Wall clock time and date at job start Tue Mar 31 2020 22:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 119.99854 * 2 1 4 4 H 1.48499 * 109.47147 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47534 * 120.00065 * 3 2 1 6 6 H 1.48504 * 109.46876 * 239.99664 * 3 2 1 7 7 C 1.37880 * 120.00048 * 179.72141 * 2 1 3 8 8 H 1.07996 * 119.99618 * 342.16493 * 7 2 1 9 9 C 1.50694 * 119.99846 * 162.17109 * 7 2 1 10 10 H 1.09002 * 109.49857 * 54.36919 * 9 7 2 11 11 C 1.53046 * 109.49658 * 174.43521 * 9 7 2 12 12 C 1.53045 * 109.53621 * 181.31673 * 11 9 7 13 13 C 1.53183 * 109.31106 * 298.63149 * 12 11 9 14 14 N 1.46924 * 108.77938 * 54.63920 * 13 12 11 15 15 C 1.34767 * 120.63463 * 126.41221 * 14 13 12 16 16 O 1.21480 * 120.00216 * 175.45353 * 15 14 13 17 17 C 1.48497 * 119.99945 * 355.44909 * 15 14 13 18 18 N 1.32472 * 119.17078 * 41.64297 * 17 15 14 19 19 C 1.32084 * 120.77964 * 179.72182 * 18 17 15 20 20 C 1.38914 * 119.14905 * 0.53438 * 19 18 17 21 21 Br 1.89104 * 120.75945 * 179.75577 * 20 19 18 22 22 C 1.38923 * 118.48340 * 359.73534 * 20 19 18 23 23 N 1.32076 * 119.14943 * 359.97438 * 22 20 19 24 24 C 1.46927 * 118.73488 * 306.39070 * 14 13 12 25 25 H 0.97005 * 120.00315 * 173.15929 * 1 2 3 26 26 H 1.09000 * 109.45419 * 301.33257 * 11 9 7 27 27 H 1.08990 * 109.46119 * 61.29116 * 11 9 7 28 28 H 1.09000 * 109.50008 * 58.58477 * 12 11 9 29 29 H 1.09002 * 109.49127 * 178.64770 * 12 11 9 30 30 H 1.08998 * 109.58560 * 174.42809 * 13 12 11 31 31 H 1.09007 * 109.58657 * 294.84905 * 13 12 11 32 32 H 1.08005 * 120.42435 * 180.27281 * 19 18 17 33 33 H 1.07997 * 120.42560 * 179.97438 * 22 20 19 34 34 H 1.09000 * 109.58933 * 293.81498 * 24 14 13 35 35 H 1.09001 * 109.58848 * 173.39500 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 1.2840 2.7464 -0.0006 5 1 3.1028 1.6965 1.2124 6 1 3.1028 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0058 8 1 1.5034 -2.1054 0.2967 9 6 3.4571 -1.2273 -0.3936 10 1 4.0168 -0.5126 0.2098 11 6 4.0165 -2.6341 -0.1692 12 6 5.5003 -2.6606 -0.5436 13 6 5.6548 -2.3097 -2.0267 14 7 4.9916 -1.0234 -2.2801 15 6 5.6571 -0.0127 -2.8730 16 8 5.0753 1.0167 -3.1519 17 6 7.1016 -0.1571 -3.1854 18 7 7.5443 -1.3048 -3.6772 19 6 8.8218 -1.4662 -3.9714 20 6 9.7052 -0.4176 -3.7484 21 35 11.5447 -0.6013 -4.1468 22 6 9.2064 0.7694 -3.2265 23 7 7.9161 0.8633 -2.9608 24 6 3.5887 -0.8602 -1.8751 25 1 -0.4851 -0.8341 -0.1001 26 1 3.9018 -2.9073 0.8797 27 1 3.4723 -3.3447 -0.7911 28 1 6.0411 -1.9324 0.0608 29 1 5.9037 -3.6565 -0.3608 30 1 6.7132 -2.2303 -2.2750 31 1 5.1917 -3.0860 -2.6360 32 1 9.1757 -2.4028 -4.3763 33 1 9.8653 1.6045 -3.0404 34 1 2.9571 -1.5181 -2.4720 35 1 3.2837 0.1757 -2.0233 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824746045.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:00 Heat of formation + Delta-G solvation = 28.417845 kcal Electronic energy + Delta-G solvation = -21453.014101 eV Core-core repulsion = 18111.951895 eV Total energy + Delta-G solvation = -3341.062206 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.032 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.71538 -39.44819 -37.05416 -34.52224 -33.81465 -33.26745 -31.99401 -30.67520 -30.11623 -26.13042 -25.30547 -24.85992 -23.85486 -21.89011 -20.59350 -18.99480 -18.34072 -17.74364 -17.35119 -16.59968 -15.88197 -15.35231 -15.04253 -14.47811 -14.21556 -14.03011 -13.85716 -13.54896 -13.25355 -12.84985 -12.47418 -12.13724 -11.83084 -11.69972 -11.57967 -11.23753 -11.15790 -10.94658 -10.46294 -10.35012 -10.26965 -9.85991 -9.74157 -9.69809 -9.59243 -9.42179 -8.90346 -8.30379 -8.16671 -6.46016 -4.13189 -0.07958 0.52044 0.84419 2.50683 2.77811 3.22882 3.49218 3.57574 3.69044 3.74741 3.86821 3.94171 4.22203 4.52802 4.55488 5.06581 5.20636 5.24100 5.34919 5.53973 5.57175 5.89857 6.01542 6.08457 6.19975 6.28132 6.39182 6.56290 6.61489 6.74226 6.79334 7.15244 7.37766 7.39073 7.70113 8.03319 8.30070 8.34682 8.85582 9.54920 10.89828 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.027644 B = 0.003060 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.651499 B = 9147.046496 C = 9729.033510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.039 3.961 3 Si 1.022 2.978 4 H -0.284 1.284 5 H -0.284 1.284 6 H -0.259 1.259 7 C -0.600 4.600 8 H 0.060 0.940 9 C 0.011 3.989 10 H 0.025 0.975 11 C -0.101 4.101 12 C -0.139 4.139 13 C 0.102 3.898 14 N -0.582 5.582 15 C 0.575 3.425 16 O -0.507 6.507 17 C 0.317 3.683 18 N -0.479 5.479 19 C 0.177 3.823 20 C -0.202 4.202 21 Br -0.011 7.011 22 C 0.184 3.816 23 N -0.466 5.466 24 C 0.101 3.899 25 H 0.269 0.731 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.185 0.815 33 H 0.185 0.815 34 H 0.068 0.932 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.507 -4.964 -9.057 28.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.167 4.167 3 Si 0.850 3.150 4 H -0.210 1.210 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.638 4.638 8 H 0.078 0.922 9 C -0.008 4.008 10 H 0.043 0.957 11 C -0.138 4.138 12 C -0.177 4.177 13 C -0.021 4.021 14 N -0.314 5.314 15 C 0.356 3.644 16 O -0.380 6.380 17 C 0.047 3.953 18 N -0.196 5.196 19 C 0.009 3.991 20 C -0.286 4.286 21 Br 0.073 6.927 22 C 0.015 3.985 23 N -0.181 5.181 24 C -0.019 4.019 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.202 0.798 33 H 0.201 0.799 34 H 0.086 0.914 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 25.592 -2.720 -9.034 27.276 hybrid contribution 0.867 -1.853 -0.200 2.056 sum 26.459 -4.573 -9.234 28.395 Atomic orbital electron populations 1.70834 1.07217 1.30707 1.44403 1.25752 0.96030 1.02349 0.92600 0.84371 0.75966 0.76448 0.78264 1.20981 1.21019 1.18426 1.21899 0.94237 0.96793 1.50858 0.92151 1.19322 0.97909 0.93064 0.90536 0.95655 1.21466 0.92418 0.99253 1.00713 1.22048 0.99428 1.00774 0.95495 1.22082 0.98512 0.84921 0.96590 1.48374 1.14274 1.12212 1.56500 1.17287 0.82760 0.84366 0.79942 1.90841 1.66742 1.28160 1.52278 1.23498 0.96641 0.84520 0.90623 1.68749 1.15510 1.23411 1.11929 1.23483 0.87481 0.97945 0.90157 1.24020 0.94836 1.00535 1.09201 1.96814 1.04543 1.98051 1.93277 1.23501 0.91377 0.95312 0.88300 1.68483 1.03524 1.30216 1.15834 1.22961 0.76351 1.03942 0.98626 0.92062 0.92459 0.92679 0.92342 0.91648 0.89140 0.90935 0.79840 0.79854 0.91397 0.88767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.43 13.69 55.43 0.76 -26.67 16 2 C 0.04 1.13 5.34 -17.82 -0.10 1.03 16 3 Si 1.02 26.00 26.46 -169.99 -4.50 21.50 16 4 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.26 -6.51 5.52 56.52 0.31 -6.20 16 7 C -0.60 -16.43 8.82 -34.44 -0.30 -16.74 16 8 H 0.06 1.76 7.99 -52.49 -0.42 1.34 16 9 C 0.01 0.27 1.83 -91.65 -0.17 0.10 16 10 H 0.03 0.62 6.79 -51.93 -0.35 0.26 16 11 C -0.10 -1.92 5.11 -26.68 -0.14 -2.06 16 12 C -0.14 -2.14 6.08 -26.61 -0.16 -2.30 16 13 C 0.10 1.55 6.03 -3.72 -0.02 1.53 16 14 N -0.58 -11.16 2.97 -173.64 -0.52 -11.67 16 15 C 0.58 11.40 7.58 -12.03 -0.09 11.31 16 16 O -0.51 -11.89 16.51 5.38 0.09 -11.80 16 17 C 0.32 5.05 6.81 -157.07 -1.07 3.98 16 18 N -0.48 -6.15 7.37 -11.10 -0.08 -6.23 16 19 C 0.18 1.62 11.09 -17.19 -0.19 1.43 16 20 C -0.20 -1.75 6.28 -39.08 -0.25 -2.00 16 21 Br -0.01 -0.07 33.77 -68.01 -2.30 -2.37 16 22 C 0.18 1.88 11.09 -17.19 -0.19 1.69 16 23 N -0.47 -6.93 10.33 -11.10 -0.11 -7.05 16 24 C 0.10 2.25 5.37 -3.71 -0.02 2.23 16 25 H 0.27 8.10 8.73 -40.82 -0.36 7.75 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.09 1.23 4.59 -51.93 -0.24 0.99 16 31 H 0.07 1.03 8.14 -51.92 -0.42 0.60 16 32 H 0.18 1.03 8.06 -52.48 -0.42 0.60 16 33 H 0.18 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.09 2.35 3.76 -51.93 -0.20 2.15 16 LS Contribution 309.09 15.07 4.66 4.66 Total: -1.00 -32.68 309.09 -8.53 -41.21 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -3.83 Total: -1.79 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -2.69 Total: 0.21 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: 0.05 Total: -51.62 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.80 kcal Atomic # 14 Polarization: 26.00 SS G_CDS: -4.50 Total: 21.50 kcal Atomic # 35 Polarization: -0.07 SS G_CDS: -2.30 Total: -2.37 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.68 -8.53 -41.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824746045.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.627 kcal (2) G-P(sol) polarization free energy of solvation -32.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds