Wall clock time and date at job start Tue Mar 31 2020 22:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86799 * 119.99880 * 2 1 4 4 H 1.48497 * 109.46999 * 264.84401 * 3 2 1 5 5 H 1.48500 * 109.47192 * 24.84008 * 3 2 1 6 6 H 1.48503 * 109.47217 * 144.84147 * 3 2 1 7 7 C 1.40055 * 120.00137 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00006 * 348.54338 * 7 2 1 9 9 C 1.46375 * 119.99830 * 168.53703 * 7 2 1 10 10 O 1.21690 * 119.99814 * 348.91184 * 9 7 2 11 11 N 1.34772 * 119.99697 * 168.90900 * 9 7 2 12 12 C 1.46922 * 120.63344 * 354.66563 * 11 9 7 13 13 C 1.53194 * 108.77886 * 233.58780 * 12 11 9 14 14 C 1.53040 * 109.31029 * 305.36284 * 13 12 11 15 15 C 1.53045 * 109.53595 * 61.36670 * 14 13 12 16 16 C 1.46927 * 120.63052 * 174.64918 * 11 9 7 17 17 H 1.09002 * 109.58519 * 246.20473 * 16 11 9 18 18 C 1.50699 * 109.58557 * 6.61982 * 16 11 9 19 19 N 1.31798 * 119.10862 * 67.32419 * 18 16 11 20 20 C 1.32327 * 120.83089 * 179.76020 * 19 18 16 21 21 C 1.38690 * 119.08724 * 0.50248 * 20 19 18 22 22 Br 1.89104 * 120.80649 * 179.73047 * 21 20 19 23 23 C 1.38685 * 118.38033 * 359.75150 * 21 20 19 24 24 N 1.31797 * 119.11627 * 247.59220 * 18 16 11 25 25 H 0.96997 * 119.99885 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.58520 * 113.79634 * 12 11 9 27 27 H 1.09003 * 109.70166 * 353.44586 * 12 11 9 28 28 H 1.08998 * 109.49567 * 185.41705 * 13 12 11 29 29 H 1.08995 * 109.49423 * 65.31533 * 13 12 11 30 30 H 1.08996 * 109.46605 * 301.34292 * 14 13 12 31 31 H 1.09001 * 109.45867 * 181.38154 * 14 13 12 32 32 H 1.09005 * 109.49783 * 58.58073 * 15 14 13 33 33 H 1.09003 * 109.49782 * 178.67692 * 15 14 13 34 34 H 1.08001 * 120.45696 * 180.25948 * 20 19 18 35 35 H 1.08001 * 120.44833 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.5972 1.9835 -1.3944 5 1 1.3879 2.6817 0.5882 6 1 3.4795 1.4742 0.8062 7 6 2.0071 -1.2129 0.0005 8 1 1.4832 -2.1388 0.1867 9 6 3.4489 -1.2256 -0.2514 10 8 4.0044 -0.2221 -0.6579 11 7 4.1612 -2.3486 -0.0330 12 6 3.5290 -3.5314 0.5670 13 6 4.3496 -3.9643 1.7860 14 6 5.8062 -4.1751 1.3664 15 6 6.3824 -2.8591 0.8389 16 6 5.5848 -2.4136 -0.3907 17 1 5.7262 -3.1322 -1.1981 18 6 6.0570 -1.0527 -0.8335 19 7 6.1135 -0.0753 0.0488 20 6 6.5275 1.1317 -0.3017 21 6 6.8942 1.3624 -1.6192 22 35 7.4857 3.0705 -2.1750 23 6 6.8162 0.3101 -2.5192 24 7 6.3974 -0.8707 -2.0937 25 1 -0.4850 0.8400 -0.0004 26 1 3.5027 -4.3411 -0.1622 27 1 2.5133 -3.2870 0.8783 28 1 3.9470 -4.8961 2.1832 29 1 4.2999 -3.1902 2.5516 30 1 5.8528 -4.9318 0.5833 31 1 6.3875 -4.5070 2.2268 32 1 6.3135 -2.0953 1.6135 33 1 7.4268 -3.0041 0.5622 34 1 6.5753 1.9272 0.4272 35 1 7.0940 0.4524 -3.5531 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928945105.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:49 Heat of formation + Delta-G solvation = 5.267067 kcal Electronic energy + Delta-G solvation = -22371.585536 eV Core-core repulsion = 19029.519437 eV Total energy + Delta-G solvation = -3342.066099 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.032 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.26867 -40.34701 -38.00646 -35.14875 -34.68069 -34.48689 -33.50616 -32.38998 -30.08349 -28.83703 -26.31228 -25.72101 -24.89232 -23.32105 -22.07513 -20.60215 -18.82956 -18.66954 -18.28706 -17.58166 -16.75121 -16.37618 -15.94545 -15.76284 -15.39347 -15.16318 -14.85674 -14.69464 -14.52056 -14.32348 -13.87566 -13.83963 -13.50743 -13.05020 -12.65022 -12.39272 -12.27989 -12.14072 -11.93430 -11.77210 -11.64413 -11.58961 -11.51311 -11.24606 -11.21574 -10.45238 -10.16004 -9.41736 -9.28897 -8.84303 -7.03259 -0.23490 0.19266 0.41066 1.26122 1.30865 1.53751 2.04980 2.22543 2.42182 2.82656 2.95794 3.29275 3.32515 3.52785 3.86575 3.89604 4.03016 4.07063 4.24706 4.32389 4.36331 4.58524 4.68184 4.88031 4.91866 4.97682 5.03818 5.21522 5.22844 5.24817 5.35316 5.55472 5.63873 5.91991 5.98610 6.18070 6.57841 7.08434 7.14697 7.93821 8.20458 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.012612 B = 0.005831 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.522688 B = 4800.683056 C = 6572.490292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.074 3.926 3 Si 1.009 2.991 4 H -0.303 1.303 5 H -0.310 1.310 6 H -0.274 1.274 7 C -0.544 4.544 8 H 0.085 0.915 9 C 0.554 3.446 10 O -0.616 6.616 11 N -0.621 5.621 12 C 0.115 3.885 13 C -0.128 4.128 14 C -0.106 4.106 15 C -0.115 4.115 16 C 0.209 3.791 17 H 0.095 0.905 18 C 0.372 3.628 19 N -0.489 5.489 20 C 0.174 3.826 21 C -0.224 4.224 22 Br -0.013 7.013 23 C 0.176 3.824 24 N -0.537 5.537 25 H 0.290 0.710 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.048 0.952 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.173 0.827 35 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.099 -2.014 -0.402 16.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.142 4.142 3 Si 0.843 3.157 4 H -0.231 1.231 5 H -0.241 1.241 6 H -0.200 1.200 7 C -0.580 4.580 8 H 0.103 0.897 9 C 0.362 3.638 10 O -0.508 6.508 11 N -0.355 5.355 12 C -0.007 4.007 13 C -0.166 4.166 14 C -0.143 4.143 15 C -0.154 4.154 16 C 0.104 3.896 17 H 0.113 0.887 18 C 0.108 3.892 19 N -0.204 5.204 20 C 0.004 3.996 21 C -0.309 4.309 22 Br 0.071 6.929 23 C 0.009 3.991 24 N -0.254 5.254 25 H 0.100 0.900 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.117 0.883 29 H 0.067 0.933 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.190 0.810 35 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 16.024 -1.841 -0.485 16.137 hybrid contribution -0.288 1.555 -0.336 1.617 sum 15.736 -0.287 -0.822 15.760 Atomic orbital electron populations 1.69570 1.08338 1.30875 1.39108 1.26179 0.95141 1.03536 0.89322 0.84588 0.76960 0.76381 0.77783 1.23073 1.24074 1.19952 1.20938 0.90631 0.95714 1.50759 0.89746 1.18160 0.87667 0.81283 0.76654 1.90132 1.70396 1.34073 1.56157 1.47718 1.07548 1.14686 1.65523 1.21757 0.97509 0.86180 0.95238 1.21902 0.96019 1.02015 0.96662 1.21475 0.95252 0.95574 1.02029 1.21871 0.98817 0.99067 0.95651 1.19877 0.82364 0.89023 0.98374 0.88749 1.22773 0.86233 0.95064 0.85132 1.68161 1.11603 1.00795 1.39803 1.23258 0.87995 0.94779 0.93610 1.23561 1.12707 0.95644 0.98944 1.96635 1.87803 1.18072 1.90436 1.23458 0.89023 0.86263 1.00325 1.68220 1.15152 1.25149 1.16895 0.90016 0.91034 0.90518 0.88264 0.93288 0.90147 0.89318 0.92241 0.89767 0.80953 0.78891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.35 13.92 21.84 0.30 -48.04 16 2 C 0.07 4.23 5.52 85.31 0.47 4.70 16 3 Si 1.01 53.29 25.82 68.60 1.77 55.06 16 4 H -0.30 -16.90 7.11 99.48 0.71 -16.19 16 5 H -0.31 -15.37 7.11 99.48 0.71 -14.67 16 6 H -0.27 -15.01 6.73 99.48 0.67 -14.34 16 7 C -0.54 -30.36 9.21 24.83 0.23 -30.14 16 8 H 0.08 4.71 6.20 -2.91 -0.02 4.69 16 9 C 0.55 28.60 7.20 86.36 0.62 29.23 16 10 O -0.62 -33.40 7.53 -4.32 -0.03 -33.43 16 11 N -0.62 -25.56 2.97 -804.25 -2.39 -27.95 16 12 C 0.12 3.81 6.28 86.36 0.54 4.36 16 13 C -0.13 -3.21 6.08 30.67 0.19 -3.03 16 14 C -0.11 -2.24 5.88 30.62 0.18 -2.06 16 15 C -0.12 -3.17 5.27 30.67 0.16 -3.01 16 16 C 0.21 7.40 3.29 44.23 0.15 7.54 16 17 H 0.09 3.10 8.11 -2.39 -0.02 3.08 16 18 C 0.37 14.88 4.08 138.75 0.57 15.45 16 19 N -0.49 -20.34 7.75 -187.77 -1.46 -21.79 16 20 C 0.17 6.45 10.72 84.73 0.91 7.35 16 21 C -0.22 -7.43 6.27 22.48 0.14 -7.29 16 22 Br -0.01 -0.33 33.77 -20.37 -0.69 -1.02 16 23 C 0.18 5.89 11.09 84.73 0.94 6.83 16 24 N -0.54 -20.60 10.31 -187.78 -1.94 -22.54 16 25 H 0.29 15.24 8.29 -92.71 -0.77 14.47 16 26 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.08 2.91 5.52 -2.39 -0.01 2.90 16 28 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.06 1.92 7.72 -2.38 -0.02 1.90 16 33 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.17 5.64 8.06 -2.91 -0.02 5.61 16 35 H 0.19 4.99 8.06 -2.91 -0.02 4.96 16 Total: -1.00 -68.94 304.72 1.75 -67.19 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: 1.08 Total: 2.59 kcal Atomic # 6 Polarization: 24.84 SS G_CDS: 5.09 Total: 29.93 kcal Atomic # 7 Polarization: -114.85 SS G_CDS: -5.48 Total: -120.33 kcal Atomic # 8 Polarization: -33.40 SS G_CDS: -0.03 Total: -33.43 kcal Atomic # 14 Polarization: 53.29 SS G_CDS: 1.77 Total: 55.06 kcal Atomic # 35 Polarization: -0.33 SS G_CDS: -0.69 Total: -1.02 kcal Total: -68.94 1.75 -67.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928945105.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.460 kcal (2) G-P(sol) polarization free energy of solvation -68.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds