Wall clock time and date at job start Tue Mar 31 2020 22:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 119.99854 * 2 1 4 4 H 1.48499 * 109.47147 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47534 * 120.00065 * 3 2 1 6 6 H 1.48504 * 109.46876 * 239.99664 * 3 2 1 7 7 C 1.37880 * 120.00048 * 179.72141 * 2 1 3 8 8 H 1.07996 * 119.99618 * 342.16493 * 7 2 1 9 9 C 1.50694 * 119.99846 * 162.17109 * 7 2 1 10 10 H 1.09002 * 109.49857 * 54.36919 * 9 7 2 11 11 C 1.53046 * 109.49658 * 174.43521 * 9 7 2 12 12 C 1.53045 * 109.53621 * 181.31673 * 11 9 7 13 13 C 1.53183 * 109.31106 * 298.63149 * 12 11 9 14 14 N 1.46924 * 108.77938 * 54.63920 * 13 12 11 15 15 C 1.34767 * 120.63463 * 126.41221 * 14 13 12 16 16 O 1.21480 * 120.00216 * 175.45353 * 15 14 13 17 17 C 1.48497 * 119.99945 * 355.44909 * 15 14 13 18 18 N 1.32472 * 119.17078 * 41.64297 * 17 15 14 19 19 C 1.32084 * 120.77964 * 179.72182 * 18 17 15 20 20 C 1.38914 * 119.14905 * 0.53438 * 19 18 17 21 21 Br 1.89104 * 120.75945 * 179.75577 * 20 19 18 22 22 C 1.38923 * 118.48340 * 359.73534 * 20 19 18 23 23 N 1.32076 * 119.14943 * 359.97438 * 22 20 19 24 24 C 1.46927 * 118.73488 * 306.39070 * 14 13 12 25 25 H 0.97005 * 120.00315 * 173.15929 * 1 2 3 26 26 H 1.09000 * 109.45419 * 301.33257 * 11 9 7 27 27 H 1.08990 * 109.46119 * 61.29116 * 11 9 7 28 28 H 1.09000 * 109.50008 * 58.58477 * 12 11 9 29 29 H 1.09002 * 109.49127 * 178.64770 * 12 11 9 30 30 H 1.08998 * 109.58560 * 174.42809 * 13 12 11 31 31 H 1.09007 * 109.58657 * 294.84905 * 13 12 11 32 32 H 1.08005 * 120.42435 * 180.27281 * 19 18 17 33 33 H 1.07997 * 120.42560 * 179.97438 * 22 20 19 34 34 H 1.09000 * 109.58933 * 293.81498 * 24 14 13 35 35 H 1.09001 * 109.58848 * 173.39500 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 1.2840 2.7464 -0.0006 5 1 3.1028 1.6965 1.2124 6 1 3.1028 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0058 8 1 1.5034 -2.1054 0.2967 9 6 3.4571 -1.2273 -0.3936 10 1 4.0168 -0.5126 0.2098 11 6 4.0165 -2.6341 -0.1692 12 6 5.5003 -2.6606 -0.5436 13 6 5.6548 -2.3097 -2.0267 14 7 4.9916 -1.0234 -2.2801 15 6 5.6571 -0.0127 -2.8730 16 8 5.0753 1.0167 -3.1519 17 6 7.1016 -0.1571 -3.1854 18 7 7.5443 -1.3048 -3.6772 19 6 8.8218 -1.4662 -3.9714 20 6 9.7052 -0.4176 -3.7484 21 35 11.5447 -0.6013 -4.1468 22 6 9.2064 0.7694 -3.2265 23 7 7.9161 0.8633 -2.9608 24 6 3.5887 -0.8602 -1.8751 25 1 -0.4851 -0.8341 -0.1001 26 1 3.9018 -2.9073 0.8797 27 1 3.4723 -3.3447 -0.7911 28 1 6.0411 -1.9324 0.0608 29 1 5.9037 -3.6565 -0.3608 30 1 6.7132 -2.2303 -2.2750 31 1 5.1917 -3.0860 -2.6360 32 1 9.1757 -2.4028 -4.3763 33 1 9.8653 1.6045 -3.0404 34 1 2.9571 -1.5181 -2.4720 35 1 3.2837 0.1757 -2.0233 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824746045.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:00 Heat of formation + Delta-G solvation = 6.243667 kcal Electronic energy + Delta-G solvation = -21453.975645 eV Core-core repulsion = 18111.951895 eV Total energy + Delta-G solvation = -3342.023750 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.032 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.70602 -40.87768 -38.62956 -35.72945 -35.12570 -34.51284 -33.61113 -32.18888 -31.11458 -27.48175 -26.74922 -26.00682 -25.16855 -23.45263 -22.01093 -20.56350 -19.78463 -19.32186 -18.72493 -17.78859 -16.92180 -16.64006 -16.06387 -15.90719 -15.78961 -15.32200 -15.30612 -14.97217 -14.91770 -14.36384 -13.95628 -13.85509 -13.26664 -12.84130 -12.66487 -12.62962 -12.42208 -12.19420 -12.04696 -11.82744 -11.70204 -11.60030 -11.40547 -11.17326 -10.90585 -10.57901 -10.52452 -10.39657 -9.73720 -8.74541 -6.41587 -1.01144 -0.26508 0.15088 1.19992 1.40744 1.47854 1.52167 1.63648 2.24633 2.40141 2.64591 2.91577 2.99482 3.17510 3.47186 3.52556 3.94927 4.06216 4.13590 4.39282 4.41206 4.48961 4.61533 4.69768 4.80629 4.90138 4.93403 5.08903 5.14377 5.29567 5.42081 5.48929 5.57032 6.00530 6.04363 6.17918 6.49529 6.56794 6.81980 7.32347 8.60264 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.027644 B = 0.003060 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.651499 B = 9147.046496 C = 9729.033510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.004 4.004 3 Si 1.059 2.941 4 H -0.287 1.287 5 H -0.266 1.266 6 H -0.259 1.259 7 C -0.595 4.595 8 H 0.035 0.965 9 C 0.010 3.990 10 H 0.016 0.984 11 C -0.098 4.098 12 C -0.129 4.129 13 C 0.100 3.900 14 N -0.584 5.584 15 C 0.569 3.431 16 O -0.559 6.559 17 C 0.297 3.703 18 N -0.484 5.484 19 C 0.182 3.818 20 C -0.184 4.184 21 Br 0.022 6.978 22 C 0.180 3.820 23 N -0.499 5.499 24 C 0.111 3.889 25 H 0.260 0.740 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.107 0.893 30 H 0.114 0.886 31 H 0.088 0.912 32 H 0.225 0.775 33 H 0.214 0.786 34 H 0.063 0.937 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.909 -6.388 -9.806 33.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.883 3.117 4 H -0.213 1.213 5 H -0.191 1.191 6 H -0.185 1.185 7 C -0.633 4.633 8 H 0.053 0.947 9 C -0.010 4.010 10 H 0.034 0.966 11 C -0.136 4.136 12 C -0.167 4.167 13 C -0.021 4.021 14 N -0.315 5.315 15 C 0.353 3.647 16 O -0.436 6.436 17 C 0.028 3.972 18 N -0.201 5.201 19 C 0.015 3.985 20 C -0.269 4.269 21 Br 0.106 6.894 22 C 0.013 3.987 23 N -0.215 5.215 24 C -0.011 4.011 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.125 0.875 30 H 0.132 0.868 31 H 0.106 0.894 32 H 0.242 0.758 33 H 0.230 0.770 34 H 0.081 0.919 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 30.056 -4.191 -9.774 31.882 hybrid contribution -0.299 -1.504 -0.039 1.534 sum 29.757 -5.695 -9.814 31.847 Atomic orbital electron populations 1.70913 1.08229 1.30188 1.47512 1.26717 0.96062 1.05219 0.92449 0.83851 0.75214 0.73723 0.78888 1.21272 1.19136 1.18470 1.22136 0.96453 0.95400 1.49277 0.94654 1.19269 0.95164 0.95790 0.90785 0.96607 1.21390 0.95242 0.96154 1.00788 1.21994 0.96271 1.03125 0.95278 1.22385 0.99717 0.83221 0.96820 1.48333 1.13102 1.13819 1.56251 1.17842 0.84601 0.83407 0.78830 1.90792 1.68518 1.30018 1.54235 1.22487 0.94663 0.86329 0.93754 1.68638 1.17422 1.22040 1.12026 1.24163 0.86013 0.99415 0.88929 1.24183 0.96385 0.99597 1.06690 1.96884 1.01734 1.97910 1.92853 1.24001 0.90046 0.96915 0.87755 1.68356 1.05440 1.30510 1.17170 1.22398 0.78797 1.01924 0.97932 0.93103 0.92673 0.92531 0.92685 0.87476 0.86818 0.89403 0.75821 0.76997 0.91851 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.11 13.69 21.45 0.29 -58.81 16 2 C 0.00 -0.23 5.34 84.66 0.45 0.23 16 3 Si 1.06 54.47 26.46 68.60 1.81 56.29 16 4 H -0.29 -14.77 7.11 99.48 0.71 -14.06 16 5 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.26 -13.39 5.52 99.48 0.55 -12.84 16 7 C -0.59 -33.53 8.82 25.60 0.23 -33.31 16 8 H 0.04 2.13 7.99 -2.91 -0.02 2.10 16 9 C 0.01 0.45 1.83 -11.46 -0.02 0.43 16 10 H 0.02 0.78 6.79 -2.39 -0.02 0.76 16 11 C -0.10 -3.62 5.11 30.62 0.16 -3.46 16 12 C -0.13 -3.56 6.08 30.67 0.19 -3.37 16 13 C 0.10 2.77 6.03 86.36 0.52 3.29 16 14 N -0.58 -22.18 2.97 -821.59 -2.44 -24.62 16 15 C 0.57 22.72 7.58 86.98 0.66 23.38 16 16 O -0.56 -27.15 16.51 -3.65 -0.06 -27.21 16 17 C 0.30 9.11 6.81 137.66 0.94 10.04 16 18 N -0.48 -11.05 7.37 -189.04 -1.39 -12.44 16 19 C 0.18 2.57 11.09 84.82 0.94 3.51 16 20 C -0.18 -2.48 6.28 22.60 0.14 -2.34 16 21 Br 0.02 0.19 33.77 -20.37 -0.69 -0.49 16 22 C 0.18 3.18 11.09 84.82 0.94 4.12 16 23 N -0.50 -14.20 10.33 -189.04 -1.95 -16.16 16 24 C 0.11 5.06 5.37 86.36 0.46 5.53 16 25 H 0.26 16.37 8.73 -92.70 -0.81 15.57 16 26 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.06 2.05 8.14 -2.39 -0.02 2.04 16 28 H 0.05 1.58 8.14 -2.39 -0.02 1.57 16 29 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.11 2.71 4.59 -2.39 -0.01 2.70 16 31 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 32 H 0.23 1.24 8.06 -2.91 -0.02 1.22 16 33 H 0.21 2.27 8.06 -2.91 -0.02 2.25 16 34 H 0.06 2.88 8.14 -2.39 -0.02 2.86 16 35 H 0.06 3.33 3.76 -2.39 -0.01 3.32 16 Total: -1.00 -75.75 309.09 2.11 -73.65 By element: Atomic # 1 Polarization: 0.81 SS G_CDS: 0.93 Total: 1.74 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: 5.60 Total: 8.06 kcal Atomic # 7 Polarization: -106.54 SS G_CDS: -5.49 Total: -112.03 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -0.06 Total: -27.21 kcal Atomic # 14 Polarization: 54.47 SS G_CDS: 1.81 Total: 56.29 kcal Atomic # 35 Polarization: 0.19 SS G_CDS: -0.69 Total: -0.49 kcal Total: -75.75 2.11 -73.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824746045.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.891 kcal (2) G-P(sol) polarization free energy of solvation -75.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds