Wall clock time and date at job start Tue Mar 31 2020 22:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47114 * 2 1 4 4 C 1.46500 * 119.99983 * 274.06016 * 3 2 1 5 5 C 1.50701 * 109.46922 * 280.93015 * 4 3 2 6 6 H 1.07997 * 120.00113 * 3.26118 * 5 4 3 7 7 C 1.37877 * 119.99496 * 183.25948 * 5 4 3 8 8 N 1.31511 * 120.00275 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99720 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47025 * 89.99948 * 9 7 5 11 11 H 1.48500 * 109.47198 * 209.99887 * 9 7 5 12 12 H 1.48498 * 109.47320 * 330.00067 * 9 7 5 13 13 S 1.65604 * 120.00152 * 94.06032 * 3 2 1 14 14 O 1.42104 * 106.40170 * 336.47267 * 13 3 2 15 15 O 1.42099 * 106.40310 * 203.55250 * 13 3 2 16 16 N 1.65599 * 107.21736 * 90.01109 * 13 3 2 17 17 C 1.46492 * 120.00283 * 65.60114 * 16 13 3 18 18 C 1.50694 * 109.47382 * 164.32175 * 17 16 13 19 19 N 1.28991 * 124.90064 * 89.99953 * 18 17 16 20 20 C 1.31827 * 117.13414 * 180.02562 * 19 18 17 21 21 C 1.33756 * 114.46378 * 359.97438 * 20 19 18 22 22 Cl 1.73600 * 126.04782 * 179.97438 * 21 20 19 23 23 S 1.70969 * 124.90318 * 270.04032 * 18 17 16 24 24 H 1.09000 * 109.47094 * 65.05481 * 1 2 3 25 25 H 1.09003 * 109.47187 * 185.05083 * 1 2 3 26 26 H 1.09005 * 109.47498 * 305.05085 * 1 2 3 27 27 H 1.08995 * 109.47401 * 239.99573 * 2 1 3 28 28 H 1.08999 * 109.46833 * 119.99943 * 2 1 3 29 29 H 1.09002 * 109.47186 * 40.93334 * 4 3 2 30 30 H 1.09003 * 109.46930 * 160.92871 * 4 3 2 31 31 H 0.97004 * 119.99996 * 180.02562 * 8 7 5 32 32 H 0.97000 * 119.99880 * 245.59937 * 16 13 3 33 33 H 1.09006 * 109.46837 * 44.31968 * 17 16 13 34 34 H 1.09004 * 109.47313 * 284.32594 * 17 16 13 35 35 H 1.08002 * 122.77332 * 179.72959 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1778 2.1017 -1.2655 5 6 3.4577 1.6681 -1.9326 6 1 4.0625 0.8920 -1.4875 7 6 3.8564 2.2623 -3.1111 8 7 3.1195 3.2071 -3.6534 9 14 5.4425 1.7244 -3.9384 10 1 5.1563 0.6156 -4.8838 11 1 6.0265 2.8700 -4.6813 12 1 6.4055 1.2601 -2.9078 13 16 2.3901 2.1280 1.4305 14 8 1.6493 1.4547 2.4391 15 8 2.2869 3.5251 1.1925 16 7 3.9878 1.8234 1.7418 17 6 5.0227 2.3684 0.8599 18 6 6.3617 2.2873 1.5466 19 7 7.1713 1.2860 1.4693 20 6 8.3057 1.3774 2.1346 21 6 8.4608 2.5212 2.8105 22 17 9.8320 2.9553 3.7827 23 16 7.0265 3.5086 2.5413 24 1 -0.3633 0.4334 -0.9318 25 1 -0.3634 -1.0237 0.0905 26 1 -0.3634 0.5902 0.8413 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.3341 1.8796 -1.9190 30 1 2.2143 3.1737 -1.0712 31 1 3.3999 3.6249 -4.4827 32 1 4.2383 1.2841 2.5082 33 1 4.7941 3.4094 0.6313 34 1 5.0530 1.7916 -0.0646 35 1 9.0469 0.5919 2.1371 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872567580.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:03 Heat of formation + Delta-G solvation = -57.798895 kcal Electronic energy + Delta-G solvation = -23273.865035 eV Core-core repulsion = 19585.855604 eV Total energy + Delta-G solvation = -3688.009430 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 339.026 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.93997 -38.36363 -37.97574 -37.67625 -36.91619 -36.44056 -34.64654 -31.49838 -31.43605 -28.51964 -28.09222 -24.93352 -24.90591 -23.27055 -21.30431 -20.52854 -19.70198 -18.69377 -18.56477 -18.25723 -17.50331 -17.03765 -16.74376 -16.14751 -15.79253 -15.58731 -15.30888 -14.80433 -14.63279 -14.48395 -14.13303 -13.75868 -13.61031 -13.39826 -13.34603 -13.23907 -13.18043 -13.04588 -12.99356 -12.70380 -12.67709 -12.24382 -12.06833 -11.95750 -11.71119 -11.55731 -10.98587 -10.54872 -10.52149 -10.41142 -10.05292 -9.75883 -8.13240 -6.25542 -0.77274 -0.35074 -0.23469 0.41647 1.01095 1.44716 1.48202 1.50353 1.56618 2.01388 2.45041 2.58389 2.89166 3.19429 3.45177 3.70561 3.99608 4.06527 4.24272 4.41513 4.48898 4.61585 4.76122 4.77769 4.87261 5.03517 5.20308 5.33476 5.45377 5.57216 5.80664 5.85805 6.07920 6.15749 6.45778 6.87251 7.44474 8.94626 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.011005 B = 0.004538 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.691347 B = 6168.622091 C = 7879.040644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.121 3.879 3 N -0.994 5.994 4 C 0.257 3.743 5 C -0.537 4.537 6 H 0.076 0.924 7 C 0.022 3.978 8 N -0.924 5.924 9 Si 0.944 3.056 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.261 1.261 13 S 2.801 3.199 14 O -0.998 6.998 15 O -1.009 7.009 16 N -1.111 6.111 17 C 0.193 3.807 18 C 0.030 3.970 19 N -0.466 5.466 20 C 0.052 3.948 21 C -0.198 4.198 22 Cl 0.020 6.980 23 S 0.219 5.781 24 H 0.049 0.951 25 H 0.089 0.911 26 H 0.046 0.954 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.019 0.981 30 H 0.028 0.972 31 H 0.265 0.735 32 H 0.423 0.577 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.505 -3.721 12.919 16.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.004 4.004 3 N -0.835 5.835 4 C 0.133 3.867 5 C -0.576 4.576 6 H 0.094 0.906 7 C -0.179 4.179 8 N -0.563 5.563 9 Si 0.770 3.230 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.185 1.185 13 S 2.809 3.191 14 O -0.982 6.982 15 O -0.992 6.992 16 N -0.873 5.873 17 C 0.064 3.936 18 C -0.247 4.247 19 N -0.182 5.182 20 C -0.102 4.102 21 C -0.347 4.347 22 Cl 0.048 6.952 23 S 0.472 5.528 24 H 0.068 0.932 25 H 0.108 0.892 26 H 0.065 0.935 27 H 0.101 0.899 28 H 0.103 0.897 29 H 0.037 0.963 30 H 0.046 0.954 31 H 0.074 0.926 32 H 0.258 0.742 33 H 0.113 0.887 34 H 0.125 0.875 35 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 8.448 -2.383 13.234 15.881 hybrid contribution 1.761 -1.047 -0.729 2.174 sum 10.209 -3.430 12.505 16.503 Atomic orbital electron populations 1.22191 0.95895 1.03141 1.01410 1.21250 0.94581 0.81220 1.03375 1.57625 1.79115 1.24249 1.22510 1.18807 0.96427 0.91366 0.80076 1.21794 1.07375 1.20898 1.07529 0.90632 1.25634 0.99716 0.94780 0.97743 1.70049 1.39798 1.26307 1.20163 0.85759 0.80463 0.77718 0.79065 1.20286 1.21454 1.18492 1.01173 0.72720 0.72890 0.72309 1.93552 1.69857 1.76285 1.58479 1.93544 1.86416 1.33248 1.86026 1.55729 1.23838 1.68365 1.39369 1.19878 0.79823 1.01367 0.92545 1.26936 1.01138 0.94239 1.02424 1.66489 1.03344 1.27459 1.20914 1.22292 0.95435 0.97766 0.94671 1.27174 0.98296 1.00805 1.08417 1.98381 1.37331 1.92229 1.67266 1.84209 1.07958 1.18829 1.41846 0.93160 0.89228 0.93527 0.89922 0.89742 0.96338 0.95446 0.92612 0.74215 0.88657 0.87474 0.77529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.93 10.24 71.98 0.74 -4.20 16 2 C 0.12 3.90 6.01 86.38 0.52 4.42 16 3 N -0.99 -38.47 2.84 -519.86 -1.48 -39.95 16 4 C 0.26 12.15 5.48 85.63 0.47 12.62 16 5 C -0.54 -26.05 7.94 25.60 0.20 -25.85 16 6 H 0.08 3.48 6.74 -2.91 -0.02 3.46 16 7 C 0.02 1.10 5.46 84.66 0.46 1.57 16 8 N -0.92 -51.20 13.29 21.45 0.28 -50.92 16 9 Si 0.94 40.62 29.54 68.60 2.03 42.64 16 10 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 12 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 13 S 2.80 103.84 6.11 -56.49 -0.35 103.50 16 14 O -1.00 -37.52 17.09 -128.00 -2.19 -39.70 16 15 O -1.01 -44.39 16.09 -128.00 -2.06 -46.45 16 16 N -1.11 -34.05 6.04 -190.80 -1.15 -35.20 16 17 C 0.19 6.29 6.73 85.63 0.58 6.87 16 18 C 0.03 0.85 6.78 88.52 0.60 1.45 16 19 N -0.47 -13.05 10.54 -191.36 -2.02 -15.07 16 20 C 0.05 1.15 11.32 83.67 0.95 2.10 16 21 C -0.20 -4.10 7.21 66.80 0.48 -3.62 16 22 Cl 0.02 0.33 29.31 -2.72 -0.08 0.25 16 23 S 0.22 4.99 23.18 -56.49 -1.31 3.68 16 24 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.05 1.44 8.11 -2.38 -0.02 1.42 16 27 H 0.08 2.67 8.05 -2.39 -0.02 2.65 16 28 H 0.08 2.35 7.64 -2.39 -0.02 2.33 16 29 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.03 1.45 6.83 -2.39 -0.02 1.44 16 31 H 0.26 14.01 8.31 -92.70 -0.77 13.24 16 32 H 0.42 10.73 8.65 -96.75 -0.84 9.89 16 33 H 0.10 3.23 7.72 -2.38 -0.02 3.21 16 34 H 0.11 3.93 5.58 -2.38 -0.01 3.91 16 35 H 0.21 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -62.39 342.64 -3.02 -65.40 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.31 Total: 16.46 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: 5.00 Total: -4.64 kcal Atomic # 7 Polarization: -136.78 SS G_CDS: -4.36 Total: -141.15 kcal Atomic # 8 Polarization: -81.91 SS G_CDS: -4.25 Total: -86.15 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.64 kcal Atomic # 16 Polarization: 108.83 SS G_CDS: -1.65 Total: 107.18 kcal Atomic # 17 Polarization: 0.33 SS G_CDS: -0.08 Total: 0.25 kcal Total: -62.39 -3.02 -65.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872567580.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.606 kcal (2) G-P(sol) polarization free energy of solvation -62.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds