Wall clock time and date at job start Tue Mar 31 2020 22:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47551 * 45.44643 * 3 2 1 5 5 N 1.46897 * 109.47364 * 174.86255 * 4 3 2 6 6 C 1.46900 * 110.99931 * 199.79363 * 5 4 3 7 7 C 1.50694 * 109.47408 * 66.04439 * 6 5 4 8 8 H 1.07995 * 120.00205 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99857 * 180.02562 * 7 6 5 10 10 N 1.31509 * 119.99956 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99739 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47370 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47035 * 119.99663 * 11 9 7 14 14 H 1.48501 * 109.47028 * 239.99513 * 11 9 7 15 15 C 1.46892 * 111.00122 * 75.83283 * 5 4 3 16 16 C 1.50698 * 109.47522 * 199.50666 * 15 5 4 17 17 N 1.31839 * 119.64783 * 264.48513 * 16 15 5 18 18 C 1.31841 * 121.78881 * 180.27455 * 17 16 15 19 19 C 1.38352 * 120.87505 * 359.97438 * 18 17 16 20 20 Br 1.89098 * 120.39971 * 180.02562 * 19 18 17 21 21 C 1.38623 * 119.19793 * 0.02562 * 19 18 17 22 22 C 1.38715 * 119.64607 * 84.75489 * 16 15 5 23 23 O 1.35911 * 120.46845 * 359.74850 * 22 16 15 24 24 H 1.09001 * 109.46829 * 285.44248 * 3 2 1 25 25 H 1.08996 * 109.46813 * 165.44893 * 3 2 1 26 26 H 1.09004 * 109.46753 * 54.86136 * 4 3 2 27 27 H 1.09003 * 109.46875 * 294.86578 * 4 3 2 28 28 H 1.09000 * 109.46737 * 186.04991 * 6 5 4 29 29 H 1.09003 * 109.46813 * 306.04129 * 6 5 4 30 30 H 0.97004 * 119.99718 * 179.97438 * 10 9 7 31 31 H 1.09002 * 109.46928 * 79.50786 * 15 5 4 32 32 H 1.09003 * 109.47527 * 319.51038 * 15 5 4 33 33 H 1.08000 * 119.56288 * 180.02562 * 18 17 16 34 34 H 1.07995 * 120.81597 * 180.02562 * 21 19 18 35 35 H 0.96697 * 114.00315 * 89.99726 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.0111 -1.0279 5 7 4.5822 -0.9234 -1.1162 6 6 5.0695 -1.5044 -2.3743 7 6 4.5897 -0.6685 -3.5328 8 1 3.9831 0.2066 -3.3525 9 6 4.9243 -1.0216 -4.8229 10 7 5.6626 -2.0876 -5.0424 11 14 4.3289 0.0141 -6.2590 12 1 3.5207 1.1504 -5.7483 13 1 5.4981 0.5363 -7.0109 14 1 3.4943 -0.8213 -7.1593 15 6 5.2189 -1.5652 0.0416 16 6 6.6326 -1.0620 0.1806 17 7 7.6256 -1.7544 -0.3417 18 6 8.8784 -1.3564 -0.2407 19 6 9.2001 -0.1860 0.4231 20 35 11.0016 0.3726 0.5594 21 6 8.1860 0.5723 0.9871 22 6 6.8758 0.1218 0.8615 23 8 5.8485 0.8315 1.3984 24 1 2.9714 -0.2728 0.9906 25 1 2.9708 0.9955 -0.2582 26 1 2.6819 -0.7911 -2.0021 27 1 2.8327 -2.0171 -0.7205 28 1 6.1593 -1.5242 -2.3672 29 1 4.6884 -2.5205 -2.4769 30 1 5.8977 -2.3362 -5.9501 31 1 5.2303 -2.6455 -0.1027 32 1 4.6574 -1.3251 0.9445 33 1 9.6638 -1.9515 -0.6826 34 1 8.4075 1.4905 1.5107 35 1 5.6340 0.5856 2.3086 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893308588.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:33 Heat of formation + Delta-G solvation = 5.833477 kcal Electronic energy + Delta-G solvation = -20926.792166 eV Core-core repulsion = 17584.750629 eV Total energy + Delta-G solvation = -3342.041537 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.032 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.58208 -38.79661 -38.09833 -37.34915 -34.78474 -34.25809 -32.39804 -31.68709 -30.99928 -28.87901 -26.67387 -24.88628 -24.41213 -23.27790 -21.58777 -19.25536 -18.63596 -18.31009 -17.99317 -17.50210 -16.60325 -16.58508 -16.13941 -15.73299 -15.16830 -15.01026 -14.56816 -14.44201 -14.16116 -14.01710 -13.83398 -13.54731 -13.29728 -13.23779 -12.93766 -12.67409 -12.56407 -12.28508 -12.24046 -12.18945 -11.85132 -11.52167 -11.33469 -11.17492 -10.58194 -10.52844 -10.32173 -9.64036 -8.99763 -8.14951 -6.22974 -0.18079 0.14893 0.47955 1.40350 1.42194 1.53817 1.81985 1.90691 2.40678 2.50859 3.04321 3.14492 3.18845 3.38424 3.70169 3.76409 3.81829 4.21162 4.21927 4.36446 4.40841 4.53260 4.68730 4.80774 4.83800 5.01041 5.09949 5.18051 5.38175 5.44260 5.45932 5.70912 6.12977 6.33486 6.62020 6.70441 6.85662 6.94796 7.01234 7.45735 8.95799 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.010231 B = 0.003994 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.225529 B = 7008.494498 C = 9032.860025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C 0.243 3.757 3 C -0.007 4.007 4 C 0.065 3.935 5 N -0.521 5.521 6 C 0.210 3.790 7 C -0.516 4.516 8 H 0.067 0.933 9 C 0.003 3.997 10 N -0.932 5.932 11 Si 0.956 3.044 12 H -0.262 1.262 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.100 3.900 16 C 0.119 3.881 17 N -0.482 5.482 18 C 0.107 3.893 19 C -0.135 4.135 20 Br -0.023 7.023 21 C -0.080 4.080 22 C 0.100 3.900 23 O -0.473 6.473 24 H 0.144 0.856 25 H 0.128 0.872 26 H 0.064 0.936 27 H 0.039 0.961 28 H 0.016 0.984 29 H -0.041 1.041 30 H 0.261 0.739 31 H 0.034 0.966 32 H 0.130 0.870 33 H 0.169 0.831 34 H 0.173 0.827 35 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.839 5.568 18.875 22.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.182 5.182 2 C -0.074 4.074 3 C -0.047 4.047 4 C -0.064 4.064 5 N -0.245 5.245 6 C 0.084 3.916 7 C -0.555 4.555 8 H 0.085 0.915 9 C -0.195 4.195 10 N -0.573 5.573 11 Si 0.782 3.218 12 H -0.186 1.186 13 H -0.209 1.209 14 H -0.209 1.209 15 C -0.028 4.028 16 C -0.020 4.020 17 N -0.193 5.193 18 C -0.052 4.052 19 C -0.217 4.217 20 Br 0.061 6.939 21 C -0.108 4.108 22 C 0.051 3.949 23 O -0.285 6.285 24 H 0.162 0.838 25 H 0.146 0.854 26 H 0.083 0.917 27 H 0.058 0.942 28 H 0.034 0.966 29 H -0.023 1.023 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.148 0.852 33 H 0.186 0.814 34 H 0.190 0.810 35 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 8.776 5.688 17.840 20.680 hybrid contribution 0.043 -0.433 -0.648 0.780 sum 8.819 5.255 17.192 20.024 Atomic orbital electron populations 1.81199 1.14824 1.11077 1.11084 1.29661 0.95593 0.91089 0.91051 1.19374 0.78609 1.03690 1.02996 1.21849 0.87970 0.97089 0.99513 1.61856 1.04779 1.56250 1.01660 1.19381 0.95023 0.91059 0.86116 1.21552 1.31688 1.11096 0.91135 0.91526 1.25798 0.95576 0.96353 1.01770 1.70106 1.38916 1.26901 1.21356 0.85528 0.78055 0.79008 0.79235 1.18575 1.20861 1.20880 1.21038 0.89285 0.96210 0.96277 1.21948 0.95654 0.91248 0.93162 1.67664 1.00348 1.34420 1.16874 1.22981 0.93706 0.93609 0.94865 1.22921 0.93198 0.99489 1.06123 1.96722 1.09516 1.90167 1.97491 1.22109 0.90614 1.00138 0.97903 1.18941 0.87566 0.90338 0.98096 1.84884 1.48805 1.60193 1.34601 0.83837 0.85427 0.91734 0.94230 0.96583 1.02313 0.93045 0.94774 0.85237 0.81381 0.80999 0.72634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -16.06 18.54 20.01 0.37 -15.68 16 2 C 0.24 6.25 15.43 89.44 1.38 7.63 16 3 C -0.01 -0.14 5.75 28.79 0.17 0.03 16 4 C 0.07 2.01 4.75 86.30 0.41 2.42 16 5 N -0.52 -18.84 4.35 -905.39 -3.93 -22.78 16 6 C 0.21 10.55 4.55 85.56 0.39 10.93 16 7 C -0.52 -28.08 8.23 25.60 0.21 -27.87 16 8 H 0.07 3.51 7.31 -2.91 -0.02 3.49 16 9 C 0.00 0.17 5.46 84.66 0.46 0.63 16 10 N -0.93 -56.10 13.29 21.45 0.28 -55.82 16 11 Si 0.96 44.37 29.54 68.60 2.03 46.39 16 12 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 13 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 14 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 15 C 0.10 2.87 4.80 85.56 0.41 3.28 16 16 C 0.12 3.54 5.76 42.67 0.25 3.79 16 17 N -0.48 -16.51 9.52 -183.43 -1.75 -18.25 16 18 C 0.11 3.09 10.94 84.72 0.93 4.02 16 19 C -0.14 -3.24 6.24 22.39 0.14 -3.10 16 20 Br -0.02 -0.46 33.73 -20.37 -0.69 -1.15 16 21 C -0.08 -1.71 9.89 22.57 0.22 -1.48 16 22 C 0.10 2.29 6.70 22.60 0.15 2.44 16 23 O -0.47 -7.59 12.67 -92.55 -1.17 -8.76 16 24 H 0.14 1.71 6.90 -2.39 -0.02 1.69 16 25 H 0.13 2.55 8.14 -2.39 -0.02 2.53 16 26 H 0.06 2.43 6.57 -2.38 -0.02 2.41 16 27 H 0.04 1.16 8.00 -2.39 -0.02 1.14 16 28 H 0.02 0.90 6.83 -2.39 -0.02 0.88 16 29 H -0.04 -2.28 8.12 -2.39 -0.02 -2.30 16 30 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 31 H 0.03 1.11 8.00 -2.39 -0.02 1.09 16 32 H 0.13 2.32 6.12 -2.39 -0.01 2.30 16 33 H 0.17 4.34 8.06 -2.91 -0.02 4.32 16 34 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 35 H 0.41 1.64 9.06 -74.06 -0.67 0.97 16 Total: -1.00 -74.13 330.93 0.73 -73.41 By element: Atomic # 1 Polarization: -0.55 SS G_CDS: 0.47 Total: -0.08 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: 5.11 Total: 2.72 kcal Atomic # 7 Polarization: -107.51 SS G_CDS: -5.03 Total: -112.53 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -1.17 Total: -8.76 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 35 Polarization: -0.46 SS G_CDS: -0.69 Total: -1.15 kcal Total: -74.13 0.73 -73.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893308588.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.239 kcal (2) G-P(sol) polarization free energy of solvation -74.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds