Wall clock time and date at job start Tue Mar 31 2020 22:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00118 * 2 1 4 4 H 1.48500 * 109.47400 * 270.00116 * 3 2 1 5 5 H 1.48498 * 109.46775 * 30.00527 * 3 2 1 6 6 H 1.48507 * 109.46936 * 149.99958 * 3 2 1 7 7 C 1.37880 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99911 * 179.97438 * 7 2 1 9 9 C 1.50691 * 119.99810 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.52685 * 300.08415 * 9 7 2 11 11 C 1.53042 * 109.49941 * 179.97438 * 9 7 2 12 12 C 1.53037 * 109.54089 * 178.68096 * 11 9 7 13 13 C 1.53195 * 109.31128 * 61.36700 * 12 11 9 14 14 N 1.46928 * 108.77853 * 305.36576 * 13 12 11 15 15 C 1.34770 * 120.63184 * 233.63294 * 14 13 12 16 16 O 1.21475 * 119.99998 * 174.36707 * 15 14 13 17 17 C 1.48497 * 120.00014 * 354.36668 * 15 14 13 18 18 N 1.32471 * 119.16734 * 324.64646 * 17 15 14 19 19 C 1.32087 * 120.77701 * 179.71952 * 18 17 15 20 20 C 1.38925 * 119.14725 * 0.54342 * 19 18 17 21 21 Br 1.89102 * 120.75791 * 179.75721 * 20 19 18 22 22 C 1.38916 * 118.48441 * 359.72649 * 20 19 18 23 23 N 1.32083 * 119.15000 * 0.02562 * 22 20 19 24 24 C 1.46927 * 118.73658 * 53.60447 * 14 13 12 25 25 H 0.97001 * 120.00055 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.45678 * 58.66168 * 11 9 7 27 27 H 1.09007 * 109.44822 * 298.69742 * 11 9 7 28 28 H 1.09002 * 109.50326 * 301.41829 * 12 11 9 29 29 H 1.08998 * 109.50064 * 181.31694 * 12 11 9 30 30 H 1.08998 * 109.58812 * 65.15340 * 13 12 11 31 31 H 1.09003 * 109.58962 * 185.57608 * 13 12 11 32 32 H 1.07993 * 120.42734 * 180.25094 * 19 18 17 33 33 H 1.08002 * 120.42784 * 179.97438 * 22 20 19 34 34 H 1.08996 * 109.58498 * 186.60879 * 24 14 13 35 35 H 1.08995 * 109.58501 * 66.18276 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6232 -2.5573 0.8886 11 6 2.2449 -3.6628 -0.0018 12 6 1.4810 -4.9885 0.0314 13 6 0.6047 -5.0997 -1.2203 14 7 -0.2539 -3.9103 -1.3037 15 6 -1.5904 -4.0353 -1.4244 16 8 -2.2983 -3.0488 -1.3895 17 6 -2.1976 -5.3791 -1.5999 18 7 -1.5499 -6.2928 -2.3072 19 6 -2.0580 -7.4999 -2.4789 20 6 -3.2920 -7.8009 -1.9162 21 35 -4.0650 -9.5123 -2.1392 22 6 -3.9449 -6.8163 -1.1855 23 7 -3.3759 -5.6320 -1.0499 24 6 0.3721 -2.5821 -1.2526 25 1 -0.4850 0.8400 0.0004 26 1 2.8879 -3.5922 0.8756 27 1 2.8553 -3.6179 -0.9039 28 1 0.8513 -5.0235 0.9205 29 1 2.1896 -5.8163 0.0540 30 1 1.2378 -5.1561 -2.1058 31 1 -0.0151 -5.9939 -1.1542 32 1 -1.5233 -8.2418 -3.0533 33 1 -4.9058 -7.0162 -0.7348 34 1 -0.4011 -1.8152 -1.2077 35 1 0.9863 -2.4332 -2.1406 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824746048.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:03 Heat of formation + Delta-G solvation = 27.946968 kcal Electronic energy + Delta-G solvation = -21318.244490 eV Core-core repulsion = 17977.161866 eV Total energy + Delta-G solvation = -3341.082624 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.032 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.55070 -39.15537 -36.78173 -34.37467 -33.66925 -33.16383 -31.81097 -30.37366 -29.68246 -25.97739 -25.18990 -24.92144 -23.75243 -21.84376 -20.60794 -18.95321 -18.17583 -17.38161 -16.40377 -16.17956 -15.68665 -15.13643 -14.87359 -14.48784 -14.22972 -14.01469 -13.68465 -13.35934 -12.83478 -12.63415 -12.24959 -11.92172 -11.81360 -11.60026 -11.35925 -11.07553 -10.98490 -10.80739 -10.52076 -10.35825 -10.24610 -9.92526 -9.67969 -9.56379 -9.46473 -9.13785 -8.95676 -8.45573 -7.83860 -6.00297 -4.09519 0.04513 0.65647 0.94401 2.73430 3.01059 3.31593 3.38826 3.40958 3.43434 3.91032 3.98823 4.14125 4.34321 4.42901 4.74175 5.18273 5.29422 5.40424 5.53231 5.69874 5.73061 6.07181 6.18792 6.31007 6.40426 6.58221 6.64030 6.82106 6.94834 7.06246 7.16456 7.52711 7.61657 7.83581 7.94448 8.11451 8.35088 8.60618 8.94609 9.56351 11.05020 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.034891 B = 0.002699 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.309750 B =10372.172318 C =10929.811808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.062 3.938 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.040 3.960 10 H 0.030 0.970 11 C -0.111 4.111 12 C -0.137 4.137 13 C 0.110 3.890 14 N -0.579 5.579 15 C 0.571 3.429 16 O -0.498 6.498 17 C 0.317 3.683 18 N -0.478 5.478 19 C 0.176 3.824 20 C -0.203 4.203 21 Br -0.014 7.014 22 C 0.181 3.819 23 N -0.465 5.465 24 C 0.113 3.887 25 H 0.264 0.736 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.183 0.817 33 H 0.183 0.817 34 H 0.124 0.876 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.726 -22.589 -5.136 24.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.141 4.141 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.078 0.922 9 C 0.021 3.979 10 H 0.049 0.951 11 C -0.148 4.148 12 C -0.175 4.175 13 C -0.013 4.013 14 N -0.311 5.311 15 C 0.352 3.648 16 O -0.370 6.370 17 C 0.047 3.953 18 N -0.195 5.195 19 C 0.008 3.992 20 C -0.287 4.287 21 Br 0.070 6.930 22 C 0.013 3.987 23 N -0.179 5.179 24 C -0.007 4.007 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.200 0.800 33 H 0.200 0.800 34 H 0.142 0.858 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.129 -21.551 -5.073 23.260 hybrid contribution 0.192 0.175 -0.111 0.283 sum -6.936 -21.376 -5.184 23.063 Atomic orbital electron populations 1.69880 1.05734 1.26953 1.49129 1.25069 0.94893 0.99310 0.94787 0.86577 0.79784 0.83426 0.78121 1.20623 1.21202 1.19935 1.21058 0.92936 0.89975 1.51999 0.92241 1.18980 0.92623 0.92472 0.93834 0.95147 1.21635 0.98547 0.93909 1.00730 1.22012 0.98690 0.99262 0.97549 1.21880 0.93433 0.87631 0.98382 1.48377 1.04083 1.09974 1.68709 1.17260 0.83136 0.84778 0.79637 1.90857 1.60506 1.36499 1.49180 1.23711 0.87691 0.95048 0.88850 1.68812 1.33921 1.01348 1.15403 1.23467 0.90017 0.93677 0.92079 1.24008 1.00956 0.96180 1.07595 1.96794 1.82234 1.17369 1.96646 1.23496 0.98735 0.86232 0.90269 1.68519 1.09911 1.20052 1.19421 1.22482 0.98785 0.80248 0.99164 0.92552 0.92906 0.92984 0.92404 0.92066 0.91318 0.90369 0.80004 0.80012 0.85767 0.93150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.51 11.40 55.43 0.63 -24.88 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 3 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -13.95 8.56 -34.44 -0.29 -14.25 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.04 0.98 2.25 -91.65 -0.21 0.77 16 10 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 11 C -0.11 -2.18 5.10 -26.69 -0.14 -2.31 16 12 C -0.14 -2.25 6.08 -26.61 -0.16 -2.42 16 13 C 0.11 1.81 5.81 -3.71 -0.02 1.79 16 14 N -0.58 -11.95 2.97 -173.63 -0.52 -12.47 16 15 C 0.57 12.19 7.60 -12.03 -0.09 12.10 16 16 O -0.50 -12.65 16.45 5.39 0.09 -12.56 16 17 C 0.32 5.42 6.76 -157.07 -1.06 4.36 16 18 N -0.48 -6.67 7.46 -11.10 -0.08 -6.75 16 19 C 0.18 1.78 11.09 -17.19 -0.19 1.59 16 20 C -0.20 -1.94 6.28 -39.08 -0.25 -2.19 16 21 Br -0.01 -0.10 33.77 -68.01 -2.30 -2.40 16 22 C 0.18 2.04 11.09 -17.19 -0.19 1.85 16 23 N -0.46 -7.44 10.29 -11.10 -0.11 -7.55 16 24 C 0.11 2.71 5.41 -3.71 -0.02 2.69 16 25 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.08 1.17 4.95 -51.93 -0.26 0.91 16 32 H 0.18 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.18 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.12 3.48 5.12 -51.93 -0.27 3.22 16 35 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 313.77 15.07 4.73 4.73 Total: -1.00 -31.48 313.77 -9.17 -40.65 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -3.87 Total: -0.46 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: -2.72 Total: 5.60 kcal Atomic # 7 Polarization: -51.57 SS G_CDS: -0.08 Total: -51.65 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.09 Total: -12.56 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 35 Polarization: -0.10 SS G_CDS: -2.30 Total: -2.40 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.48 -9.17 -40.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824746048.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.595 kcal (2) G-P(sol) polarization free energy of solvation -31.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds