Wall clock time and date at job start Tue Mar 31 2020 22:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47114 * 2 1 4 4 C 1.46500 * 119.99983 * 274.06016 * 3 2 1 5 5 C 1.50701 * 109.46922 * 280.93015 * 4 3 2 6 6 H 1.07997 * 120.00113 * 3.26118 * 5 4 3 7 7 C 1.37877 * 119.99496 * 183.25948 * 5 4 3 8 8 N 1.31511 * 120.00275 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99720 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47025 * 89.99948 * 9 7 5 11 11 H 1.48500 * 109.47198 * 209.99887 * 9 7 5 12 12 H 1.48498 * 109.47320 * 330.00067 * 9 7 5 13 13 S 1.65604 * 120.00152 * 94.06032 * 3 2 1 14 14 O 1.42104 * 106.40170 * 336.47267 * 13 3 2 15 15 O 1.42099 * 106.40310 * 203.55250 * 13 3 2 16 16 N 1.65599 * 107.21736 * 90.01109 * 13 3 2 17 17 C 1.46492 * 120.00283 * 65.60114 * 16 13 3 18 18 C 1.50694 * 109.47382 * 164.32175 * 17 16 13 19 19 N 1.28991 * 124.90064 * 89.99953 * 18 17 16 20 20 C 1.31827 * 117.13414 * 180.02562 * 19 18 17 21 21 C 1.33756 * 114.46378 * 359.97438 * 20 19 18 22 22 Cl 1.73600 * 126.04782 * 179.97438 * 21 20 19 23 23 S 1.70969 * 124.90318 * 270.04032 * 18 17 16 24 24 H 1.09000 * 109.47094 * 65.05481 * 1 2 3 25 25 H 1.09003 * 109.47187 * 185.05083 * 1 2 3 26 26 H 1.09005 * 109.47498 * 305.05085 * 1 2 3 27 27 H 1.08995 * 109.47401 * 239.99573 * 2 1 3 28 28 H 1.08999 * 109.46833 * 119.99943 * 2 1 3 29 29 H 1.09002 * 109.47186 * 40.93334 * 4 3 2 30 30 H 1.09003 * 109.46930 * 160.92871 * 4 3 2 31 31 H 0.97004 * 119.99996 * 180.02562 * 8 7 5 32 32 H 0.97000 * 119.99880 * 245.59937 * 16 13 3 33 33 H 1.09006 * 109.46837 * 44.31968 * 17 16 13 34 34 H 1.09004 * 109.47313 * 284.32594 * 17 16 13 35 35 H 1.08002 * 122.77332 * 179.72959 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1778 2.1017 -1.2655 5 6 3.4577 1.6681 -1.9326 6 1 4.0625 0.8920 -1.4875 7 6 3.8564 2.2623 -3.1111 8 7 3.1195 3.2071 -3.6534 9 14 5.4425 1.7244 -3.9384 10 1 5.1563 0.6156 -4.8838 11 1 6.0265 2.8700 -4.6813 12 1 6.4055 1.2601 -2.9078 13 16 2.3901 2.1280 1.4305 14 8 1.6493 1.4547 2.4391 15 8 2.2869 3.5251 1.1925 16 7 3.9878 1.8234 1.7418 17 6 5.0227 2.3684 0.8599 18 6 6.3617 2.2873 1.5466 19 7 7.1713 1.2860 1.4693 20 6 8.3057 1.3774 2.1346 21 6 8.4608 2.5212 2.8105 22 17 9.8320 2.9553 3.7827 23 16 7.0265 3.5086 2.5413 24 1 -0.3633 0.4334 -0.9318 25 1 -0.3634 -1.0237 0.0905 26 1 -0.3634 0.5902 0.8413 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.3341 1.8796 -1.9190 30 1 2.2143 3.1737 -1.0712 31 1 3.3999 3.6249 -4.4827 32 1 4.2383 1.2841 2.5082 33 1 4.7941 3.4094 0.6313 34 1 5.0530 1.7916 -0.0646 35 1 9.0469 0.5919 2.1371 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872567580.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:04 Heat of formation + Delta-G solvation = -36.628835 kcal Electronic energy + Delta-G solvation = -23272.947032 eV Core-core repulsion = 19585.855604 eV Total energy + Delta-G solvation = -3687.091428 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 339.026 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.91562 -37.11181 -36.77033 -36.10296 -35.31339 -35.14331 -32.77229 -30.37026 -29.97219 -27.04402 -26.63395 -23.83354 -23.19702 -21.75442 -20.26460 -19.11057 -18.56393 -17.21541 -16.93783 -16.56206 -16.22450 -15.76907 -15.23883 -14.74120 -14.53971 -14.40027 -13.86660 -13.42012 -13.27088 -12.97050 -12.81195 -12.46145 -12.30226 -12.09937 -12.03702 -11.73740 -11.64723 -11.52982 -11.40086 -11.10389 -11.08541 -10.96856 -10.56532 -10.42510 -10.07729 -9.89191 -9.86632 -9.45297 -9.16720 -9.07417 -8.56778 -8.12104 -6.17977 -4.25568 0.28073 0.65271 1.20303 1.40945 1.93843 2.53199 3.21932 3.30337 3.32666 3.47323 3.97571 4.06813 4.31076 4.78661 4.96076 5.02031 5.15560 5.39478 5.45833 5.70736 5.78229 5.84559 5.91823 6.11179 6.15326 6.32550 6.64245 6.67756 7.11017 7.32084 7.37634 7.46878 7.60058 7.79099 8.08507 8.80098 9.41224 10.89381 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.011005 B = 0.004538 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.691347 B = 6168.622091 C = 7879.040644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.131 3.869 3 N -0.989 5.989 4 C 0.242 3.758 5 C -0.545 4.545 6 H 0.066 0.934 7 C 0.069 3.931 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.269 1.269 13 S 2.785 3.215 14 O -0.993 6.993 15 O -0.977 6.977 16 N -1.126 6.126 17 C 0.190 3.810 18 C 0.056 3.944 19 N -0.449 5.449 20 C 0.060 3.940 21 C -0.205 4.205 22 Cl -0.001 7.001 23 S 0.189 5.811 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.037 0.963 30 H 0.055 0.945 31 H 0.265 0.735 32 H 0.410 0.590 33 H 0.104 0.896 34 H 0.128 0.872 35 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.762 -2.503 11.675 14.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.004 3.996 3 N -0.831 5.831 4 C 0.120 3.880 5 C -0.585 4.585 6 H 0.084 0.916 7 C -0.135 4.135 8 N -0.522 5.522 9 Si 0.714 3.286 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.194 1.194 13 S 2.793 3.207 14 O -0.978 6.978 15 O -0.960 6.960 16 N -0.885 5.885 17 C 0.061 3.939 18 C -0.223 4.223 19 N -0.164 5.164 20 C -0.095 4.095 21 C -0.353 4.353 22 Cl 0.027 6.973 23 S 0.442 5.558 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.101 0.899 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.242 0.758 33 H 0.122 0.878 34 H 0.146 0.854 35 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 6.714 -1.133 11.963 13.765 hybrid contribution 2.238 -1.426 -0.472 2.695 sum 8.951 -2.558 11.491 14.789 Atomic orbital electron populations 1.22202 0.96920 1.01376 1.02348 1.20983 0.93594 0.82682 1.02325 1.57708 1.78442 1.23213 1.23778 1.19251 0.97340 0.92520 0.78933 1.21550 1.07394 1.21524 1.07987 0.91557 1.24934 0.97053 0.94650 0.96908 1.69930 1.37990 1.24744 1.19562 0.86675 0.83612 0.78360 0.79977 1.20525 1.21111 1.19380 1.01801 0.72351 0.73768 0.72784 1.93564 1.69194 1.76414 1.58595 1.93585 1.85698 1.31083 1.85659 1.56108 1.24972 1.68342 1.39055 1.20119 0.78538 1.02337 0.92931 1.27357 1.01464 0.92767 1.00667 1.66518 1.02514 1.26970 1.20358 1.21958 0.95716 0.96867 0.94938 1.27061 0.98054 1.01271 1.08939 1.98365 1.38556 1.92426 1.67954 1.84329 1.08043 1.20133 1.43261 0.92115 0.92353 0.92686 0.89914 0.91915 0.94528 0.92692 0.92472 0.75757 0.87774 0.85415 0.79958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.59 10.24 37.16 0.38 -2.21 16 2 C 0.13 2.17 6.01 -4.04 -0.02 2.15 16 3 N -0.99 -19.11 2.84 -115.67 -0.33 -19.44 16 4 C 0.24 5.58 5.48 -5.19 -0.03 5.55 16 5 C -0.55 -13.14 7.94 -34.44 -0.27 -13.42 16 6 H 0.07 1.54 6.74 -52.49 -0.35 1.19 16 7 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.88 -24.00 13.29 55.43 0.74 -23.27 16 9 Si 0.89 19.80 29.54 -169.99 -5.02 14.78 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 13 S 2.79 51.78 6.11 -107.50 -0.66 51.13 16 14 O -0.99 -19.20 17.09 -57.17 -0.98 -20.17 16 15 O -0.98 -21.08 16.09 -57.17 -0.92 -22.00 16 16 N -1.13 -17.59 6.04 -11.66 -0.07 -17.66 16 17 C 0.19 3.10 6.73 -5.20 -0.04 3.07 16 18 C 0.06 0.82 6.78 -13.47 -0.09 0.73 16 19 N -0.45 -6.64 10.54 -11.84 -0.12 -6.77 16 20 C 0.06 0.73 11.32 -19.13 -0.22 0.51 16 21 C -0.20 -2.37 7.21 29.16 0.21 -2.16 16 22 Cl 0.00 -0.01 29.31 -51.86 -1.52 -1.53 16 23 S 0.19 2.31 23.18 -107.50 -2.49 -0.18 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.87 8.11 -51.93 -0.42 0.45 16 27 H 0.08 1.38 8.05 -51.93 -0.42 0.96 16 28 H 0.06 0.94 7.64 -51.93 -0.40 0.54 16 29 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 1.39 6.83 -51.93 -0.35 1.04 16 31 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 32 H 0.41 5.46 8.65 -34.47 -0.30 5.16 16 33 H 0.10 1.72 7.72 -51.93 -0.40 1.32 16 34 H 0.13 2.34 5.58 -51.93 -0.29 2.05 16 35 H 0.18 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 342.64 15.07 5.16 5.16 Total: -1.00 -29.44 342.64 -10.15 -39.58 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -3.76 Total: 4.49 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -0.18 Total: -4.13 kcal Atomic # 7 Polarization: -67.34 SS G_CDS: 0.21 Total: -67.13 kcal Atomic # 8 Polarization: -40.27 SS G_CDS: -1.90 Total: -42.17 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Atomic # 16 Polarization: 54.09 SS G_CDS: -3.15 Total: 50.94 kcal Atomic # 17 Polarization: -0.01 SS G_CDS: -1.52 Total: -1.53 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.44 -10.15 -39.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872567580.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.955 kcal (2) G-P(sol) polarization free energy of solvation -29.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds