Wall clock time and date at job start Tue Mar 31 2020 22:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00118 * 2 1 4 4 H 1.48500 * 109.47400 * 270.00116 * 3 2 1 5 5 H 1.48498 * 109.46775 * 30.00527 * 3 2 1 6 6 H 1.48507 * 109.46936 * 149.99958 * 3 2 1 7 7 C 1.37880 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99911 * 179.97438 * 7 2 1 9 9 C 1.50691 * 119.99810 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.52685 * 300.08415 * 9 7 2 11 11 C 1.53042 * 109.49941 * 179.97438 * 9 7 2 12 12 C 1.53037 * 109.54089 * 178.68096 * 11 9 7 13 13 C 1.53195 * 109.31128 * 61.36700 * 12 11 9 14 14 N 1.46928 * 108.77853 * 305.36576 * 13 12 11 15 15 C 1.34770 * 120.63184 * 233.63294 * 14 13 12 16 16 O 1.21475 * 119.99998 * 174.36707 * 15 14 13 17 17 C 1.48497 * 120.00014 * 354.36668 * 15 14 13 18 18 N 1.32471 * 119.16734 * 324.64646 * 17 15 14 19 19 C 1.32087 * 120.77701 * 179.71952 * 18 17 15 20 20 C 1.38925 * 119.14725 * 0.54342 * 19 18 17 21 21 Br 1.89102 * 120.75791 * 179.75721 * 20 19 18 22 22 C 1.38916 * 118.48441 * 359.72649 * 20 19 18 23 23 N 1.32083 * 119.15000 * 0.02562 * 22 20 19 24 24 C 1.46927 * 118.73658 * 53.60447 * 14 13 12 25 25 H 0.97001 * 120.00055 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.45678 * 58.66168 * 11 9 7 27 27 H 1.09007 * 109.44822 * 298.69742 * 11 9 7 28 28 H 1.09002 * 109.50326 * 301.41829 * 12 11 9 29 29 H 1.08998 * 109.50064 * 181.31694 * 12 11 9 30 30 H 1.08998 * 109.58812 * 65.15340 * 13 12 11 31 31 H 1.09003 * 109.58962 * 185.57608 * 13 12 11 32 32 H 1.07993 * 120.42734 * 180.25094 * 19 18 17 33 33 H 1.08002 * 120.42784 * 179.97438 * 22 20 19 34 34 H 1.08996 * 109.58498 * 186.60879 * 24 14 13 35 35 H 1.08995 * 109.58501 * 66.18276 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6232 -2.5573 0.8886 11 6 2.2449 -3.6628 -0.0018 12 6 1.4810 -4.9885 0.0314 13 6 0.6047 -5.0997 -1.2203 14 7 -0.2539 -3.9103 -1.3037 15 6 -1.5904 -4.0353 -1.4244 16 8 -2.2983 -3.0488 -1.3895 17 6 -2.1976 -5.3791 -1.5999 18 7 -1.5499 -6.2928 -2.3072 19 6 -2.0580 -7.4999 -2.4789 20 6 -3.2920 -7.8009 -1.9162 21 35 -4.0650 -9.5123 -2.1392 22 6 -3.9449 -6.8163 -1.1855 23 7 -3.3759 -5.6320 -1.0499 24 6 0.3721 -2.5821 -1.2526 25 1 -0.4850 0.8400 0.0004 26 1 2.8879 -3.5922 0.8756 27 1 2.8553 -3.6179 -0.9039 28 1 0.8513 -5.0235 0.9205 29 1 2.1896 -5.8163 0.0540 30 1 1.2378 -5.1561 -2.1058 31 1 -0.0151 -5.9939 -1.1542 32 1 -1.5233 -8.2418 -3.0533 33 1 -4.9058 -7.0162 -0.7348 34 1 -0.4011 -1.8152 -1.2077 35 1 0.9863 -2.4332 -2.1406 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824746048.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:02 Heat of formation + Delta-G solvation = 7.476712 kcal Electronic energy + Delta-G solvation = -21319.132147 eV Core-core repulsion = 17977.161866 eV Total energy + Delta-G solvation = -3341.970281 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.032 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.64254 -40.71459 -38.46586 -35.64487 -35.04359 -34.44505 -33.46207 -31.70369 -31.03194 -27.52874 -26.83450 -25.98483 -25.12897 -23.49518 -22.09395 -20.52985 -19.30098 -18.82271 -18.18591 -17.56254 -16.85396 -16.72875 -16.28938 -15.94749 -15.67363 -15.20028 -14.96978 -14.88591 -14.55852 -14.35158 -13.92848 -13.55234 -12.92170 -12.85323 -12.63298 -12.56128 -12.38628 -12.28441 -12.18378 -11.80440 -11.74425 -11.62803 -11.30302 -10.99144 -10.83024 -10.54640 -10.53244 -10.37406 -9.54223 -8.10145 -6.27743 -0.99687 -0.22932 0.15786 1.34582 1.42756 1.42904 1.53975 1.62985 2.31985 2.42923 2.73711 2.96085 3.18195 3.20484 3.49447 3.58504 4.04772 4.14444 4.30867 4.40492 4.60039 4.68020 4.76384 4.82055 4.87519 5.06690 5.21873 5.23410 5.30906 5.46128 5.48214 5.59726 5.86676 5.96083 6.29392 6.35914 6.57822 6.84571 6.99771 7.42751 8.93488 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.034891 B = 0.002699 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.309750 B =10372.172318 C =10929.811808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.009 3.991 3 Si 0.960 3.040 4 H -0.274 1.274 5 H -0.289 1.289 6 H -0.262 1.262 7 C -0.534 4.534 8 H 0.066 0.934 9 C 0.038 3.962 10 H -0.014 1.014 11 C -0.104 4.104 12 C -0.129 4.129 13 C 0.109 3.891 14 N -0.582 5.582 15 C 0.563 3.437 16 O -0.559 6.559 17 C 0.297 3.703 18 N -0.482 5.482 19 C 0.180 3.820 20 C -0.184 4.184 21 Br 0.023 6.977 22 C 0.177 3.823 23 N -0.500 5.500 24 C 0.125 3.875 25 H 0.260 0.740 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.043 0.957 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.226 0.774 33 H 0.213 0.787 34 H 0.079 0.921 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.699 -26.124 -6.009 27.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.191 4.191 3 Si 0.785 3.215 4 H -0.199 1.199 5 H -0.215 1.215 6 H -0.186 1.186 7 C -0.572 4.572 8 H 0.084 0.916 9 C 0.019 3.981 10 H 0.004 0.996 11 C -0.142 4.142 12 C -0.167 4.167 13 C -0.013 4.013 14 N -0.313 5.313 15 C 0.346 3.654 16 O -0.436 6.436 17 C 0.028 3.972 18 N -0.199 5.199 19 C 0.013 3.987 20 C -0.268 4.268 21 Br 0.107 6.893 22 C 0.010 3.990 23 N -0.216 5.216 24 C 0.003 3.997 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.125 0.875 30 H 0.107 0.893 31 H 0.118 0.882 32 H 0.242 0.758 33 H 0.229 0.771 34 H 0.097 0.903 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.072 -25.161 -5.948 26.558 hybrid contribution -0.232 1.049 0.135 1.083 sum -6.304 -24.112 -5.813 25.591 Atomic orbital electron populations 1.70092 1.07494 1.27344 1.50534 1.25926 0.95542 1.03037 0.94556 0.85531 0.78701 0.78965 0.78318 1.19937 1.21516 1.18620 1.21493 0.93396 0.91189 1.51152 0.91605 1.18916 0.93070 0.94139 0.91970 0.99633 1.21522 0.97621 0.93637 1.01395 1.21982 0.98973 0.98809 0.96933 1.22182 0.93361 0.86524 0.99218 1.48375 1.04710 1.09993 1.68226 1.17891 0.82963 0.86298 0.78233 1.90800 1.61837 1.39225 1.51719 1.22575 0.88809 0.93895 0.91967 1.68700 1.34111 1.02215 1.14915 1.24177 0.90306 0.92704 0.91499 1.24184 1.00357 0.97156 1.05142 1.96866 1.81709 1.14423 1.96328 1.24007 0.99591 0.85073 0.90351 1.68376 1.09922 1.22680 1.20608 1.21924 0.97360 0.81500 0.98867 0.93090 0.92642 0.91796 0.93789 0.87464 0.89306 0.88226 0.75778 0.77080 0.90283 0.93146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.29 11.40 21.45 0.24 -56.05 16 2 C 0.01 0.50 5.30 84.66 0.45 0.95 16 3 Si 0.96 44.38 29.54 68.60 2.03 46.41 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 6 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.53 -29.37 8.56 25.60 0.22 -29.15 16 8 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.04 1.95 2.25 -11.46 -0.03 1.93 16 10 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 11 C -0.10 -4.03 5.10 30.62 0.16 -3.87 16 12 C -0.13 -4.00 6.08 30.67 0.19 -3.81 16 13 C 0.11 3.40 5.81 86.36 0.50 3.90 16 14 N -0.58 -24.82 2.97 -821.57 -2.44 -27.26 16 15 C 0.56 25.33 7.60 86.98 0.66 25.99 16 16 O -0.56 -30.81 16.45 -3.64 -0.06 -30.87 16 17 C 0.30 10.25 6.76 137.67 0.93 11.18 16 18 N -0.48 -12.54 7.46 -189.04 -1.41 -13.95 16 19 C 0.18 3.00 11.09 84.82 0.94 3.94 16 20 C -0.18 -2.92 6.28 22.60 0.14 -2.77 16 21 Br 0.02 0.24 33.77 -20.37 -0.69 -0.45 16 22 C 0.18 3.64 11.09 84.82 0.94 4.58 16 23 N -0.50 -16.07 10.29 -189.04 -1.94 -18.02 16 24 C 0.12 6.34 5.41 86.36 0.47 6.81 16 25 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 26 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 27 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 28 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.11 2.41 8.14 -2.39 -0.02 2.40 16 30 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.10 2.74 4.95 -2.39 -0.01 2.73 16 32 H 0.23 1.73 8.06 -2.91 -0.02 1.71 16 33 H 0.21 2.83 8.06 -2.91 -0.02 2.80 16 34 H 0.08 4.80 5.12 -2.39 -0.01 4.78 16 35 H 0.05 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -75.65 313.77 2.42 -73.24 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: 1.12 Total: 7.27 kcal Atomic # 6 Polarization: 14.10 SS G_CDS: 5.57 Total: 19.67 kcal Atomic # 7 Polarization: -109.72 SS G_CDS: -5.55 Total: -115.27 kcal Atomic # 8 Polarization: -30.81 SS G_CDS: -0.06 Total: -30.87 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 35 Polarization: 0.24 SS G_CDS: -0.69 Total: -0.45 kcal Total: -75.65 2.42 -73.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824746048.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.715 kcal (2) G-P(sol) polarization free energy of solvation -75.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds