Wall clock time and date at job start Tue Mar 31 2020 22:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47551 * 45.44643 * 3 2 1 5 5 N 1.46897 * 109.47364 * 174.86255 * 4 3 2 6 6 C 1.46900 * 110.99931 * 199.79363 * 5 4 3 7 7 C 1.50694 * 109.47408 * 66.04439 * 6 5 4 8 8 H 1.07995 * 120.00205 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99857 * 180.02562 * 7 6 5 10 10 N 1.31509 * 119.99956 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99739 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47370 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47035 * 119.99663 * 11 9 7 14 14 H 1.48501 * 109.47028 * 239.99513 * 11 9 7 15 15 C 1.46892 * 111.00122 * 75.83283 * 5 4 3 16 16 C 1.50698 * 109.47522 * 199.50666 * 15 5 4 17 17 N 1.31839 * 119.64783 * 264.48513 * 16 15 5 18 18 C 1.31841 * 121.78881 * 180.27455 * 17 16 15 19 19 C 1.38352 * 120.87505 * 359.97438 * 18 17 16 20 20 Br 1.89098 * 120.39971 * 180.02562 * 19 18 17 21 21 C 1.38623 * 119.19793 * 0.02562 * 19 18 17 22 22 C 1.38715 * 119.64607 * 84.75489 * 16 15 5 23 23 O 1.35911 * 120.46845 * 359.74850 * 22 16 15 24 24 H 1.09001 * 109.46829 * 285.44248 * 3 2 1 25 25 H 1.08996 * 109.46813 * 165.44893 * 3 2 1 26 26 H 1.09004 * 109.46753 * 54.86136 * 4 3 2 27 27 H 1.09003 * 109.46875 * 294.86578 * 4 3 2 28 28 H 1.09000 * 109.46737 * 186.04991 * 6 5 4 29 29 H 1.09003 * 109.46813 * 306.04129 * 6 5 4 30 30 H 0.97004 * 119.99718 * 179.97438 * 10 9 7 31 31 H 1.09002 * 109.46928 * 79.50786 * 15 5 4 32 32 H 1.09003 * 109.47527 * 319.51038 * 15 5 4 33 33 H 1.08000 * 119.56288 * 180.02562 * 18 17 16 34 34 H 1.07995 * 120.81597 * 180.02562 * 21 19 18 35 35 H 0.96697 * 114.00315 * 89.99726 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.0111 -1.0279 5 7 4.5822 -0.9234 -1.1162 6 6 5.0695 -1.5044 -2.3743 7 6 4.5897 -0.6685 -3.5328 8 1 3.9831 0.2066 -3.3525 9 6 4.9243 -1.0216 -4.8229 10 7 5.6626 -2.0876 -5.0424 11 14 4.3289 0.0141 -6.2590 12 1 3.5207 1.1504 -5.7483 13 1 5.4981 0.5363 -7.0109 14 1 3.4943 -0.8213 -7.1593 15 6 5.2189 -1.5652 0.0416 16 6 6.6326 -1.0620 0.1806 17 7 7.6256 -1.7544 -0.3417 18 6 8.8784 -1.3564 -0.2407 19 6 9.2001 -0.1860 0.4231 20 35 11.0016 0.3726 0.5594 21 6 8.1860 0.5723 0.9871 22 6 6.8758 0.1218 0.8615 23 8 5.8485 0.8315 1.3984 24 1 2.9714 -0.2728 0.9906 25 1 2.9708 0.9955 -0.2582 26 1 2.6819 -0.7911 -2.0021 27 1 2.8327 -2.0171 -0.7205 28 1 6.1593 -1.5242 -2.3672 29 1 4.6884 -2.5205 -2.4769 30 1 5.8977 -2.3362 -5.9501 31 1 5.2303 -2.6455 -0.1027 32 1 4.6574 -1.3251 0.9445 33 1 9.6638 -1.9515 -0.6826 34 1 8.4075 1.4905 1.5107 35 1 5.6340 0.5856 2.3086 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893308588.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:33 Heat of formation + Delta-G solvation = 29.813291 kcal Electronic energy + Delta-G solvation = -20925.752323 eV Core-core repulsion = 17584.750629 eV Total energy + Delta-G solvation = -3341.001695 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.032 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.56469 -37.46481 -37.21581 -36.07718 -33.31773 -32.67667 -31.24537 -30.68800 -29.73059 -27.28468 -25.31023 -23.57639 -23.04092 -22.08447 -20.15154 -18.38564 -17.33723 -16.97870 -16.64629 -16.21121 -15.52704 -15.03482 -14.60326 -14.58155 -13.93324 -13.61576 -13.46632 -13.32669 -13.00529 -12.77766 -12.33717 -12.04828 -11.99775 -11.89663 -11.54182 -11.31245 -11.20463 -11.03157 -10.69857 -10.61565 -10.44804 -10.30022 -9.91268 -9.57775 -9.37557 -9.15357 -8.63146 -8.45408 -7.45669 -6.03203 -4.04908 0.84108 1.11127 1.43298 2.97123 3.01824 3.30849 3.38880 3.42825 3.54377 3.97234 4.22161 4.40428 4.43776 4.67422 4.75471 5.09839 5.21801 5.29053 5.32024 5.36122 5.53061 5.61944 5.74285 5.83296 5.90133 6.07668 6.27401 6.39652 6.52206 7.18746 7.29129 7.49552 7.73686 7.79617 7.95506 8.03382 8.10027 8.44699 9.02397 9.59190 11.07161 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.010231 B = 0.003994 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.225529 B = 7008.494498 C = 9032.860025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.218 3.782 3 C -0.024 4.024 4 C 0.067 3.933 5 N -0.523 5.523 6 C 0.192 3.808 7 C -0.511 4.511 8 H 0.064 0.936 9 C 0.058 3.942 10 N -0.893 5.893 11 Si 0.893 3.107 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.285 1.285 15 C 0.099 3.901 16 C 0.150 3.850 17 N -0.442 5.442 18 C 0.128 3.872 19 C -0.138 4.138 20 Br -0.043 7.043 21 C -0.080 4.080 22 C 0.082 3.918 23 O -0.472 6.472 24 H 0.099 0.901 25 H 0.119 0.881 26 H 0.098 0.902 27 H 0.032 0.968 28 H 0.044 0.956 29 H -0.006 1.006 30 H 0.260 0.740 31 H 0.052 0.948 32 H 0.081 0.919 33 H 0.164 0.836 34 H 0.146 0.854 35 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.923 3.486 16.990 19.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.099 4.099 3 C -0.065 4.065 4 C -0.063 4.063 5 N -0.248 5.248 6 C 0.067 3.933 7 C -0.550 4.550 8 H 0.082 0.918 9 C -0.144 4.144 10 N -0.532 5.532 11 Si 0.721 3.279 12 H -0.196 1.196 13 H -0.211 1.211 14 H -0.211 1.211 15 C -0.030 4.030 16 C 0.010 3.990 17 N -0.152 5.152 18 C -0.031 4.031 19 C -0.220 4.220 20 Br 0.041 6.959 21 C -0.108 4.108 22 C 0.034 3.966 23 O -0.280 6.280 24 H 0.117 0.883 25 H 0.136 0.864 26 H 0.116 0.884 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.012 0.988 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.181 0.819 34 H 0.163 0.837 35 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 8.879 3.595 15.908 18.570 hybrid contribution -0.042 0.209 -0.150 0.261 sum 8.838 3.804 15.758 18.463 Atomic orbital electron populations 1.81164 1.13316 1.09565 1.09455 1.29418 0.95481 0.92501 0.92517 1.19408 0.80262 1.04622 1.02215 1.21895 0.89495 0.95240 0.99690 1.62012 1.03401 1.56576 1.02771 1.19855 0.96921 0.92975 0.83521 1.21175 1.32495 1.11155 0.90148 0.91760 1.24955 0.95276 0.95234 0.98913 1.69974 1.37302 1.25091 1.20872 0.86521 0.78541 0.80382 0.82482 1.19632 1.21051 1.21125 1.20897 0.88498 0.97421 0.96169 1.21851 0.96041 0.89693 0.91398 1.67776 0.99088 1.32707 1.15662 1.22842 0.94140 0.92397 0.93730 1.22823 0.91874 1.00133 1.07177 1.96707 1.10997 1.90537 1.97616 1.21810 0.91184 0.99535 0.98267 1.19072 0.86682 0.91654 0.99230 1.84958 1.49830 1.60822 1.32379 0.88329 0.86352 0.88353 0.94939 0.93754 0.98813 0.92989 0.92938 0.90088 0.81862 0.83652 0.75976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.62 18.54 42.15 0.78 -6.84 16 2 C 0.22 3.07 15.43 -20.76 -0.32 2.75 16 3 C -0.02 -0.29 5.75 -29.52 -0.17 -0.46 16 4 C 0.07 1.06 4.75 -3.83 -0.02 1.05 16 5 N -0.52 -9.62 4.35 -237.52 -1.03 -10.65 16 6 C 0.19 4.65 4.55 -4.98 -0.02 4.63 16 7 C -0.51 -13.66 8.23 -34.44 -0.28 -13.94 16 8 H 0.06 1.69 7.31 -52.49 -0.38 1.31 16 9 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 10 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 11 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 12 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 15 C 0.10 1.48 4.80 -4.98 -0.02 1.46 16 16 C 0.15 2.30 5.76 -82.41 -0.48 1.82 16 17 N -0.44 -7.40 9.52 -9.33 -0.09 -7.49 16 18 C 0.13 1.83 10.94 -17.51 -0.19 1.63 16 19 C -0.14 -1.74 6.24 -39.40 -0.25 -1.99 16 20 Br -0.04 -0.46 33.73 -68.01 -2.29 -2.75 16 21 C -0.08 -0.96 9.89 -39.11 -0.39 -1.34 16 22 C 0.08 1.05 6.70 -39.08 -0.26 0.79 16 23 O -0.47 -4.86 12.67 -19.46 -0.25 -5.10 16 24 H 0.10 0.87 6.90 -51.93 -0.36 0.51 16 25 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16 26 H 0.10 1.85 6.57 -51.93 -0.34 1.51 16 27 H 0.03 0.49 8.00 -51.93 -0.42 0.08 16 28 H 0.04 1.18 6.83 -51.93 -0.35 0.83 16 29 H -0.01 -0.16 8.12 -51.93 -0.42 -0.58 16 30 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.05 0.84 8.00 -51.93 -0.42 0.43 16 32 H 0.08 0.89 6.12 -51.93 -0.32 0.57 16 33 H 0.16 2.02 8.06 -52.49 -0.42 1.60 16 34 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.38 1.82 9.06 45.56 0.41 2.24 16 LS Contribution 330.93 15.07 4.99 4.99 Total: -1.00 -32.66 330.93 -7.67 -40.34 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: -3.00 Total: -1.47 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -2.50 Total: -2.09 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: 0.40 Total: -50.30 kcal Atomic # 8 Polarization: -4.86 SS G_CDS: -0.25 Total: -5.10 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 35 Polarization: -0.46 SS G_CDS: -2.29 Total: -2.75 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.66 -7.67 -40.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893308588.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.150 kcal (2) G-P(sol) polarization free energy of solvation -32.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds