Wall clock time and date at job start Tue Mar 31 2020 22:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32564 * 121.64266 * 2 1 4 4 S 1.77236 * 105.31517 * 180.19373 * 3 2 1 5 5 C 1.72209 * 94.84928 * 359.76136 * 4 3 2 6 6 O 1.21817 * 127.05993 * 180.02562 * 5 4 3 7 7 N 1.34248 * 105.88087 * 0.02562 * 5 4 3 8 8 C 1.46501 * 121.37725 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47016 * 90.02158 * 8 7 5 10 10 O 1.42904 * 109.46980 * 65.00337 * 9 8 7 11 11 C 1.35003 * 116.99917 * 179.97438 * 10 9 8 12 12 O 1.21694 * 119.99801 * 359.97438 * 11 10 9 13 13 C 1.41747 * 120.00189 * 179.97438 * 11 10 9 14 14 S 1.75837 * 125.45559 * 0.04241 * 13 11 10 15 15 C 1.75647 * 91.49160 * 179.97438 * 14 13 11 16 16 C 1.32870 * 110.86683 * 359.76230 * 15 14 13 17 17 C 1.39668 * 115.27644 * 0.42425 * 16 15 14 18 18 C 1.40508 * 123.35978 * 179.83037 * 17 16 15 19 19 H 1.07999 * 120.00325 * 204.90351 * 18 17 16 20 20 C 1.40343 * 119.99925 * 24.91019 * 18 17 16 21 21 N 1.30622 * 119.99527 * 197.60170 * 20 18 17 22 22 Si 1.86793 * 120.00194 * 17.59758 * 20 18 17 23 23 H 1.48500 * 109.47353 * 263.18037 * 22 20 18 24 24 H 1.48505 * 109.46928 * 23.18294 * 22 20 18 25 25 H 1.48500 * 109.47302 * 143.17967 * 22 20 18 26 26 H 1.08993 * 109.47246 * 270.24229 * 1 2 3 27 27 H 1.09002 * 109.47221 * 30.24789 * 1 2 3 28 28 H 1.09002 * 109.46716 * 150.24365 * 1 2 3 29 29 H 1.07999 * 127.34158 * 359.93356 * 3 2 1 30 30 H 1.09004 * 109.47524 * 330.02481 * 8 7 5 31 31 H 1.09000 * 109.47496 * 210.02467 * 8 7 5 32 32 H 1.08994 * 109.47477 * 305.00137 * 9 8 7 33 33 H 1.09006 * 109.46883 * 184.99987 * 9 8 7 34 34 H 1.08002 * 124.56050 * 179.97438 * 15 14 13 35 35 H 1.08005 * 122.35799 * 180.21773 * 16 15 14 36 36 H 0.96991 * 120.00427 * 353.07014 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2025 1.1286 0.0000 4 16 3.9034 0.6303 -0.0058 5 6 3.5607 -1.0573 -0.0006 6 8 4.3673 -1.9702 -0.0014 7 7 2.2222 -1.1604 0.0044 8 6 1.5577 -2.4660 0.0093 9 6 1.3312 -2.9176 1.4535 10 8 0.4165 -2.0255 2.0936 11 6 0.1071 -2.2852 3.3817 12 8 0.6013 -3.2442 3.9447 13 6 -0.7935 -1.4409 4.0785 14 16 -1.5886 -0.0232 3.4079 15 6 -2.4139 0.2890 4.9266 16 6 -2.0938 -0.6254 5.8359 17 6 -1.1919 -1.6021 5.4077 18 6 -0.7355 -2.6461 6.2299 19 1 0.2147 -3.1175 6.0268 20 6 -1.5145 -3.0764 7.3150 21 7 -0.9709 -3.7834 8.2695 22 14 -3.3286 -2.6381 7.3945 23 1 -3.5105 -1.4359 8.2470 24 1 -3.8298 -2.3548 6.0256 25 1 -4.0877 -3.7753 7.9740 26 1 -0.3633 0.0043 1.0276 27 1 -0.3634 0.8878 -0.5177 28 1 -0.3633 -0.8922 -0.5101 29 1 1.8152 2.1367 -0.0010 30 1 2.1844 -3.1947 -0.5051 31 1 0.5981 -2.3873 -0.5016 32 1 2.2802 -2.9110 1.9894 33 1 0.9182 -3.9264 1.4582 34 1 -3.0929 1.1114 5.0972 35 1 -2.4997 -0.6123 6.8367 36 1 -0.0571 -4.0963 8.1810 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870043318.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:56 Heat of formation + Delta-G solvation = -67.246899 kcal Electronic energy + Delta-G solvation = -24690.602262 eV Core-core repulsion = 20972.323234 eV Total energy + Delta-G solvation = -3718.279028 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 339.043 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.03367 -39.26520 -37.56232 -37.12898 -35.27941 -33.64324 -32.83818 -30.69920 -29.42788 -27.81824 -26.79640 -24.35336 -23.02745 -22.11205 -21.09840 -20.31931 -19.37606 -18.13376 -17.87420 -17.25504 -16.90408 -16.35851 -15.66629 -15.47808 -15.05384 -14.90651 -14.31489 -14.23802 -13.73485 -13.63650 -13.51224 -13.42187 -12.98534 -12.69437 -12.57413 -12.21729 -11.98214 -11.80727 -11.62119 -11.47000 -11.18617 -11.05010 -10.94160 -10.29848 -10.15448 -10.11698 -9.86621 -9.78786 -9.56850 -9.47735 -8.96012 -8.01042 -7.91034 -7.75731 -7.49095 -4.88935 0.97856 1.42424 1.58213 1.82061 2.19257 2.71827 2.76268 2.84878 3.06337 3.20669 3.32594 3.38975 3.61608 3.66907 4.06593 4.50710 4.75393 4.88371 4.89726 5.14009 5.20260 5.33906 5.53044 5.58403 5.63935 5.65992 5.77029 5.97200 6.06551 6.27388 6.57718 6.69181 6.77381 7.03111 7.04844 7.18968 7.30629 7.53043 7.83692 8.18394 8.35572 9.15047 9.49596 Molecular weight = 339.04amu Principal moments of inertia in cm(-1) A = 0.018726 B = 0.003610 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.926608 B = 7754.239714 C = 8506.100324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.127 3.873 3 C -0.250 4.250 4 S -0.011 6.011 5 C 0.480 3.520 6 O -0.480 6.480 7 N -0.527 5.527 8 C 0.104 3.896 9 C 0.056 3.944 10 O -0.367 6.367 11 C 0.531 3.469 12 O -0.547 6.547 13 C -0.414 4.414 14 S 0.009 5.991 15 C -0.172 4.172 16 C -0.165 4.165 17 C 0.110 3.890 18 C -0.405 4.405 19 H 0.111 0.889 20 C 0.032 3.968 21 N -0.765 5.765 22 Si 1.067 2.933 23 H -0.270 1.270 24 H -0.254 1.254 25 H -0.279 1.279 26 H 0.103 0.897 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.191 0.809 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.148 0.852 35 H 0.125 0.875 36 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.029 8.101 -12.860 15.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.017 3.983 3 C -0.387 4.387 4 S 0.231 5.769 5 C 0.162 3.838 6 O -0.361 6.361 7 N -0.247 5.247 8 C -0.021 4.021 9 C -0.020 4.020 10 O -0.287 6.287 11 C 0.388 3.612 12 O -0.443 6.443 13 C -0.530 4.530 14 S 0.267 5.733 15 C -0.307 4.307 16 C -0.199 4.199 17 C 0.099 3.901 18 C -0.435 4.435 19 H 0.129 0.871 20 C -0.194 4.194 21 N -0.385 5.385 22 Si 0.890 3.110 23 H -0.196 1.196 24 H -0.178 1.178 25 H -0.206 1.206 26 H 0.122 0.878 27 H 0.103 0.897 28 H 0.092 0.908 29 H 0.208 0.792 30 H 0.128 0.872 31 H 0.122 0.878 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.166 0.834 35 H 0.143 0.857 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.398 8.420 -13.132 15.662 hybrid contribution 0.469 -1.448 0.683 1.668 sum -0.928 6.973 -12.449 14.299 Atomic orbital electron populations 1.20889 0.86246 1.03359 1.05475 1.19490 0.96109 0.84519 0.98187 1.24787 0.92527 1.01321 1.20114 1.84965 1.09370 1.01314 1.81210 1.21597 0.83786 0.95717 0.82655 1.90945 1.48774 1.42526 1.53818 1.46033 1.06184 1.07935 1.64592 1.22079 0.99450 0.83400 0.97144 1.22628 0.94039 0.93941 0.91391 1.86167 1.60163 1.53619 1.28752 1.18196 0.80759 0.83995 0.78296 1.90756 1.54884 1.31032 1.67621 1.20746 1.24687 1.09959 0.97639 1.82976 1.46273 1.29678 1.14385 1.25258 1.04735 1.03141 0.97553 1.20294 1.02342 0.97250 0.99968 1.16877 0.90045 0.93221 0.89914 1.21267 1.05330 1.11286 1.05607 0.87114 1.27836 1.08090 0.93572 0.89917 1.70388 1.18109 1.22331 1.27719 0.83746 0.71664 0.76913 0.78636 1.19599 1.17805 1.20552 0.87836 0.89731 0.90790 0.79229 0.87190 0.87752 0.91825 0.90419 0.83412 0.85722 0.88917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.07 8.81 36.01 0.32 -0.76 16 2 C 0.13 1.58 6.30 -82.51 -0.52 1.06 16 3 C -0.25 -2.84 11.25 28.82 0.32 -2.52 16 4 S -0.01 -0.14 22.97 -107.50 -2.47 -2.61 16 5 C 0.48 7.59 8.27 53.82 0.45 8.03 16 6 O -0.48 -8.84 17.55 5.08 0.09 -8.75 16 7 N -0.53 -7.38 2.58 -117.28 -0.30 -7.69 16 8 C 0.10 1.32 5.73 -4.04 -0.02 1.30 16 9 C 0.06 0.94 5.72 37.16 0.21 1.15 16 10 O -0.37 -7.12 7.64 -41.33 -0.32 -7.43 16 11 C 0.53 12.71 7.73 32.07 0.25 12.96 16 12 O -0.55 -14.71 14.10 -19.41 -0.27 -14.98 16 13 C -0.41 -9.82 6.36 -37.70 -0.24 -10.06 16 14 S 0.01 0.18 21.61 -107.50 -2.32 -2.15 16 15 C -0.17 -3.16 11.11 28.88 0.32 -2.84 16 16 C -0.17 -3.49 7.24 -40.90 -0.30 -3.78 16 17 C 0.11 2.69 5.16 -107.96 -0.56 2.13 16 18 C -0.41 -10.57 8.79 -37.94 -0.33 -10.90 16 19 H 0.11 3.21 6.24 -52.49 -0.33 2.88 16 20 C 0.03 0.77 5.47 -17.27 -0.09 0.67 16 21 N -0.77 -18.87 13.64 55.57 0.76 -18.11 16 22 Si 1.07 21.18 24.91 -169.99 -4.23 16.94 16 23 H -0.27 -4.87 6.81 56.52 0.38 -4.49 16 24 H -0.25 -4.99 6.57 56.52 0.37 -4.62 16 25 H -0.28 -5.41 7.11 56.52 0.40 -5.00 16 26 H 0.10 1.39 5.72 -51.93 -0.30 1.09 16 27 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 28 H 0.07 0.71 6.18 -51.93 -0.32 0.39 16 29 H 0.19 1.58 8.06 -52.49 -0.42 1.16 16 30 H 0.11 1.25 7.80 -51.93 -0.41 0.85 16 31 H 0.10 1.06 6.12 -51.93 -0.32 0.74 16 32 H 0.06 1.21 8.13 -51.93 -0.42 0.79 16 33 H 0.08 1.24 8.13 -51.93 -0.42 0.82 16 34 H 0.15 2.12 8.06 -52.49 -0.42 1.70 16 35 H 0.13 2.45 4.52 -52.48 -0.24 2.21 16 36 H 0.30 7.28 8.73 -40.82 -0.36 6.93 16 LS Contribution 329.21 15.07 4.96 4.96 Total: -1.00 -30.16 329.21 -7.52 -37.68 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -3.22 Total: 5.69 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -0.20 Total: -3.55 kcal Atomic # 7 Polarization: -26.25 SS G_CDS: 0.46 Total: -25.80 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: -0.50 Total: -31.16 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.23 Total: 16.94 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -4.79 Total: -4.76 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.16 -7.52 -37.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870043318.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.567 kcal (2) G-P(sol) polarization free energy of solvation -30.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds