89 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: 2.66 Total: -44.46 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: 0.09 Total: -15.46 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -1.95 Total: -0.61 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.50 Total: -2.14 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.09 -9.24 -42.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822810042.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.805 kcal (2) G-P(sol) polarization free energy of solvation -33.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds