Wall clock time and date at job start Tue Mar 31 2020 21:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 115.56536 * 2 1 4 4 N 1.46503 * 109.46822 * 279.85357 * 3 2 1 5 5 S 1.65598 * 119.99714 * 165.27800 * 4 3 2 6 6 O 1.42102 * 104.27762 * 181.06683 * 5 4 3 7 7 O 1.42102 * 104.27818 * 308.92492 * 5 4 3 8 8 C 1.81400 * 104.44879 * 64.99721 * 5 4 3 9 9 C 1.53001 * 109.47020 * 179.97438 * 8 5 4 10 10 C 1.52997 * 109.47334 * 180.02562 * 9 8 5 11 11 C 1.50701 * 109.47614 * 180.02562 * 10 9 8 12 12 H 1.07994 * 119.99613 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99974 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00257 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 119.99625 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47155 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47158 * 119.99810 * 15 13 11 18 18 H 1.48503 * 109.46954 * 239.99534 * 15 13 11 19 19 C 1.53076 * 117.49276 * 145.70835 * 2 1 3 20 20 C 1.53001 * 117.49794 * 214.31231 * 2 1 3 21 21 H 1.08991 * 117.50038 * 0.02562 * 20 2 1 22 22 Br 1.96606 * 117.50110 * 145.02380 * 20 2 1 23 23 H 1.08998 * 109.47417 * 200.27794 * 1 2 3 24 24 H 1.09000 * 109.47702 * 320.28000 * 1 2 3 25 25 H 1.09006 * 109.47311 * 80.27790 * 1 2 3 26 26 H 1.09000 * 109.46882 * 39.84578 * 3 2 1 27 27 H 1.08997 * 109.47123 * 159.85043 * 3 2 1 28 28 H 0.97001 * 120.00065 * 345.27613 * 4 3 2 29 29 H 1.08997 * 109.47229 * 299.99584 * 8 5 4 30 30 H 1.09000 * 109.47006 * 60.00484 * 8 5 4 31 31 H 1.09001 * 109.47332 * 300.00309 * 9 8 5 32 32 H 1.09001 * 109.47370 * 60.00331 * 9 8 5 33 33 H 1.09001 * 109.47129 * 300.00391 * 10 9 8 34 34 H 1.09003 * 109.47376 * 60.00026 * 10 9 8 35 35 H 0.97002 * 119.99712 * 180.02562 * 14 13 11 36 36 H 1.08996 * 117.49744 * 0.02562 * 19 2 1 37 37 H 1.09003 * 117.52912 * 214.95170 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 7 2.1877 1.9227 -1.3609 5 16 2.4980 3.5298 -1.6121 6 8 2.3870 3.6924 -3.0194 7 8 1.6133 4.2005 -0.7251 8 6 4.2186 3.7471 -1.0801 9 6 4.6292 5.2092 -1.2661 10 6 6.0805 5.3924 -0.8180 11 6 6.4848 6.8327 -1.0006 12 1 5.7774 7.5459 -1.3971 13 6 7.7581 7.2395 -0.6626 14 7 8.6196 6.3708 -0.1803 15 14 8.2593 9.0246 -0.8897 16 1 7.1163 9.7929 -1.4451 17 1 8.6518 9.5993 0.4222 18 1 9.4085 9.1007 -1.8271 19 6 2.2366 -1.1219 0.7650 20 6 2.2364 -1.1210 -0.7650 21 1 1.6112 -1.8582 -1.2687 22 35 3.9230 -0.6777 -1.6728 23 1 -0.3634 -0.9639 0.3561 24 1 -0.3634 0.7904 0.6567 25 1 -0.3634 0.1735 -1.0129 26 1 1.6352 2.0484 0.6585 27 1 3.2173 1.2917 0.3540 28 1 2.0042 1.3405 -2.1148 29 1 4.3111 3.4744 -0.0289 30 1 4.8676 3.1088 -1.6796 31 1 4.5368 5.4816 -2.3175 32 1 3.9802 5.8479 -0.6669 33 1 6.1734 5.1198 0.2333 34 1 6.7293 4.7538 -1.4175 35 1 9.5153 6.6572 0.0579 36 1 1.6113 -1.8597 1.2677 37 1 3.1720 -0.8769 1.2683 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000856757691.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:35 Heat of formation + Delta-G solvation = -89.488978 kcal Electronic energy + Delta-G solvation = -19638.767670 eV Core-core repulsion = 16395.743842 eV Total energy + Delta-G solvation = -3243.023829 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 339.029 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.69231 -38.16916 -37.05514 -36.47207 -35.14603 -34.16847 -31.32885 -29.66188 -29.11618 -27.06733 -25.62715 -23.00836 -22.40391 -20.51807 -20.24403 -18.68984 -18.42759 -17.48812 -17.16534 -16.55299 -16.50034 -16.11596 -15.76343 -15.22944 -14.53407 -14.40444 -14.05334 -13.86027 -13.53425 -13.37386 -13.22448 -13.15892 -13.09923 -12.96812 -12.78031 -12.61090 -12.50699 -12.33854 -12.16240 -12.09317 -11.76245 -11.38888 -11.37116 -11.14153 -10.62529 -10.58623 -10.47009 -10.20877 -8.23218 -6.34268 -0.73199 0.75990 1.39284 1.39895 1.53359 1.74629 2.39358 2.51191 2.75246 3.10344 3.21740 3.45676 3.60025 3.68232 3.77164 3.93453 3.95608 4.38674 4.39168 4.55886 4.65183 4.77057 4.81476 4.87979 4.95525 5.00032 5.02540 5.05987 5.09323 5.36410 5.44923 5.62072 5.78885 6.07209 6.19149 6.81500 7.35170 8.88492 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.017917 B = 0.003243 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.356289 B = 8631.982744 C = 9425.952706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.115 4.115 3 C 0.135 3.865 4 N -1.103 6.103 5 S 2.631 3.369 6 O -0.993 6.993 7 O -0.986 6.986 8 C -0.609 4.609 9 C -0.106 4.106 10 C 0.031 3.969 11 C -0.551 4.551 12 H 0.060 0.940 13 C 0.003 3.997 14 N -0.930 5.930 15 Si 0.963 3.037 16 H -0.263 1.263 17 H -0.276 1.276 18 H -0.277 1.277 19 C -0.126 4.126 20 C -0.124 4.124 21 H 0.155 0.845 22 Br -0.140 7.140 23 H 0.082 0.918 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.093 0.907 27 H 0.079 0.921 28 H 0.422 0.578 29 H 0.146 0.854 30 H 0.140 0.860 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.004 0.996 34 H 0.000 1.000 35 H 0.265 0.735 36 H 0.137 0.863 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.107 -21.733 1.787 27.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.118 4.118 3 C 0.009 3.991 4 N -0.865 5.865 5 S 2.725 3.275 6 O -0.983 6.983 7 O -0.976 6.976 8 C -0.740 4.740 9 C -0.145 4.145 10 C -0.007 4.007 11 C -0.589 4.589 12 H 0.078 0.922 13 C -0.196 4.196 14 N -0.570 5.570 15 Si 0.788 3.212 16 H -0.187 1.187 17 H -0.201 1.201 18 H -0.203 1.203 19 C -0.165 4.165 20 C -0.220 4.220 21 H 0.173 0.827 22 Br -0.058 7.058 23 H 0.101 0.899 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.111 0.889 27 H 0.097 0.903 28 H 0.258 0.742 29 H 0.164 0.836 30 H 0.158 0.842 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.023 0.977 34 H 0.019 0.981 35 H 0.074 0.926 36 H 0.155 0.845 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -15.966 -20.860 1.331 26.303 hybrid contribution 0.988 0.250 -0.104 1.024 sum -14.979 -20.610 1.228 25.508 Atomic orbital electron populations 1.21423 0.89448 1.03679 1.02825 1.21933 0.96508 0.89434 1.03928 1.21163 1.01414 0.94154 0.82331 1.55271 1.87928 1.28438 1.14817 1.04167 0.77096 0.73116 0.73077 1.93532 1.87204 1.85341 1.32230 1.93530 1.62055 1.74102 1.67927 1.30498 1.23825 1.05606 1.14075 1.21307 0.99981 0.91495 1.01691 1.18958 0.90629 0.95593 0.95511 1.21767 0.98195 0.96072 1.42913 0.92156 1.25939 0.96599 1.02389 0.94632 1.70082 1.06117 1.36247 1.44545 0.85423 0.78380 0.79346 0.78070 1.18747 1.20109 1.20297 1.23680 1.03116 0.99366 0.90333 1.25888 0.93336 1.05511 0.97226 0.82700 1.97453 1.33293 1.94729 1.80372 0.89944 0.91226 0.91984 0.88894 0.90322 0.74154 0.83581 0.84226 0.91786 0.91335 0.97735 0.98149 0.92647 0.84542 0.87206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.09 9.81 71.98 0.71 -0.39 16 2 C -0.12 -1.31 2.17 -52.16 -0.11 -1.42 16 3 C 0.14 2.22 5.25 86.38 0.45 2.67 16 4 N -1.10 -22.70 5.14 -187.48 -0.96 -23.66 16 5 S 2.63 76.39 5.46 -56.49 -0.31 76.08 16 6 O -0.99 -35.20 18.08 -127.65 -2.31 -37.50 16 7 O -0.99 -33.53 17.50 -127.65 -2.23 -35.77 16 8 C -0.61 -18.86 6.07 71.98 0.44 -18.42 16 9 C -0.11 -4.38 5.16 30.59 0.16 -4.22 16 10 C 0.03 1.64 4.97 29.85 0.15 1.79 16 11 C -0.55 -31.72 9.11 25.60 0.23 -31.48 16 12 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 13 C 0.00 0.15 5.46 84.65 0.46 0.61 16 14 N -0.93 -56.19 13.29 21.45 0.28 -55.90 16 15 Si 0.96 44.54 29.54 68.60 2.03 46.56 16 16 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 17 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 19 C -0.13 -1.04 9.65 30.62 0.30 -0.74 16 20 C -0.12 -1.37 6.50 30.60 0.20 -1.17 16 21 H 0.16 1.21 8.14 -2.39 -0.02 1.19 16 22 Br -0.14 -2.53 31.55 -20.37 -0.64 -3.17 16 23 H 0.08 0.44 7.95 -2.39 -0.02 0.42 16 24 H 0.07 0.73 8.07 -2.39 -0.02 0.71 16 25 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 26 H 0.09 1.54 7.63 -2.39 -0.02 1.52 16 27 H 0.08 1.20 7.68 -2.39 -0.02 1.18 16 28 H 0.42 7.85 7.70 -96.74 -0.75 7.10 16 29 H 0.15 3.89 8.14 -2.39 -0.02 3.87 16 30 H 0.14 4.01 8.14 -2.39 -0.02 3.99 16 31 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.07 2.75 8.14 -2.39 -0.02 2.74 16 33 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 34 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 35 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 36 H 0.14 0.50 8.08 -2.39 -0.02 0.48 16 37 H 0.11 1.01 8.09 -2.39 -0.02 0.99 16 Total: -1.00 -74.56 342.41 -0.85 -75.41 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.31 Total: 10.73 kcal Atomic # 6 Polarization: -55.76 SS G_CDS: 2.98 Total: -52.78 kcal Atomic # 7 Polarization: -78.89 SS G_CDS: -0.68 Total: -79.57 kcal Atomic # 8 Polarization: -68.73 SS G_CDS: -4.54 Total: -73.27 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 16 Polarization: 76.39 SS G_CDS: -0.31 Total: 76.08 kcal Atomic # 35 Polarization: -2.53 SS G_CDS: -0.64 Total: -3.17 kcal Total: -74.56 -0.85 -75.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856757691.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.076 kcal (2) G-P(sol) polarization free energy of solvation -74.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds