Wall clock time and date at job start Tue Mar 31 2020 22:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32564 * 121.64266 * 2 1 4 4 S 1.77236 * 105.31517 * 180.19373 * 3 2 1 5 5 C 1.72209 * 94.84928 * 359.76136 * 4 3 2 6 6 O 1.21817 * 127.05993 * 180.02562 * 5 4 3 7 7 N 1.34248 * 105.88087 * 0.02562 * 5 4 3 8 8 C 1.46501 * 121.37725 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47016 * 90.02158 * 8 7 5 10 10 O 1.42904 * 109.46980 * 65.00337 * 9 8 7 11 11 C 1.35003 * 116.99917 * 179.97438 * 10 9 8 12 12 O 1.21694 * 119.99801 * 359.97438 * 11 10 9 13 13 C 1.41747 * 120.00189 * 179.97438 * 11 10 9 14 14 S 1.75837 * 125.45559 * 0.04241 * 13 11 10 15 15 C 1.75647 * 91.49160 * 179.97438 * 14 13 11 16 16 C 1.32870 * 110.86683 * 359.76230 * 15 14 13 17 17 C 1.39668 * 115.27644 * 0.42425 * 16 15 14 18 18 C 1.40508 * 123.35978 * 179.83037 * 17 16 15 19 19 H 1.07999 * 120.00325 * 204.90351 * 18 17 16 20 20 C 1.40343 * 119.99925 * 24.91019 * 18 17 16 21 21 N 1.30622 * 119.99527 * 197.60170 * 20 18 17 22 22 Si 1.86793 * 120.00194 * 17.59758 * 20 18 17 23 23 H 1.48500 * 109.47353 * 263.18037 * 22 20 18 24 24 H 1.48505 * 109.46928 * 23.18294 * 22 20 18 25 25 H 1.48500 * 109.47302 * 143.17967 * 22 20 18 26 26 H 1.08993 * 109.47246 * 270.24229 * 1 2 3 27 27 H 1.09002 * 109.47221 * 30.24789 * 1 2 3 28 28 H 1.09002 * 109.46716 * 150.24365 * 1 2 3 29 29 H 1.07999 * 127.34158 * 359.93356 * 3 2 1 30 30 H 1.09004 * 109.47524 * 330.02481 * 8 7 5 31 31 H 1.09000 * 109.47496 * 210.02467 * 8 7 5 32 32 H 1.08994 * 109.47477 * 305.00137 * 9 8 7 33 33 H 1.09006 * 109.46883 * 184.99987 * 9 8 7 34 34 H 1.08002 * 124.56050 * 179.97438 * 15 14 13 35 35 H 1.08005 * 122.35799 * 180.21773 * 16 15 14 36 36 H 0.96991 * 120.00427 * 353.07014 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2025 1.1286 0.0000 4 16 3.9034 0.6303 -0.0058 5 6 3.5607 -1.0573 -0.0006 6 8 4.3673 -1.9702 -0.0014 7 7 2.2222 -1.1604 0.0044 8 6 1.5577 -2.4660 0.0093 9 6 1.3312 -2.9176 1.4535 10 8 0.4165 -2.0255 2.0936 11 6 0.1071 -2.2852 3.3817 12 8 0.6013 -3.2442 3.9447 13 6 -0.7935 -1.4409 4.0785 14 16 -1.5886 -0.0232 3.4079 15 6 -2.4139 0.2890 4.9266 16 6 -2.0938 -0.6254 5.8359 17 6 -1.1919 -1.6021 5.4077 18 6 -0.7355 -2.6461 6.2299 19 1 0.2147 -3.1175 6.0268 20 6 -1.5145 -3.0764 7.3150 21 7 -0.9709 -3.7834 8.2695 22 14 -3.3286 -2.6381 7.3945 23 1 -3.5105 -1.4359 8.2470 24 1 -3.8298 -2.3548 6.0256 25 1 -4.0877 -3.7753 7.9740 26 1 -0.3633 0.0043 1.0276 27 1 -0.3634 0.8878 -0.5177 28 1 -0.3633 -0.8922 -0.5101 29 1 1.8152 2.1367 -0.0010 30 1 2.1844 -3.1947 -0.5051 31 1 0.5981 -2.3873 -0.5016 32 1 2.2802 -2.9110 1.9894 33 1 0.9182 -3.9264 1.4582 34 1 -3.0929 1.1114 5.0972 35 1 -2.4997 -0.6123 6.8367 36 1 -0.0571 -4.0963 8.1810 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870043318.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:56 Heat of formation + Delta-G solvation = -86.190449 kcal Electronic energy + Delta-G solvation = -24691.423716 eV Core-core repulsion = 20972.323234 eV Total energy + Delta-G solvation = -3719.100482 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 339.043 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.17050 -41.01313 -38.91753 -38.64816 -37.07085 -35.40584 -33.98023 -31.84151 -31.07281 -29.19429 -28.26744 -25.57259 -24.42080 -23.60288 -22.69741 -21.42545 -21.16010 -19.73235 -19.02145 -18.78845 -18.31019 -17.70381 -17.14216 -17.04838 -16.66150 -16.15216 -15.76682 -15.46320 -15.30466 -15.05904 -14.70278 -14.56688 -14.25898 -14.12090 -13.95713 -13.66987 -13.47107 -13.28946 -13.01026 -12.78809 -12.65496 -12.26840 -12.08382 -12.00004 -11.73596 -11.65533 -11.43786 -11.21112 -11.11175 -10.86695 -10.62215 -9.81552 -9.47617 -9.17424 -8.96550 -6.75288 -0.13904 -0.11344 0.35971 0.83300 1.08077 1.21499 1.27136 1.47874 1.55463 1.64931 1.70276 1.78534 2.03852 2.07600 2.24904 3.05140 3.49358 3.61599 3.79481 4.00191 4.17143 4.26382 4.30028 4.37909 4.53048 4.61286 4.75480 4.84997 4.91012 4.99251 5.09083 5.17083 5.33834 5.37746 5.40802 5.67890 5.73818 6.02334 6.17369 6.23939 6.54008 7.29108 7.63103 Molecular weight = 339.04amu Principal moments of inertia in cm(-1) A = 0.018726 B = 0.003610 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.926608 B = 7754.239714 C = 8506.100324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.104 3.896 3 C -0.231 4.231 4 S -0.002 6.002 5 C 0.458 3.542 6 O -0.524 6.524 7 N -0.529 5.529 8 C 0.112 3.888 9 C 0.054 3.946 10 O -0.348 6.348 11 C 0.523 3.477 12 O -0.589 6.589 13 C -0.452 4.452 14 S 0.089 5.911 15 C -0.142 4.142 16 C -0.205 4.205 17 C 0.106 3.894 18 C -0.455 4.455 19 H 0.059 0.941 20 C 0.005 3.995 21 N -0.792 5.792 22 Si 1.101 2.899 23 H -0.232 1.232 24 H -0.248 1.248 25 H -0.276 1.276 26 H 0.078 0.922 27 H 0.120 0.880 28 H 0.083 0.917 29 H 0.228 0.772 30 H 0.123 0.877 31 H 0.140 0.860 32 H 0.030 0.970 33 H 0.082 0.918 34 H 0.203 0.797 35 H 0.140 0.860 36 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.299 12.030 -14.977 19.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.005 4.005 3 C -0.367 4.367 4 S 0.241 5.759 5 C 0.142 3.858 6 O -0.408 6.408 7 N -0.249 5.249 8 C -0.012 4.012 9 C -0.023 4.023 10 O -0.267 6.267 11 C 0.381 3.619 12 O -0.489 6.489 13 C -0.568 4.568 14 S 0.347 5.653 15 C -0.277 4.277 16 C -0.238 4.238 17 C 0.095 3.905 18 C -0.486 4.486 19 H 0.077 0.923 20 C -0.214 4.214 21 N -0.413 5.413 22 Si 0.917 3.083 23 H -0.156 1.156 24 H -0.171 1.171 25 H -0.202 1.202 26 H 0.097 0.903 27 H 0.138 0.862 28 H 0.102 0.898 29 H 0.244 0.756 30 H 0.141 0.859 31 H 0.158 0.842 32 H 0.048 0.952 33 H 0.100 0.900 34 H 0.220 0.780 35 H 0.158 0.842 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.662 12.400 -15.282 20.225 hybrid contribution 1.589 -2.500 1.043 3.141 sum -3.072 9.900 -14.239 17.612 Atomic orbital electron populations 1.20953 0.84513 1.05757 1.04376 1.19948 0.97200 0.84087 0.99250 1.25383 0.90712 1.02671 1.17955 1.84954 1.11292 0.99297 1.80387 1.22020 0.84276 0.96498 0.82973 1.90911 1.49944 1.44122 1.55845 1.46150 1.05866 1.08927 1.63991 1.22142 1.01410 0.83571 0.94112 1.22844 0.91861 0.94298 0.93251 1.86144 1.60209 1.53764 1.26559 1.18591 0.80376 0.83455 0.79457 1.90749 1.56342 1.32869 1.68903 1.21384 1.24592 1.12366 0.98459 1.82630 1.43969 1.25266 1.13412 1.25977 1.02864 1.02617 0.96241 1.20283 1.03939 0.97749 1.01805 1.17276 0.90312 0.92964 0.89902 1.21046 1.04931 1.13927 1.08693 0.92306 1.29139 1.11224 0.92377 0.88682 1.70475 1.17486 1.24646 1.28709 0.83423 0.66897 0.78392 0.79598 1.15639 1.17138 1.20226 0.90312 0.86155 0.89811 0.75557 0.85924 0.84250 0.95154 0.90002 0.77985 0.84236 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.65 8.81 71.24 0.63 -1.02 16 2 C 0.10 2.26 6.30 40.71 0.26 2.52 16 3 C -0.23 -4.39 11.25 66.67 0.75 -3.64 16 4 S 0.00 -0.05 22.97 -56.49 -1.30 -1.35 16 5 C 0.46 14.48 8.27 129.87 1.07 15.55 16 6 O -0.52 -20.01 17.55 -4.72 -0.08 -20.10 16 7 N -0.53 -14.14 2.58 -643.42 -1.66 -15.80 16 8 C 0.11 2.72 5.73 86.38 0.49 3.21 16 9 C 0.05 1.83 5.72 71.98 0.41 2.24 16 10 O -0.35 -13.44 7.64 -59.22 -0.45 -13.89 16 11 C 0.52 25.80 7.73 68.69 0.53 26.33 16 12 O -0.59 -34.03 14.10 19.20 0.27 -33.76 16 13 C -0.45 -21.28 6.36 23.49 0.15 -21.13 16 14 S 0.09 2.97 21.61 -56.49 -1.22 1.75 16 15 C -0.14 -4.45 11.11 66.64 0.74 -3.71 16 16 C -0.21 -8.09 7.24 21.44 0.16 -7.93 16 17 C 0.11 5.25 5.16 -22.03 -0.11 5.13 16 18 C -0.46 -25.32 8.79 23.34 0.21 -25.11 16 19 H 0.06 3.79 6.24 -2.91 -0.02 3.77 16 20 C 0.00 0.25 5.47 85.38 0.47 0.72 16 21 N -0.79 -41.62 13.64 21.90 0.30 -41.32 16 22 Si 1.10 41.78 24.91 68.60 1.71 43.49 16 23 H -0.23 -7.41 6.81 99.48 0.68 -6.73 16 24 H -0.25 -9.04 6.57 99.48 0.65 -8.39 16 25 H -0.28 -10.20 7.11 99.48 0.71 -9.50 16 26 H 0.08 1.78 5.72 -2.39 -0.01 1.77 16 27 H 0.12 1.17 8.10 -2.39 -0.02 1.15 16 28 H 0.08 1.24 6.18 -2.39 -0.01 1.23 16 29 H 0.23 2.51 8.06 -2.91 -0.02 2.49 16 30 H 0.12 2.71 7.80 -2.38 -0.02 2.70 16 31 H 0.14 2.40 6.12 -2.39 -0.01 2.39 16 32 H 0.03 1.23 8.13 -2.39 -0.02 1.21 16 33 H 0.08 2.71 8.13 -2.38 -0.02 2.69 16 34 H 0.20 4.16 8.06 -2.91 -0.02 4.14 16 35 H 0.14 5.04 4.52 -2.91 -0.01 5.02 16 36 H 0.28 15.26 8.73 -92.71 -0.81 14.45 16 Total: -1.00 -73.77 329.21 4.35 -69.42 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 1.03 Total: 18.39 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: 5.75 Total: -6.84 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -1.36 Total: -57.12 kcal Atomic # 8 Polarization: -67.49 SS G_CDS: -0.26 Total: -67.75 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 1.71 Total: 43.49 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -2.52 Total: 0.40 kcal Total: -73.77 4.35 -69.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870043318.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.769 kcal (2) G-P(sol) polarization free energy of solvation -73.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds