Wall clock time and date at job start Tue Mar 31 2020 22:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86799 * 119.99880 * 2 1 4 4 H 1.48497 * 109.46999 * 264.84401 * 3 2 1 5 5 H 1.48500 * 109.47192 * 24.84008 * 3 2 1 6 6 H 1.48503 * 109.47217 * 144.84147 * 3 2 1 7 7 C 1.40055 * 120.00137 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00006 * 348.54338 * 7 2 1 9 9 C 1.46375 * 119.99830 * 168.53703 * 7 2 1 10 10 O 1.21690 * 119.99814 * 348.91184 * 9 7 2 11 11 N 1.34772 * 119.99697 * 168.90900 * 9 7 2 12 12 C 1.46922 * 120.63344 * 354.66563 * 11 9 7 13 13 C 1.53194 * 108.77886 * 233.58780 * 12 11 9 14 14 C 1.53040 * 109.31029 * 305.36284 * 13 12 11 15 15 C 1.53045 * 109.53595 * 61.36670 * 14 13 12 16 16 C 1.46927 * 120.63052 * 174.64918 * 11 9 7 17 17 H 1.09002 * 109.58519 * 246.20473 * 16 11 9 18 18 C 1.50699 * 109.58557 * 6.61982 * 16 11 9 19 19 N 1.31798 * 119.10862 * 67.32419 * 18 16 11 20 20 C 1.32327 * 120.83089 * 179.76020 * 19 18 16 21 21 C 1.38690 * 119.08724 * 0.50248 * 20 19 18 22 22 Br 1.89104 * 120.80649 * 179.73047 * 21 20 19 23 23 C 1.38685 * 118.38033 * 359.75150 * 21 20 19 24 24 N 1.31797 * 119.11627 * 247.59220 * 18 16 11 25 25 H 0.96997 * 119.99885 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.58520 * 113.79634 * 12 11 9 27 27 H 1.09003 * 109.70166 * 353.44586 * 12 11 9 28 28 H 1.08998 * 109.49567 * 185.41705 * 13 12 11 29 29 H 1.08995 * 109.49423 * 65.31533 * 13 12 11 30 30 H 1.08996 * 109.46605 * 301.34292 * 14 13 12 31 31 H 1.09001 * 109.45867 * 181.38154 * 14 13 12 32 32 H 1.09005 * 109.49783 * 58.58073 * 15 14 13 33 33 H 1.09003 * 109.49782 * 178.67692 * 15 14 13 34 34 H 1.08001 * 120.45696 * 180.25948 * 20 19 18 35 35 H 1.08001 * 120.44833 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.5972 1.9835 -1.3944 5 1 1.3879 2.6817 0.5882 6 1 3.4795 1.4742 0.8062 7 6 2.0071 -1.2129 0.0005 8 1 1.4832 -2.1388 0.1867 9 6 3.4489 -1.2256 -0.2514 10 8 4.0044 -0.2221 -0.6579 11 7 4.1612 -2.3486 -0.0330 12 6 3.5290 -3.5314 0.5670 13 6 4.3496 -3.9643 1.7860 14 6 5.8062 -4.1751 1.3664 15 6 6.3824 -2.8591 0.8389 16 6 5.5848 -2.4136 -0.3907 17 1 5.7262 -3.1322 -1.1981 18 6 6.0570 -1.0527 -0.8335 19 7 6.1135 -0.0753 0.0488 20 6 6.5275 1.1317 -0.3017 21 6 6.8942 1.3624 -1.6192 22 35 7.4857 3.0705 -2.1750 23 6 6.8162 0.3101 -2.5192 24 7 6.3974 -0.8707 -2.0937 25 1 -0.4850 0.8400 -0.0004 26 1 3.5027 -4.3411 -0.1622 27 1 2.5133 -3.2870 0.8783 28 1 3.9470 -4.8961 2.1832 29 1 4.2999 -3.1902 2.5516 30 1 5.8528 -4.9318 0.5833 31 1 6.3875 -4.5070 2.2268 32 1 6.3135 -2.0953 1.6135 33 1 7.4268 -3.0041 0.5622 34 1 6.5753 1.9272 0.4272 35 1 7.0940 0.4524 -3.5531 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928945105.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:49 Heat of formation + Delta-G solvation = 25.888675 kcal Electronic energy + Delta-G solvation = -22370.691316 eV Core-core repulsion = 19029.519437 eV Total energy + Delta-G solvation = -3341.171879 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.032 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.81446 -38.77746 -36.35871 -33.38339 -33.24295 -32.78841 -32.04215 -31.08451 -28.77072 -26.88746 -24.83851 -24.31626 -23.54833 -21.83668 -20.63323 -19.07484 -17.25439 -17.07658 -16.49310 -15.92066 -15.09498 -14.69890 -14.55688 -14.31426 -13.95444 -13.88111 -13.29678 -13.24408 -13.14611 -12.44601 -12.28053 -12.13685 -11.88039 -11.23706 -11.05562 -10.98023 -10.80717 -10.62090 -10.51913 -10.42457 -10.38033 -10.26887 -10.15692 -9.48546 -9.09524 -8.95106 -8.71417 -7.71899 -7.57317 -6.71599 -4.93419 1.18102 1.61128 1.72246 3.38380 3.43362 3.65356 3.81437 4.06814 4.25021 4.38494 4.49841 4.67419 4.85477 5.07061 5.14346 5.22051 5.26637 5.40753 5.47470 5.57267 5.68565 5.85005 5.94074 6.04900 6.08880 6.14078 6.24638 6.41958 6.44715 6.66812 6.73011 6.93812 7.39294 7.47681 7.74567 8.20103 8.56892 8.61440 9.01069 9.88067 10.28214 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.012612 B = 0.005831 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.522688 B = 4800.683056 C = 6572.490292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.105 3.895 3 Si 0.961 3.039 4 H -0.281 1.281 5 H -0.323 1.323 6 H -0.257 1.257 7 C -0.526 4.526 8 H 0.092 0.908 9 C 0.556 3.444 10 O -0.598 6.598 11 N -0.622 5.622 12 C 0.123 3.877 13 C -0.136 4.136 14 C -0.113 4.113 15 C -0.124 4.124 16 C 0.215 3.785 17 H 0.083 0.917 18 C 0.391 3.609 19 N -0.464 5.464 20 C 0.192 3.808 21 C -0.224 4.224 22 Br -0.047 7.047 23 C 0.184 3.816 24 N -0.522 5.522 25 H 0.283 0.717 26 H 0.049 0.951 27 H 0.101 0.899 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.160 0.840 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.291 -1.164 -0.342 14.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.114 4.114 3 Si 0.793 3.207 4 H -0.207 1.207 5 H -0.255 1.255 6 H -0.182 1.182 7 C -0.561 4.561 8 H 0.110 0.890 9 C 0.368 3.632 10 O -0.489 6.489 11 N -0.357 5.357 12 C -0.001 4.001 13 C -0.174 4.174 14 C -0.151 4.151 15 C -0.163 4.163 16 C 0.109 3.891 17 H 0.101 0.899 18 C 0.128 3.872 19 N -0.178 5.178 20 C 0.021 3.979 21 C -0.309 4.309 22 Br 0.036 6.964 23 C 0.017 3.983 24 N -0.240 5.240 25 H 0.093 0.907 26 H 0.068 0.932 27 H 0.119 0.881 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.177 0.823 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 14.202 -0.975 -0.442 14.243 hybrid contribution 0.146 1.272 -0.280 1.310 sum 14.349 0.297 -0.721 14.370 Atomic orbital electron populations 1.69556 1.08001 1.30118 1.37472 1.25750 0.94674 1.02004 0.88965 0.85288 0.78244 0.77476 0.79664 1.20723 1.25451 1.18218 1.20704 0.89115 0.96012 1.50255 0.89043 1.18273 0.87939 0.80079 0.76938 1.90155 1.69801 1.32969 1.55957 1.47766 1.06313 1.15084 1.66503 1.21542 0.98200 0.87015 0.93298 1.21958 0.95223 1.01308 0.98958 1.21467 0.96463 0.96680 1.00473 1.21913 0.98038 0.98433 0.97912 1.19531 0.83791 0.89323 0.96444 0.89915 1.22425 0.85610 0.94353 0.84832 1.68196 1.10738 0.99887 1.38991 1.22886 0.87893 0.94815 0.92334 1.23386 1.13970 0.93998 0.99521 1.96611 1.88301 1.20623 1.90840 1.22880 0.89750 0.86769 0.98917 1.68185 1.14789 1.23968 1.17066 0.90709 0.93227 0.88085 0.91450 0.91365 0.92069 0.92012 0.90059 0.91853 0.82283 0.81950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.10 13.92 55.55 0.77 -22.33 16 2 C 0.10 2.95 5.52 -17.36 -0.10 2.85 16 3 Si 0.96 25.30 25.82 -169.99 -4.39 20.91 16 4 H -0.28 -7.78 7.11 56.52 0.40 -7.38 16 5 H -0.32 -8.20 7.11 56.52 0.40 -7.79 16 6 H -0.26 -6.99 6.73 56.52 0.38 -6.61 16 7 C -0.53 -14.35 9.21 -35.63 -0.33 -14.67 16 8 H 0.09 2.47 6.20 -52.49 -0.33 2.15 16 9 C 0.56 14.20 7.20 -12.99 -0.09 14.11 16 10 O -0.60 -16.08 7.53 5.20 0.04 -16.04 16 11 N -0.62 -12.93 2.97 -168.19 -0.50 -13.43 16 12 C 0.12 2.10 6.28 -3.71 -0.02 2.07 16 13 C -0.14 -1.87 6.08 -26.61 -0.16 -2.04 16 14 C -0.11 -1.41 5.88 -26.69 -0.16 -1.56 16 15 C -0.12 -1.84 5.27 -26.61 -0.14 -1.98 16 16 C 0.22 3.95 3.29 -68.76 -0.23 3.72 16 17 H 0.08 1.44 8.11 -51.93 -0.42 1.02 16 18 C 0.39 7.94 4.08 -157.19 -0.64 7.30 16 19 N -0.46 -9.67 7.75 -10.70 -0.08 -9.75 16 20 C 0.19 3.60 10.72 -17.17 -0.18 3.42 16 21 C -0.22 -3.85 6.27 -39.25 -0.25 -4.09 16 22 Br -0.05 -0.65 33.77 -68.01 -2.30 -2.95 16 23 C 0.18 3.20 11.09 -17.18 -0.19 3.01 16 24 N -0.52 -10.27 10.31 -10.71 -0.11 -10.38 16 25 H 0.28 7.37 8.29 -40.82 -0.34 7.03 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.10 1.90 5.52 -51.93 -0.29 1.61 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 1.35 7.72 -51.93 -0.40 0.95 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.16 2.63 8.06 -52.49 -0.42 2.20 16 35 H 0.16 2.28 8.06 -52.49 -0.42 1.85 16 LS Contribution 304.72 15.07 4.59 4.59 Total: -1.00 -31.57 304.72 -8.43 -40.01 By element: Atomic # 1 Polarization: 1.22 SS G_CDS: -3.97 Total: -2.76 kcal Atomic # 6 Polarization: 14.62 SS G_CDS: -2.49 Total: 12.13 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: 0.08 Total: -55.90 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: 0.04 Total: -16.04 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -4.39 Total: 20.91 kcal Atomic # 35 Polarization: -0.65 SS G_CDS: -2.30 Total: -2.95 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.57 -8.43 -40.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928945105.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.898 kcal (2) G-P(sol) polarization free energy of solvation -31.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds