Wall clock time and date at job start Tue Mar 31 2020 22:27:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17402 * 1
3 3 C 1.47198 * 179.97438 * 2 1
4 4 N 1.46506 * 109.46767 * 150.27843 * 3 2 1
5 5 C 1.36985 * 119.99920 * 274.35850 * 4 3 2
6 6 H 1.07998 * 120.00089 * 38.58845 * 5 4 3
7 7 C 1.38972 * 119.99853 * 218.57530 * 5 4 3
8 8 N 1.31416 * 120.00296 * 7.80262 * 7 5 4
9 9 Si 1.86799 * 119.99834 * 187.79477 * 7 5 4
10 10 H 1.48500 * 109.47176 * 90.00610 * 9 7 5
11 11 H 1.48504 * 109.47141 * 210.00455 * 9 7 5
12 12 H 1.48500 * 109.47310 * 330.00462 * 9 7 5
13 13 C 1.34778 * 119.99837 * 94.36011 * 4 3 2
14 14 O 1.21639 * 120.00112 * 186.70268 * 13 4 3
15 15 C 1.47266 * 120.00041 * 6.70580 * 13 4 3
16 16 C 1.41355 * 126.43473 * 328.94089 * 15 13 4
17 17 N 1.30418 * 108.04406 * 180.02562 * 16 15 13
18 18 N 1.39930 * 108.96460 * 0.02562 * 17 16 15
19 19 C 1.46496 * 125.74634 * 180.02562 * 18 17 16
20 20 C 1.52999 * 109.47334 * 60.02589 * 19 18 17
21 21 C 1.52998 * 109.47363 * 300.02148 * 19 18 17
22 22 C 1.34360 * 108.50142 * 0.26101 * 18 17 16
23 23 Br 1.89096 * 126.31866 * 179.69602 * 22 18 17
24 24 H 4.40645 * 5.51341 * 179.97438 * 4 1 2
25 25 H 1.08998 * 109.47258 * 30.28431 * 3 2 1
26 26 H 1.08994 * 109.47029 * 270.27359 * 3 2 1
27 27 H 0.96998 * 120.00125 * 184.76565 * 8 7 5
28 28 H 1.07999 * 125.97520 * 0.04974 * 16 15 13
29 29 H 1.09006 * 109.46671 * 180.02562 * 19 18 17
30 30 H 1.09000 * 109.46978 * 59.99733 * 20 19 18
31 31 H 1.08997 * 109.47087 * 299.99389 * 20 19 18
32 32 H 1.09000 * 109.47026 * 179.97438 * 20 19 18
33 33 H 1.09000 * 109.47329 * 180.02562 * 21 19 18
34 34 H 1.08998 * 109.46972 * 300.00272 * 21 19 18
35 35 H 1.09005 * 109.46942 * 59.99940 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1337 1.2005 -0.6848
5 6 3.2770 1.2010 -2.0472
6 1 2.5481 0.7001 -2.6670
7 6 4.3602 1.8462 -2.6317
8 7 5.3259 2.3227 -1.8785
9 14 4.4435 2.0361 -4.4881
10 1 3.7888 3.3085 -4.8855
11 1 5.8640 2.0543 -4.9206
12 1 3.7439 0.8967 -5.1342
13 6 3.4415 2.3037 0.0256
14 8 3.7290 3.3365 -0.5490
15 6 3.4297 2.2587 1.4975
16 6 2.5964 1.4525 2.3061
17 7 2.8852 1.6975 3.5541
18 7 3.9014 2.6581 3.6056
19 6 4.5050 3.2009 4.8251
20 6 5.1428 2.0652 5.6277
21 6 3.4250 3.8789 5.6706
22 6 4.2267 3.0025 2.3483
23 35 5.5356 4.2677 1.8367
24 1 -1.0502 -0.0005 0.0001
25 1 3.0097 -0.8866 -0.5182
26 1 3.0093 -0.0041 1.0276
27 1 6.0468 2.8330 -2.2794
28 1 1.8513 0.7554 1.9523
29 1 5.2692 3.9310 4.5583
30 1 5.9122 1.5822 5.0254
31 1 4.3787 1.3351 5.8945
32 1 5.5922 2.4692 6.5348
33 1 3.8741 4.2832 6.5777
34 1 2.9707 4.6880 5.0988
35 1 2.6608 3.1488 5.9373
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000868040084.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:27:20
Heat of formation + Delta-G solvation = 116.489714 kcal
Electronic energy + Delta-G solvation = -21677.514986 eV
Core-core repulsion = 18340.271863 eV
Total energy + Delta-G solvation = -3337.243123 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 339.032 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-42.47905 -39.83092 -36.70960 -36.40073 -34.36672 -33.20124 -32.89736 -31.26197
-30.27038 -28.24337 -28.13501 -26.48116 -24.23030 -23.26027 -21.10124 -20.77577
-19.31589 -18.65324 -17.71243 -17.41894 -16.59418 -16.38594 -15.99872 -15.55889
-15.48901 -15.27414 -14.46709 -14.32480 -13.97069 -13.70060 -13.52059 -13.16115
-13.13441 -12.99162 -12.82785 -12.67140 -12.58042 -12.37297 -12.23953 -12.05594
-11.85975 -11.40168 -11.26953 -11.04055 -10.84505 -10.31635 -9.95409 -9.52452
-9.09129 -7.98493 -5.89112 0.05803 0.33970 1.24496 1.43783 1.47123
1.50838 1.56999 1.89484 1.99945 2.45018 2.84257 3.24046 3.34674
3.53115 3.76026 3.86497 3.87416 4.01548 4.14595 4.26788 4.49937
4.63918 4.66412 4.67619 4.77129 4.78229 4.82657 5.10963 5.19514
5.21160 5.35469 5.55412 5.67448 6.26055 6.37521 6.79853 7.09689
7.29520 7.73116 8.47856 9.00197
Molecular weight = 339.03amu
Principal moments of inertia in cm(-1)
A = 0.014225 B = 0.005875 C = 0.004407
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1967.879396 B = 4764.737339 C = 6351.732850
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C -0.229 4.229
3 C 0.194 3.806
4 N -0.461 5.461
5 C -0.348 4.348
6 H 0.079 0.921
7 C 0.005 3.995
8 N -0.840 5.840
9 Si 0.974 3.026
10 H -0.290 1.290
11 H -0.284 1.284
12 H -0.258 1.258
13 C 0.529 3.471
14 O -0.544 6.544
15 C -0.243 4.243
16 C 0.059 3.941
17 N -0.274 5.274
18 N -0.332 5.332
19 C 0.130 3.870
20 C -0.152 4.152
21 C -0.152 4.152
22 C 0.099 3.901
23 Br 0.045 6.955
24 H 0.252 0.748
25 H 0.093 0.907
26 H 0.103 0.897
27 H 0.256 0.744
28 H 0.210 0.790
29 H 0.110 0.890
30 H 0.050 0.950
31 H 0.067 0.933
32 H 0.112 0.888
33 H 0.112 0.888
34 H 0.049 0.951
35 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.049 0.134 16.021 16.056
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.231 4.231
3 C 0.071 3.929
4 N -0.182 5.182
5 C -0.476 4.476
6 H 0.097 0.903
7 C -0.202 4.202
8 N -0.475 5.475
9 Si 0.799 3.201
10 H -0.217 1.217
11 H -0.209 1.209
12 H -0.182 1.182
13 C 0.317 3.683
14 O -0.422 6.422
15 C -0.261 4.261
16 C -0.126 4.126
17 N -0.096 5.096
18 N -0.116 5.116
19 C 0.031 3.969
20 C -0.210 4.210
21 C -0.210 4.210
22 C -0.111 4.111
23 Br 0.127 6.873
24 H 0.268 0.732
25 H 0.111 0.889
26 H 0.120 0.880
27 H 0.066 0.934
28 H 0.226 0.774
29 H 0.128 0.872
30 H 0.069 0.931
31 H 0.086 0.914
32 H 0.130 0.870
33 H 0.130 0.870
34 H 0.069 0.931
35 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges -0.376 0.940 16.891 16.921
hybrid contribution -0.031 0.150 -1.987 1.993
sum -0.407 1.091 14.903 14.949
Atomic orbital electron populations
1.25684 0.96509 0.98837 0.99305 1.24068 0.95564 1.01802 1.01642
1.18898 0.84276 0.90492 0.99224 1.43214 1.60136 1.08921 1.05950
1.19275 1.07251 1.39585 0.81453 0.90332 1.25984 0.94064 0.97493
1.02661 1.70093 1.09505 1.31105 1.36797 0.85241 0.77036 0.78246
0.79554 1.21731 1.20923 1.18216 1.17174 0.82827 0.83971 0.84317
1.90578 1.49308 1.30986 1.71283 1.20682 1.04523 1.05238 0.95646
1.24573 0.99737 0.99059 0.89219 1.76982 1.05038 1.07632 1.19962
1.49082 1.28022 1.30419 1.04098 1.22010 0.96443 0.97304 0.81176
1.22107 1.00867 0.97359 1.00650 1.22112 0.98135 1.00434 1.00312
1.23228 0.99823 1.00217 0.87866 1.96742 1.47703 1.51171 1.91700
0.73163 0.88939 0.87964 0.93423 0.77431 0.87202 0.93073 0.91435
0.86996 0.86971 0.93136 0.91484
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -5.53 19.25 74.32 1.43 -4.10 16
2 C -0.23 -8.33 11.68 31.12 0.36 -7.97 16
3 C 0.19 7.91 5.43 84.57 0.46 8.37 16
4 N -0.46 -23.92 2.54 -649.29 -1.65 -25.57 16
5 C -0.35 -19.48 9.31 84.06 0.78 -18.69 16
6 H 0.08 4.27 7.84 -2.91 -0.02 4.24 16
7 C 0.01 0.29 4.74 84.93 0.40 0.69 16
8 N -0.84 -50.16 10.61 21.67 0.23 -49.93 16
9 Si 0.97 45.45 29.56 68.60 2.03 47.48 16
10 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16
11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16
12 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16
13 C 0.53 28.44 6.63 86.62 0.57 29.02 16
14 O -0.54 -33.11 13.19 -4.16 -0.05 -33.17 16
15 C -0.24 -10.90 5.62 -20.13 -0.11 -11.02 16
16 C 0.06 2.21 9.56 85.67 0.82 3.03 16
17 N -0.27 -9.29 12.33 -56.25 -0.69 -9.98 16
18 N -0.33 -10.78 3.25 -320.05 -1.04 -11.82 16
19 C 0.13 2.94 3.65 44.99 0.16 3.10 16
20 C -0.15 -2.75 9.45 71.98 0.68 -2.07 16
21 C -0.15 -2.75 9.44 71.98 0.68 -2.07 16
22 C 0.10 3.94 7.40 84.32 0.62 4.57 16
23 Br 0.04 1.69 31.85 -20.37 -0.65 1.04 16
24 H 0.25 4.95 7.80 -4.41 -0.03 4.92 16
25 H 0.09 3.61 8.07 -2.39 -0.02 3.59 16
26 H 0.10 3.85 4.49 -2.39 -0.01 3.83 16
27 H 0.26 14.91 8.32 -92.71 -0.77 14.14 16
28 H 0.21 7.07 4.54 -2.91 -0.01 7.06 16
29 H 0.11 2.33 7.02 -2.38 -0.02 2.32 16
30 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16
31 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16
32 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16
33 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16
34 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16
35 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16
Total: -1.00 -74.04 323.76 6.16 -67.88
By element:
Atomic # 1 Polarization: 10.09 SS G_CDS: 1.12 Total: 11.21 kcal
Atomic # 6 Polarization: -4.01 SS G_CDS: 6.87 Total: 2.86 kcal
Atomic # 7 Polarization: -94.15 SS G_CDS: -3.15 Total: -97.30 kcal
Atomic # 8 Polarization: -33.11 SS G_CDS: -0.05 Total: -33.17 kcal
Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal
Atomic # 35 Polarization: 1.69 SS G_CDS: -0.65 Total: 1.04 kcal
Total: -74.04 6.16 -67.88 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000868040084.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 184.371 kcal
(2) G-P(sol) polarization free energy of solvation -74.039 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.332 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.158 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.882 kcal
(6) G-S(sol) free energy of system = (1) + (5) 116.490 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds