Wall clock time and date at job start Tue Mar 31 2020 22:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86800 * 119.99906 * 2 1 4 4 H 1.48495 * 109.47050 * 269.99962 * 3 2 1 5 5 H 1.48498 * 109.47083 * 29.99620 * 3 2 1 6 6 H 1.48502 * 109.47098 * 149.99857 * 3 2 1 7 7 C 1.38949 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99555 * 180.02562 * 7 2 1 9 9 N 1.37094 * 120.00184 * 0.02562 * 7 2 1 10 10 C 1.34781 * 120.00009 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99687 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99727 * 179.97438 * 10 9 7 13 13 S 1.81407 * 109.46863 * 179.97438 * 12 10 9 14 14 C 1.76199 * 102.99817 * 180.02562 * 13 12 10 15 15 C 1.38852 * 120.13360 * 0.23406 * 14 13 12 16 16 C 1.38091 * 120.04978 * 180.23715 * 15 14 13 17 17 C 1.38524 * 120.31244 * 359.78010 * 16 15 14 18 18 Cl 1.73599 * 119.86989 * 180.02562 * 17 16 15 19 19 C 1.38126 * 120.26382 * 359.97438 * 17 16 15 20 20 C 1.39247 * 119.94297 * 0.02562 * 19 17 16 21 21 C 1.48355 * 120.15087 * 179.97438 * 20 19 17 22 22 N 1.34082 * 126.67874 * 179.97438 * 21 20 19 23 23 N 1.28982 * 107.26349 * 180.02562 * 22 21 20 24 24 N 1.28722 * 108.95973 * 359.97438 * 23 22 21 25 25 H 0.96999 * 125.34071 * 180.02562 * 24 23 22 26 26 N 1.28874 * 109.32634 * 359.97438 * 24 23 22 27 27 H 0.96992 * 119.99932 * 0.02562 * 1 2 3 28 28 H 0.97001 * 120.00143 * 0.02562 * 9 7 2 29 29 H 1.09001 * 109.46693 * 60.00418 * 12 10 9 30 30 H 1.08993 * 109.47577 * 300.00195 * 12 10 9 31 31 H 1.08003 * 119.97279 * 359.97438 * 15 14 13 32 32 H 1.07997 * 119.84228 * 179.76468 * 16 15 14 33 33 H 1.08000 * 120.02982 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4455 2.6527 0.6999 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0016 11 8 3.2104 -3.5577 0.0030 12 6 1.2439 -4.8629 0.0022 13 16 2.4228 -6.2417 0.0028 14 6 1.3754 -7.6586 0.0026 15 6 -0.0046 -7.5054 -0.0028 16 6 -0.8238 -8.6170 0.0021 17 6 -0.2759 -9.8893 0.0078 18 17 -1.3165 -11.2788 0.0132 19 6 1.0952 -10.0568 0.0081 20 6 1.9314 -8.9433 0.0032 21 6 3.4046 -9.1179 0.0041 22 7 4.3265 -8.1443 -0.0006 23 7 5.4841 -8.7131 0.0016 24 7 5.3225 -9.9902 0.0081 25 1 6.0370 -10.6461 0.0113 26 7 4.0624 -10.2606 0.0106 27 1 -0.4849 0.8400 -0.0004 28 1 0.3535 -2.3907 -0.0002 29 1 0.6177 -4.9212 -0.8881 30 1 0.6169 -4.9201 0.8918 31 1 -0.4376 -6.5160 -0.0065 32 1 -1.8967 -8.4939 0.0017 33 1 1.5183 -11.0504 0.0129 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822810042.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:54 Heat of formation + Delta-G solvation = 88.883605 kcal Electronic energy + Delta-G solvation = -22849.821197 eV Core-core repulsion = 19065.021197 eV Total energy + Delta-G solvation = -3784.800000 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 339.030 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.46818 -40.29201 -40.07111 -37.47186 -36.04435 -35.47328 -34.68252 -33.40300 -32.27694 -31.60414 -30.69881 -26.72433 -25.88519 -25.65016 -23.68817 -22.88898 -21.41403 -20.32183 -19.97678 -18.78023 -18.15766 -17.76587 -17.71601 -16.72874 -16.45290 -16.23897 -16.14123 -15.71339 -15.24947 -14.89839 -14.81958 -14.72022 -14.21474 -13.76135 -13.62854 -13.45564 -13.02450 -12.94049 -12.88450 -12.74115 -12.43385 -12.37537 -12.18153 -12.08938 -11.89260 -11.88564 -11.54709 -10.78183 -10.52389 -10.49925 -10.05894 -9.96145 -8.49327 -8.36686 -5.98185 -0.48900 -0.01022 0.16731 0.36356 1.08327 1.21786 1.37362 1.42822 1.43656 1.45102 1.55735 1.95318 2.29871 2.46640 2.66634 3.11058 3.12116 3.17182 3.73689 3.90248 4.14000 4.17371 4.18665 4.19936 4.32276 4.42968 4.49905 4.74704 4.86170 5.04744 5.08920 5.40429 5.50337 5.62275 5.93850 6.52821 7.07625 7.12290 7.47051 8.02089 8.67752 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.013649 B = 0.002854 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.944278 B = 9809.849312 C =11845.640135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.007 4.007 3 Si 0.992 3.008 4 H -0.270 1.270 5 H -0.269 1.269 6 H -0.274 1.274 7 C -0.336 4.336 8 H 0.080 0.920 9 N -0.560 5.560 10 C 0.453 3.547 11 O -0.619 6.619 12 C -0.154 4.154 13 S 0.013 5.987 14 C -0.075 4.075 15 C -0.129 4.129 16 C -0.056 4.056 17 C -0.054 4.054 18 Cl -0.055 7.055 19 C -0.046 4.046 20 C -0.015 4.015 21 C 0.202 3.798 22 N -0.281 5.281 23 N -0.061 5.061 24 N -0.196 5.196 25 H 0.495 0.505 26 N -0.284 5.284 27 H 0.280 0.720 28 H 0.400 0.600 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.156 0.844 32 H 0.169 0.831 33 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.571 -24.288 0.012 24.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.208 4.208 3 Si 0.815 3.185 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.465 4.465 8 H 0.098 0.902 9 N -0.196 5.196 10 C 0.239 3.761 11 O -0.506 6.506 12 C -0.305 4.305 13 S 0.262 5.738 14 C -0.192 4.192 15 C -0.154 4.154 16 C -0.078 4.078 17 C -0.084 4.084 18 Cl -0.026 7.026 19 C -0.068 4.068 20 C -0.026 4.026 21 C -0.078 4.078 22 N -0.152 5.152 23 N -0.056 5.056 24 N -0.047 5.047 25 H 0.354 0.646 26 N -0.138 5.138 27 H 0.089 0.911 28 H 0.235 0.765 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.174 0.826 32 H 0.186 0.814 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.063 -23.771 0.019 23.771 hybrid contribution -1.388 0.226 -0.005 1.406 sum -1.451 -23.545 0.013 23.590 Atomic orbital electron populations 1.69654 1.06743 1.29509 1.49625 1.26018 0.96548 1.02300 0.95938 0.84946 0.77941 0.76877 0.78716 1.19582 1.19373 1.19845 1.19683 0.92797 0.83749 1.50296 0.90211 1.41786 1.09464 1.04231 1.64143 1.19785 0.87740 0.85176 0.83395 1.90562 1.15513 1.87487 1.57028 1.23883 1.02762 0.95107 1.08727 1.87806 1.05750 0.91817 1.88458 1.22522 0.98316 0.97083 1.01324 1.21371 0.90193 1.01022 1.02804 1.21396 1.02068 0.89308 0.94982 1.20697 0.90732 0.89256 1.07744 1.98381 1.66083 1.41104 1.97003 1.20962 0.91089 0.98542 0.96200 1.16562 0.84961 0.92137 1.08941 1.23669 0.96409 0.84756 1.02959 1.76116 0.94555 1.26480 1.18075 1.78977 1.19270 0.92004 1.15369 1.47809 1.06250 1.07144 1.43510 0.64574 1.74822 0.91796 1.25160 1.22015 0.91095 0.76536 0.85236 0.85239 0.82604 0.81371 0.82448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.12 13.05 21.66 0.28 -47.84 16 2 C -0.01 -0.39 5.50 84.93 0.47 0.08 16 3 Si 0.99 42.40 29.55 68.60 2.03 44.43 16 4 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.34 -18.85 9.68 84.04 0.81 -18.03 16 8 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 9 N -0.56 -28.15 5.29 -306.98 -1.62 -29.77 16 10 C 0.45 21.49 7.80 87.66 0.68 22.18 16 11 O -0.62 -34.90 15.44 -3.07 -0.05 -34.94 16 12 C -0.15 -5.15 4.82 71.24 0.34 -4.81 16 13 S 0.01 0.47 18.10 -56.49 -1.02 -0.55 16 14 C -0.08 -2.01 6.14 22.84 0.14 -1.87 16 15 C -0.13 -2.64 9.36 22.38 0.21 -2.43 16 16 C -0.06 -0.92 9.81 22.30 0.22 -0.70 16 17 C -0.05 -0.94 6.31 22.31 0.14 -0.80 16 18 Cl -0.05 -0.83 28.95 -2.72 -0.08 -0.91 16 19 C -0.05 -0.90 9.47 22.49 0.21 -0.68 16 20 C -0.02 -0.38 5.89 -19.92 -0.12 -0.49 16 21 C 0.20 5.48 7.84 137.32 1.08 6.55 16 22 N -0.28 -8.98 9.69 -52.22 -0.51 -9.49 16 23 N -0.06 -1.61 13.47 37.02 0.50 -1.11 16 24 N -0.20 -3.37 7.90 37.02 0.29 -3.08 16 25 H 0.49 2.95 8.96 -347.53 -3.12 -0.17 16 26 N -0.28 -6.04 12.08 -52.17 -0.63 -6.67 16 27 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 28 H 0.40 18.70 7.90 -92.71 -0.73 17.96 16 29 H 0.13 3.60 7.74 -2.39 -0.02 3.58 16 30 H 0.13 3.60 7.76 -2.39 -0.02 3.58 16 31 H 0.16 2.71 5.88 -2.91 -0.02 2.70 16 32 H 0.17 1.81 8.06 -2.91 -0.02 1.78 16 33 H 0.16 2.59 7.88 -2.91 -0.02 2.57 16 Total: -1.00 -73.76 327.10 0.76 -73.00 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -2.62 Total: 17.95 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: 4.19 Total: -1.01 kcal Atomic # 7 Polarization: -96.27 SS G_CDS: -1.69 Total: -97.96 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: -0.05 Total: -34.94 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 16 Polarization: 0.47 SS G_CDS: -1.02 Total: -0.55 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.08 Total: -0.91 kcal Total: -73.76 0.76 -73.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822810042.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.884 kcal (2) G-P(sol) polarization free energy of solvation -73.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds