Wall clock time and date at job start Tue Mar 31 2020 22:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99875 * 2 1 4 4 H 1.48506 * 109.47458 * 273.98136 * 3 2 1 5 5 H 1.48500 * 109.47402 * 33.97851 * 3 2 1 6 6 H 1.48500 * 109.47186 * 153.98158 * 3 2 1 7 7 C 1.38806 * 119.99988 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00246 * 188.84464 * 7 2 1 9 9 N 1.36934 * 120.00292 * 8.84322 * 7 2 1 10 10 C 1.51835 * 127.60929 * 14.12360 * 9 7 2 11 11 C 1.54393 * 102.86455 * 140.54838 * 10 9 7 12 12 H 1.08998 * 117.61774 * 243.60090 * 11 10 9 13 13 C 1.54286 * 106.22147 * 24.12147 * 11 10 9 14 14 H 1.09000 * 121.81787 * 221.53025 * 13 11 10 15 15 C 1.48146 * 127.84066 * 194.47117 * 9 7 2 16 16 C 1.52993 * 59.72336 * 113.48760 * 13 11 10 17 17 H 1.08998 * 117.44477 * 252.35041 * 16 13 11 18 18 N 1.46497 * 117.40813 * 107.66056 * 16 13 11 19 19 C 1.34777 * 119.99971 * 135.77345 * 18 16 13 20 20 O 1.21628 * 120.00235 * 0.02562 * 19 18 16 21 21 C 1.47266 * 120.00110 * 180.02562 * 19 18 16 22 22 C 1.36745 * 126.93210 * 359.68753 * 21 19 18 23 23 N 1.34736 * 108.40775 * 179.83699 * 22 21 19 24 24 H 0.97004 * 124.85819 * 180.13537 * 23 22 21 25 25 C 1.36464 * 110.29025 * 0.44166 * 23 22 21 26 26 Br 1.89105 * 125.57875 * 179.72924 * 25 23 22 27 27 C 1.34581 * 108.84032 * 359.73064 * 25 23 22 28 28 H 0.97007 * 119.99966 * 359.97438 * 1 2 3 29 29 H 1.08997 * 112.25961 * 21.87091 * 10 9 7 30 30 H 1.09000 * 110.21894 * 258.27750 * 10 9 7 31 31 H 1.09000 * 110.41245 * 100.79653 * 15 9 7 32 32 H 1.09005 * 110.40531 * 338.36077 * 15 9 7 33 33 H 0.96996 * 120.00380 * 315.77865 * 18 16 13 34 34 H 1.07994 * 125.80044 * 359.97438 * 22 21 19 35 35 H 1.08002 * 126.83253 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4135 2.0951 -1.3967 5 1 1.4922 2.6269 0.7825 6 1 3.5873 1.4174 0.6142 7 6 2.0102 -1.2021 -0.0005 8 1 3.0806 -1.2078 0.1433 9 7 1.3378 -2.3809 -0.1834 10 6 -0.0823 -2.5692 -0.6865 11 6 0.0376 -3.8094 -1.5982 12 1 -0.1715 -3.6782 -2.6598 13 6 1.2724 -4.5907 -1.1029 14 1 1.9831 -5.0414 -1.7956 15 6 1.8279 -3.7556 0.0710 16 6 -0.1278 -5.1909 -0.9618 17 1 -0.5570 -5.2348 0.0392 18 7 -0.4764 -6.3047 -1.8473 19 6 -1.1140 -7.3844 -1.3531 20 8 -1.4004 -7.4339 -0.1720 21 6 -1.4639 -8.5043 -2.2430 22 6 -1.2172 -8.5954 -3.5850 23 7 -1.6907 -9.7775 -4.0253 24 1 -1.6394 -10.0882 -4.9428 25 6 -2.2587 -10.4724 -2.9973 26 35 -3.0625 -12.1786 -3.1341 27 6 -2.1531 -9.7446 -1.8701 28 1 -0.4850 0.8401 0.0004 29 1 -0.4353 -1.7105 -1.2575 30 1 -0.7534 -2.7740 0.1476 31 1 1.4402 -4.1280 1.0192 32 1 2.9177 -3.7768 0.0702 33 1 -0.2482 -6.2653 -2.7892 34 1 -0.7245 -7.8479 -4.1889 35 1 -2.5060 -10.0188 -0.8869 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961169670.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:25 Heat of formation + Delta-G solvation = 79.448870 kcal Electronic energy + Delta-G solvation = -20176.992064 eV Core-core repulsion = 16838.142730 eV Total energy + Delta-G solvation = -3338.849334 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.032 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.56341 -39.43420 -37.96251 -34.32355 -32.74091 -32.15017 -31.45056 -30.14679 -28.53006 -27.10217 -25.65702 -23.57785 -21.52783 -20.94059 -20.43008 -19.63077 -19.17606 -18.72257 -16.84030 -16.40296 -16.06383 -15.27801 -14.67749 -14.46218 -14.21047 -14.07467 -13.68513 -13.35810 -13.14844 -12.70181 -12.60479 -12.14990 -11.52720 -11.42472 -11.41701 -10.98788 -10.96773 -10.81912 -10.41842 -10.16475 -10.12088 -9.87382 -9.66875 -9.29939 -9.17519 -8.76403 -8.71201 -8.27137 -6.85312 -5.76324 -3.09430 0.85125 1.38125 1.79633 2.75133 3.26272 3.40241 3.43954 3.45443 3.47553 4.37307 4.44912 4.49123 4.68728 4.96464 5.17679 5.28441 5.38239 5.41231 5.50777 5.59454 5.82960 5.92096 6.08237 6.17803 6.26597 6.28014 6.55622 6.71977 6.74800 6.86742 6.92602 7.34328 7.53924 7.66289 7.72198 8.15860 8.39330 9.09009 9.75417 10.52217 11.38569 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.057612 B = 0.001838 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.891101 B =15226.348101 C =15276.172245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.223 4.223 8 H 0.077 0.923 9 N -0.600 5.600 10 C 0.186 3.814 11 C -0.179 4.179 12 H 0.101 0.899 13 C -0.183 4.183 14 H 0.102 0.898 15 C 0.159 3.841 16 C 0.098 3.902 17 H 0.133 0.867 18 N -0.696 5.696 19 C 0.590 3.410 20 O -0.538 6.538 21 C -0.217 4.217 22 C 0.070 3.930 23 N -0.536 5.536 24 H 0.421 0.579 25 C -0.009 4.009 26 Br 0.005 6.995 27 C -0.084 4.084 28 H 0.254 0.746 29 H 0.094 0.906 30 H 0.030 0.970 31 H 0.027 0.973 32 H 0.051 0.949 33 H 0.395 0.605 34 H 0.183 0.817 35 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.825 -25.856 -12.947 29.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.351 4.351 8 H 0.095 0.905 9 N -0.324 5.324 10 C 0.062 3.938 11 C -0.200 4.200 12 H 0.119 0.881 13 C -0.205 4.205 14 H 0.120 0.880 15 C 0.032 3.968 16 C -0.007 4.007 17 H 0.150 0.850 18 N -0.344 5.344 19 C 0.378 3.622 20 O -0.415 6.415 21 C -0.228 4.228 22 C -0.068 4.068 23 N -0.133 5.133 24 H 0.259 0.741 25 C -0.196 4.196 26 Br 0.089 6.911 27 C -0.112 4.112 28 H 0.064 0.936 29 H 0.112 0.888 30 H 0.048 0.952 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.228 0.772 34 H 0.200 0.800 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.349 -26.318 -12.212 29.700 hybrid contribution 0.799 1.062 -1.156 1.761 sum -5.550 -25.256 -13.368 29.110 Atomic orbital electron populations 1.69885 1.05012 1.25295 1.56208 1.24859 0.95652 0.97870 1.02121 0.86096 0.78706 0.83433 0.77474 1.21654 1.21713 1.20566 1.19030 0.90755 0.82463 1.42872 0.90541 1.46070 1.11642 0.99729 1.75005 1.21733 0.86278 0.92214 0.93610 1.24599 1.02307 0.92539 1.00532 0.88116 1.24388 0.90460 1.02465 1.03140 0.87976 1.21056 0.96964 0.85742 0.93024 1.21863 0.98390 0.84789 0.95694 0.84970 1.45194 1.59406 1.17876 1.11889 1.17226 0.77141 0.80892 0.86965 1.90794 1.54148 1.80161 1.16384 1.20505 1.11505 0.97811 0.92997 1.22124 1.00695 0.88841 0.95124 1.41534 1.46111 1.15114 1.10582 0.74090 1.21786 1.11760 0.95204 0.90803 1.96791 1.79741 1.16086 1.98503 1.21949 1.00028 0.91883 0.97292 0.93610 0.88779 0.95190 0.95517 0.93029 0.77155 0.80042 0.82246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.86 10.79 55.49 0.60 -26.26 16 2 C -0.01 -0.23 5.43 -17.43 -0.09 -0.33 16 3 Si 0.91 21.96 29.56 -169.99 -5.03 16.93 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.22 -6.21 10.37 -15.06 -0.16 -6.37 16 8 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 9 N -0.60 -15.38 3.45 -165.69 -0.57 -15.96 16 10 C 0.19 4.45 5.91 -0.29 0.00 4.44 16 11 C -0.18 -3.30 6.96 -89.22 -0.62 -3.92 16 12 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 13 C -0.18 -3.23 7.06 -89.22 -0.63 -3.86 16 14 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 15 C 0.16 3.37 7.05 -2.40 -0.02 3.35 16 16 C 0.10 1.66 5.97 -67.94 -0.41 1.25 16 17 H 0.13 2.56 7.40 -51.93 -0.38 2.17 16 18 N -0.70 -9.24 5.55 -54.94 -0.31 -9.54 16 19 C 0.59 8.68 7.81 -12.59 -0.10 8.58 16 20 O -0.54 -10.24 16.54 5.25 0.09 -10.15 16 21 C -0.22 -2.44 6.29 -103.35 -0.65 -3.09 16 22 C 0.07 0.51 11.40 -16.82 -0.19 0.31 16 23 N -0.54 -3.37 5.91 -11.27 -0.07 -3.43 16 24 H 0.42 1.32 8.96 -40.82 -0.37 0.96 16 25 C -0.01 -0.07 7.61 -16.78 -0.13 -0.20 16 26 Br 0.01 0.04 34.08 -68.01 -2.32 -2.28 16 27 C -0.08 -0.92 10.91 -37.46 -0.41 -1.33 16 28 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.09 2.48 6.57 -51.93 -0.34 2.13 16 30 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.39 3.84 7.77 -40.82 -0.32 3.52 16 34 H 0.18 0.66 7.45 -52.49 -0.39 0.27 16 35 H 0.16 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 323.05 15.07 4.87 4.87 Total: -1.00 -33.91 323.05 -10.02 -43.92 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -3.88 Total: 3.06 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -3.40 Total: -1.16 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: -0.34 Total: -55.19 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Atomic # 35 Polarization: 0.04 SS G_CDS: -2.32 Total: -2.28 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.91 -10.02 -43.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961169670.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.373 kcal (2) G-P(sol) polarization free energy of solvation -33.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds