Wall clock time and date at job start Tue Mar 31 2020 22:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.31522 * 124.49055 * 2 1 4 4 C 1.46715 * 114.85038 * 179.73045 * 3 2 1 5 5 C 1.46714 * 136.02421 * 179.54529 * 4 3 2 6 6 C 1.50693 * 122.58037 * 0.72451 * 5 4 3 7 7 C 1.50697 * 109.47486 * 84.73126 * 6 5 4 8 8 O 1.20833 * 119.99747 * 0.02562 * 7 6 5 9 9 O 1.34230 * 120.00262 * 179.72204 * 7 6 5 10 10 C 1.45202 * 116.99836 * 180.27336 * 9 7 6 11 11 C 1.50701 * 109.46859 * 180.02562 * 10 9 7 12 12 O 1.21285 * 120.00079 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99566 * 180.02562 * 11 10 9 14 14 C 1.37102 * 119.99580 * 180.02562 * 13 11 10 15 15 H 1.07995 * 120.00075 * 0.02562 * 14 13 11 16 16 C 1.38949 * 119.99723 * 179.97438 * 14 13 11 17 17 N 1.31412 * 120.00524 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99739 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47108 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.47015 * 120.00714 * 18 16 14 21 21 H 1.48504 * 109.47380 * 240.00441 * 18 16 14 22 22 C 1.31531 * 114.84503 * 180.45653 * 5 4 3 23 23 S 1.75162 * 111.02045 * 0.24204 * 22 5 4 24 24 C 1.36505 * 111.98330 * 0.45339 * 4 3 2 25 25 S 1.75163 * 124.48996 * 179.97438 * 2 1 3 26 26 H 1.09002 * 109.46958 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46705 * 299.99847 * 1 2 3 28 28 H 1.08994 * 109.47124 * 59.99915 * 1 2 3 29 29 H 1.08002 * 122.57571 * 359.97438 * 3 2 1 30 30 H 1.09004 * 109.47069 * 324.73329 * 6 5 4 31 31 H 1.09000 * 109.47237 * 204.73835 * 6 5 4 32 32 H 1.08998 * 109.47630 * 300.00638 * 10 9 7 33 33 H 1.09004 * 109.46770 * 60.01042 * 10 9 7 34 34 H 0.97001 * 120.00823 * 359.97438 * 13 11 10 35 35 H 0.96995 * 120.00385 * 179.97438 * 17 16 14 36 36 H 1.08000 * 124.49062 * 180.25172 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2518 1.0840 0.0000 4 6 3.6982 0.8384 0.0063 5 6 4.9097 1.6658 0.0007 6 6 4.8636 3.1721 0.0008 7 6 4.7244 3.6703 1.4162 8 8 4.6687 2.8830 2.3311 9 8 4.6682 4.9889 1.6611 10 6 4.5400 5.3967 3.0488 11 6 4.4922 6.9008 3.1279 12 8 4.5592 7.5639 2.1145 13 7 4.3751 7.5092 4.3248 14 6 4.3311 8.8777 4.3968 15 1 4.3899 9.4680 3.4944 16 6 4.2098 9.5049 5.6307 17 7 4.1378 8.7866 6.7288 18 14 4.1506 11.3694 5.7288 19 1 4.2498 11.9404 4.3616 20 1 2.8696 11.7920 6.3495 21 1 5.2850 11.8581 6.5532 22 6 6.0393 0.9919 0.0011 23 16 5.7411 -0.7341 0.0015 24 6 3.9901 -0.4951 0.0009 25 16 2.4989 -1.4437 0.0006 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8310 2.0787 -0.0004 30 1 4.0111 3.5095 -0.5887 31 1 5.7835 3.5638 -0.4335 32 1 3.6225 4.9819 3.4662 33 1 5.3955 5.0297 3.6159 34 1 4.3212 6.9790 5.1353 35 1 4.0535 9.2245 7.5901 36 1 7.0206 1.4430 0.0013 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869944963.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:42 Heat of formation + Delta-G solvation = -70.664538 kcal Electronic energy + Delta-G solvation = -23045.818985 eV Core-core repulsion = 19327.391757 eV Total energy + Delta-G solvation = -3718.427228 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 339.043 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.43005 -38.88790 -38.07206 -36.17086 -35.24506 -34.00678 -31.79099 -31.37887 -29.66803 -28.07187 -26.56616 -24.65538 -23.70593 -21.49156 -20.34917 -19.58091 -19.05675 -18.38058 -18.06059 -17.56642 -16.63530 -16.22406 -16.04709 -15.47227 -14.60584 -14.57537 -14.41431 -14.34220 -14.31590 -13.95468 -13.90013 -13.29024 -12.85468 -12.82631 -12.57907 -12.38858 -12.23686 -11.96113 -11.87731 -11.63091 -11.15890 -11.14744 -11.07334 -11.04333 -10.41140 -10.40189 -10.39734 -10.29529 -9.62370 -9.45876 -8.52840 -8.49485 -8.09050 -7.89809 -6.50684 -3.92766 0.54477 0.70581 1.26570 1.51221 1.66508 1.76302 2.33277 2.46018 2.98630 3.11133 3.23432 3.31134 3.73191 4.08066 4.11709 4.50221 4.65164 4.73758 4.93887 5.00705 5.04604 5.14556 5.15861 5.21194 5.25366 5.30359 5.55469 5.57403 5.69558 5.77143 5.78151 6.02369 6.06769 6.13172 6.64959 7.47314 7.86065 7.96986 8.47877 9.06529 9.38839 9.88621 10.66648 Molecular weight = 339.04amu Principal moments of inertia in cm(-1) A = 0.020313 B = 0.002143 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.077181 B =13065.519169 C =13773.516613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.172 4.172 3 C -0.097 4.097 4 C -0.073 4.073 5 C -0.048 4.048 6 C -0.055 4.055 7 C 0.458 3.542 8 O -0.503 6.503 9 O -0.326 6.326 10 C 0.061 3.939 11 C 0.439 3.561 12 O -0.576 6.576 13 N -0.553 5.553 14 C -0.302 4.302 15 H 0.107 0.893 16 C 0.024 3.976 17 N -0.897 5.897 18 Si 0.933 3.067 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.280 1.280 22 C -0.193 4.193 23 S 0.165 5.835 24 C -0.261 4.261 25 S 0.154 5.846 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.145 0.855 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.395 0.605 35 H 0.273 0.727 36 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.060 -21.643 -13.730 25.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.290 4.290 3 C -0.128 4.128 4 C -0.092 4.092 5 C -0.061 4.061 6 C -0.095 4.095 7 C 0.299 3.701 8 O -0.391 6.391 9 O -0.241 6.241 10 C -0.016 4.016 11 C 0.223 3.777 12 O -0.460 6.460 13 N -0.191 5.191 14 C -0.431 4.431 15 H 0.124 0.876 16 C -0.178 4.178 17 N -0.538 5.538 18 Si 0.760 3.240 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.330 4.330 23 S 0.426 5.574 24 C -0.492 4.492 25 S 0.413 5.587 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.163 0.837 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.228 0.772 35 H 0.083 0.917 36 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -1.421 -24.157 -13.912 27.913 hybrid contribution -0.545 3.250 0.994 3.442 sum -1.966 -20.907 -12.918 24.654 Atomic orbital electron populations 1.20380 0.87140 1.03075 1.03554 1.23818 1.00307 0.95817 1.09077 1.20633 0.89567 0.99675 1.02928 1.20104 0.93385 0.90385 1.05360 1.18893 0.90285 0.94060 1.02907 1.19969 1.07101 0.90495 0.91954 1.23497 0.73288 0.81069 0.92199 1.90685 1.45200 1.56693 1.46561 1.86542 1.82595 1.24400 1.30540 1.22737 1.03246 0.96128 0.79516 1.19326 0.85898 0.87290 0.85138 1.90558 1.55251 1.65582 1.34616 1.41722 1.63384 1.07733 1.06232 1.19775 1.47612 0.80960 0.94721 0.87557 1.25319 0.96911 1.00922 0.94657 1.69620 1.49409 1.36448 0.98305 0.85744 0.77820 0.81778 0.78681 1.19076 1.20619 1.20613 1.24849 1.02122 0.96979 1.09007 1.83822 0.92799 1.03951 1.76858 1.27460 1.03285 1.00997 1.17462 1.83802 0.90660 1.06521 1.77685 0.91281 0.90104 0.90170 0.83726 0.86355 0.86185 0.89623 0.89599 0.77163 0.91672 0.80822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.33 36.01 0.37 -0.19 16 2 C -0.17 -1.68 6.38 -36.15 -0.23 -1.91 16 3 C -0.10 -1.08 10.27 -38.00 -0.39 -1.48 16 4 C -0.07 -0.90 6.51 -103.68 -0.68 -1.58 16 5 C -0.05 -0.56 4.50 -103.05 -0.46 -1.02 16 6 C -0.06 -0.61 6.12 -29.04 -0.18 -0.79 16 7 C 0.46 7.09 7.95 36.00 0.29 7.38 16 8 O -0.50 -8.98 15.78 -18.76 -0.30 -9.28 16 9 O -0.33 -5.98 9.75 -45.90 -0.45 -6.43 16 10 C 0.06 1.17 5.94 36.01 0.21 1.39 16 11 C 0.44 10.58 7.86 -10.99 -0.09 10.49 16 12 O -0.58 -15.96 16.08 -14.11 -0.23 -16.18 16 13 N -0.55 -14.01 5.29 -10.97 -0.06 -14.07 16 14 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 15 H 0.11 3.06 7.16 -52.49 -0.38 2.69 16 16 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 17 N -0.90 -24.10 13.05 55.50 0.72 -23.38 16 18 Si 0.93 20.66 29.55 -169.99 -5.02 15.63 16 19 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 20 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 22 C -0.19 -1.99 10.75 28.89 0.31 -1.68 16 23 S 0.16 1.65 23.27 -107.50 -2.50 -0.85 16 24 C -0.26 -3.06 7.70 30.11 0.23 -2.83 16 25 S 0.15 1.52 23.23 -107.50 -2.50 -0.98 16 26 H 0.07 0.39 8.13 -51.93 -0.42 -0.04 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 30 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.12 1.03 8.09 -51.93 -0.42 0.61 16 32 H 0.09 1.51 8.13 -51.93 -0.42 1.09 16 33 H 0.09 1.51 8.13 -51.93 -0.42 1.09 16 34 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 35 H 0.27 6.90 8.31 -40.82 -0.34 6.57 16 36 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 353.20 15.07 5.32 5.32 Total: -1.00 -33.79 353.20 -9.49 -43.27 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -3.63 Total: 7.05 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -0.85 Total: -0.12 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.67 Total: -37.45 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: -0.97 Total: -31.89 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -5.00 Total: -1.83 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.79 -9.49 -43.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869944963.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.392 kcal (2) G-P(sol) polarization free energy of solvation -33.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds