Wall clock time and date at job start Tue Mar 31 2020 21:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 115.56536 * 2 1 4 4 N 1.46503 * 109.46822 * 279.85357 * 3 2 1 5 5 S 1.65598 * 119.99714 * 165.27800 * 4 3 2 6 6 O 1.42102 * 104.27762 * 181.06683 * 5 4 3 7 7 O 1.42102 * 104.27818 * 308.92492 * 5 4 3 8 8 C 1.81400 * 104.44879 * 64.99721 * 5 4 3 9 9 C 1.53001 * 109.47020 * 179.97438 * 8 5 4 10 10 C 1.52997 * 109.47334 * 180.02562 * 9 8 5 11 11 C 1.50701 * 109.47614 * 180.02562 * 10 9 8 12 12 H 1.07994 * 119.99613 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99974 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00257 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 119.99625 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47155 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47158 * 119.99810 * 15 13 11 18 18 H 1.48503 * 109.46954 * 239.99534 * 15 13 11 19 19 C 1.53076 * 117.49276 * 145.70835 * 2 1 3 20 20 C 1.53001 * 117.49794 * 214.31231 * 2 1 3 21 21 H 1.08991 * 117.50038 * 0.02562 * 20 2 1 22 22 Br 1.96606 * 117.50110 * 145.02380 * 20 2 1 23 23 H 1.08998 * 109.47417 * 200.27794 * 1 2 3 24 24 H 1.09000 * 109.47702 * 320.28000 * 1 2 3 25 25 H 1.09006 * 109.47311 * 80.27790 * 1 2 3 26 26 H 1.09000 * 109.46882 * 39.84578 * 3 2 1 27 27 H 1.08997 * 109.47123 * 159.85043 * 3 2 1 28 28 H 0.97001 * 120.00065 * 345.27613 * 4 3 2 29 29 H 1.08997 * 109.47229 * 299.99584 * 8 5 4 30 30 H 1.09000 * 109.47006 * 60.00484 * 8 5 4 31 31 H 1.09001 * 109.47332 * 300.00309 * 9 8 5 32 32 H 1.09001 * 109.47370 * 60.00331 * 9 8 5 33 33 H 1.09001 * 109.47129 * 300.00391 * 10 9 8 34 34 H 1.09003 * 109.47376 * 60.00026 * 10 9 8 35 35 H 0.97002 * 119.99712 * 180.02562 * 14 13 11 36 36 H 1.08996 * 117.49744 * 0.02562 * 19 2 1 37 37 H 1.09003 * 117.52912 * 214.95170 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 7 2.1877 1.9227 -1.3609 5 16 2.4980 3.5298 -1.6121 6 8 2.3870 3.6924 -3.0194 7 8 1.6133 4.2005 -0.7251 8 6 4.2186 3.7471 -1.0801 9 6 4.6292 5.2092 -1.2661 10 6 6.0805 5.3924 -0.8180 11 6 6.4848 6.8327 -1.0006 12 1 5.7774 7.5459 -1.3971 13 6 7.7581 7.2395 -0.6626 14 7 8.6196 6.3708 -0.1803 15 14 8.2593 9.0246 -0.8897 16 1 7.1163 9.7929 -1.4451 17 1 8.6518 9.5993 0.4222 18 1 9.4085 9.1007 -1.8271 19 6 2.2366 -1.1219 0.7650 20 6 2.2364 -1.1210 -0.7650 21 1 1.6112 -1.8582 -1.2687 22 35 3.9230 -0.6777 -1.6728 23 1 -0.3634 -0.9639 0.3561 24 1 -0.3634 0.7904 0.6567 25 1 -0.3634 0.1735 -1.0129 26 1 1.6352 2.0484 0.6585 27 1 3.2173 1.2917 0.3540 28 1 2.0042 1.3405 -2.1148 29 1 4.3111 3.4744 -0.0289 30 1 4.8676 3.1088 -1.6796 31 1 4.5368 5.4816 -2.3175 32 1 3.9802 5.8479 -0.6669 33 1 6.1734 5.1198 0.2333 34 1 6.7293 4.7538 -1.4175 35 1 9.5153 6.6572 0.0579 36 1 1.6113 -1.8597 1.2677 37 1 3.1720 -0.8769 1.2683 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856757691.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:36 Heat of formation + Delta-G solvation = -65.500277 kcal Electronic energy + Delta-G solvation = -19637.727442 eV Core-core repulsion = 16395.743842 eV Total energy + Delta-G solvation = -3241.983601 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 339.029 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.11849 -36.84075 -35.71778 -34.64386 -34.29002 -32.16782 -30.73888 -28.62712 -27.78192 -26.32086 -23.70512 -22.51061 -20.64859 -19.82043 -19.11219 -17.39922 -16.67225 -16.41415 -15.87186 -15.67460 -15.13098 -14.75947 -14.47015 -14.06414 -13.75376 -13.29096 -12.69854 -12.56110 -12.43096 -12.25029 -11.99547 -11.91501 -11.80357 -11.74518 -11.66390 -11.47492 -11.21389 -10.92600 -10.82027 -10.75186 -10.41353 -10.03130 -9.93810 -9.84423 -9.57297 -9.28135 -9.04517 -8.39883 -6.04556 -4.07411 0.50674 1.31814 2.72039 3.13697 3.30207 3.37704 3.42765 3.96847 3.98427 4.14119 4.19485 4.43573 4.47519 4.48619 4.98190 5.09062 5.21757 5.22691 5.28217 5.32153 5.35053 5.39017 5.47480 5.55288 5.75696 5.80204 5.93343 6.29454 6.47917 6.89069 6.94461 7.59033 7.68911 7.93795 8.34430 8.99147 9.57300 11.06690 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.017917 B = 0.003243 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.356289 B = 8631.982744 C = 9425.952706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.111 4.111 3 C 0.148 3.852 4 N -1.118 6.118 5 S 2.600 3.400 6 O -0.962 6.962 7 O -0.964 6.964 8 C -0.608 4.608 9 C -0.105 4.105 10 C 0.030 3.970 11 C -0.525 4.525 12 H 0.059 0.941 13 C 0.057 3.943 14 N -0.895 5.895 15 Si 0.894 3.106 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.284 1.284 19 C -0.141 4.141 20 C -0.125 4.125 21 H 0.138 0.862 22 Br -0.106 7.106 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.092 0.908 27 H 0.072 0.928 28 H 0.415 0.585 29 H 0.126 0.874 30 H 0.129 0.871 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.020 0.980 34 H 0.020 0.980 35 H 0.261 0.739 36 H 0.112 0.888 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.038 -20.971 1.283 25.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.114 4.114 3 C 0.021 3.979 4 N -0.876 5.876 5 S 2.696 3.304 6 O -0.953 6.953 7 O -0.953 6.953 8 C -0.740 4.740 9 C -0.145 4.145 10 C -0.008 4.008 11 C -0.563 4.563 12 H 0.077 0.923 13 C -0.144 4.144 14 N -0.534 5.534 15 Si 0.721 3.279 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.210 1.210 19 C -0.180 4.180 20 C -0.222 4.222 21 H 0.156 0.844 22 Br -0.024 7.024 23 H 0.080 0.920 24 H 0.092 0.908 25 H 0.085 0.915 26 H 0.110 0.890 27 H 0.090 0.910 28 H 0.249 0.751 29 H 0.145 0.855 30 H 0.147 0.853 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.070 0.930 36 H 0.130 0.870 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -14.894 -20.099 0.830 25.030 hybrid contribution 0.694 0.105 -0.001 0.702 sum -14.200 -19.995 0.829 24.538 Atomic orbital electron populations 1.21400 0.90334 1.02624 1.03071 1.21975 0.95980 0.90548 1.02855 1.20889 1.00520 0.92705 0.83756 1.55650 1.88626 1.29910 1.13436 1.05278 0.78173 0.72492 0.74424 1.93578 1.87046 1.84282 1.30379 1.93561 1.61643 1.72684 1.67459 1.30528 1.22458 1.08679 1.12293 1.21494 1.03050 0.88005 1.01942 1.19064 0.87742 0.97146 0.96838 1.21298 0.97662 0.94584 1.42787 0.92319 1.25021 0.96587 0.97686 0.95103 1.69970 1.05644 1.34045 1.43773 0.86508 0.78593 0.84954 0.77811 1.19588 1.20946 1.20965 1.23542 1.03192 1.00089 0.91188 1.25737 0.94788 1.05224 0.96407 0.84418 1.97451 1.30873 1.94546 1.79574 0.91983 0.90802 0.91493 0.88995 0.90972 0.75057 0.85534 0.85295 0.91631 0.91603 0.96118 0.96141 0.92980 0.87019 0.86987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.70 9.81 37.15 0.36 -0.33 16 2 C -0.11 -0.76 2.17 -154.47 -0.34 -1.10 16 3 C 0.15 1.34 5.25 -4.04 -0.02 1.31 16 4 N -1.12 -12.18 5.14 -10.61 -0.05 -12.23 16 5 S 2.60 38.59 5.46 -107.50 -0.59 38.00 16 6 O -0.96 -17.24 18.08 -57.54 -1.04 -18.28 16 7 O -0.96 -16.73 17.50 -57.54 -1.01 -17.74 16 8 C -0.61 -9.52 6.07 37.16 0.23 -9.29 16 9 C -0.11 -2.17 5.16 -26.73 -0.14 -2.30 16 10 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 11 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 12 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.90 -26.72 13.29 55.43 0.74 -25.99 16 15 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 16 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 C -0.14 -0.79 9.65 -26.69 -0.26 -1.05 16 20 C -0.13 -0.84 6.50 -26.73 -0.17 -1.02 16 21 H 0.14 0.75 8.14 -51.93 -0.42 0.32 16 22 Br -0.11 -1.02 31.55 -68.01 -2.15 -3.16 16 23 H 0.06 0.27 7.95 -51.93 -0.41 -0.14 16 24 H 0.07 0.46 8.07 -51.93 -0.42 0.04 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.09 0.83 7.63 -51.93 -0.40 0.43 16 27 H 0.07 0.61 7.68 -51.93 -0.40 0.21 16 28 H 0.42 4.12 7.70 -34.47 -0.27 3.86 16 29 H 0.13 1.73 8.14 -51.93 -0.42 1.31 16 30 H 0.13 1.87 8.14 -51.92 -0.42 1.45 16 31 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.11 0.43 8.08 -51.93 -0.42 0.01 16 37 H 0.11 0.65 8.09 -51.93 -0.42 0.23 16 LS Contribution 342.41 15.07 5.16 5.16 Total: -1.00 -34.76 342.41 -10.50 -45.26 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -5.65 Total: -0.91 kcal Atomic # 6 Polarization: -25.91 SS G_CDS: -0.89 Total: -26.80 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.68 Total: -38.22 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -2.05 Total: -36.02 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 38.59 SS G_CDS: -0.59 Total: 38.00 kcal Atomic # 35 Polarization: -1.02 SS G_CDS: -2.15 Total: -3.16 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.76 -10.50 -45.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856757691.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.244 kcal (2) G-P(sol) polarization free energy of solvation -34.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds