Wall clock time and date at job start Tue Mar 31 2020 22:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99875 * 2 1 4 4 H 1.48506 * 109.47458 * 273.98136 * 3 2 1 5 5 H 1.48500 * 109.47402 * 33.97851 * 3 2 1 6 6 H 1.48500 * 109.47186 * 153.98158 * 3 2 1 7 7 C 1.38806 * 119.99988 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00246 * 188.84464 * 7 2 1 9 9 N 1.36934 * 120.00292 * 8.84322 * 7 2 1 10 10 C 1.51835 * 127.60929 * 14.12360 * 9 7 2 11 11 C 1.54393 * 102.86455 * 140.54838 * 10 9 7 12 12 H 1.08998 * 117.61774 * 243.60090 * 11 10 9 13 13 C 1.54286 * 106.22147 * 24.12147 * 11 10 9 14 14 H 1.09000 * 121.81787 * 221.53025 * 13 11 10 15 15 C 1.48146 * 127.84066 * 194.47117 * 9 7 2 16 16 C 1.52993 * 59.72336 * 113.48760 * 13 11 10 17 17 H 1.08998 * 117.44477 * 252.35041 * 16 13 11 18 18 N 1.46497 * 117.40813 * 107.66056 * 16 13 11 19 19 C 1.34777 * 119.99971 * 135.77345 * 18 16 13 20 20 O 1.21628 * 120.00235 * 0.02562 * 19 18 16 21 21 C 1.47266 * 120.00110 * 180.02562 * 19 18 16 22 22 C 1.36745 * 126.93210 * 359.68753 * 21 19 18 23 23 N 1.34736 * 108.40775 * 179.83699 * 22 21 19 24 24 H 0.97004 * 124.85819 * 180.13537 * 23 22 21 25 25 C 1.36464 * 110.29025 * 0.44166 * 23 22 21 26 26 Br 1.89105 * 125.57875 * 179.72924 * 25 23 22 27 27 C 1.34581 * 108.84032 * 359.73064 * 25 23 22 28 28 H 0.97007 * 119.99966 * 359.97438 * 1 2 3 29 29 H 1.08997 * 112.25961 * 21.87091 * 10 9 7 30 30 H 1.09000 * 110.21894 * 258.27750 * 10 9 7 31 31 H 1.09000 * 110.41245 * 100.79653 * 15 9 7 32 32 H 1.09005 * 110.40531 * 338.36077 * 15 9 7 33 33 H 0.96996 * 120.00380 * 315.77865 * 18 16 13 34 34 H 1.07994 * 125.80044 * 359.97438 * 22 21 19 35 35 H 1.08002 * 126.83253 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4135 2.0951 -1.3967 5 1 1.4922 2.6269 0.7825 6 1 3.5873 1.4174 0.6142 7 6 2.0102 -1.2021 -0.0005 8 1 3.0806 -1.2078 0.1433 9 7 1.3378 -2.3809 -0.1834 10 6 -0.0823 -2.5692 -0.6865 11 6 0.0376 -3.8094 -1.5982 12 1 -0.1715 -3.6782 -2.6598 13 6 1.2724 -4.5907 -1.1029 14 1 1.9831 -5.0414 -1.7956 15 6 1.8279 -3.7556 0.0710 16 6 -0.1278 -5.1909 -0.9618 17 1 -0.5570 -5.2348 0.0392 18 7 -0.4764 -6.3047 -1.8473 19 6 -1.1140 -7.3844 -1.3531 20 8 -1.4004 -7.4339 -0.1720 21 6 -1.4639 -8.5043 -2.2430 22 6 -1.2172 -8.5954 -3.5850 23 7 -1.6907 -9.7775 -4.0253 24 1 -1.6394 -10.0882 -4.9428 25 6 -2.2587 -10.4724 -2.9973 26 35 -3.0625 -12.1786 -3.1341 27 6 -2.1531 -9.7446 -1.8701 28 1 -0.4850 0.8401 0.0004 29 1 -0.4353 -1.7105 -1.2575 30 1 -0.7534 -2.7740 0.1476 31 1 1.4402 -4.1280 1.0192 32 1 2.9177 -3.7768 0.0702 33 1 -0.2482 -6.2653 -2.7892 34 1 -0.7245 -7.8479 -4.1889 35 1 -2.5060 -10.0188 -0.8869 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961169670.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:24 Heat of formation + Delta-G solvation = 55.712589 kcal Electronic energy + Delta-G solvation = -20178.021347 eV Core-core repulsion = 16838.142730 eV Total energy + Delta-G solvation = -3339.878617 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.032 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.26277 -40.76723 -39.38335 -35.93296 -34.35135 -32.87340 -32.42638 -31.70949 -29.32380 -28.86154 -27.51762 -24.72309 -23.06847 -21.97945 -21.63429 -20.80549 -20.62138 -19.45992 -18.81352 -17.48564 -17.36582 -16.67235 -16.12975 -15.60933 -15.23961 -15.15978 -15.00092 -14.74337 -14.56829 -14.15963 -13.67921 -13.40908 -13.23128 -13.19610 -12.87886 -12.69418 -12.13021 -12.03593 -11.99542 -11.80493 -11.62296 -11.57049 -11.11688 -10.82815 -10.66707 -10.08458 -9.65418 -9.35645 -8.90716 -7.88308 -5.23863 0.21625 0.65198 1.00971 1.48573 1.50097 1.59536 1.96648 2.35740 2.38221 2.51536 2.95768 3.32383 3.55919 3.82768 3.87729 3.96658 4.00864 4.17968 4.26472 4.40723 4.48562 4.58084 4.79849 4.88862 4.97482 5.01837 5.31319 5.34401 5.44543 5.47381 5.53970 5.59343 5.68100 6.13714 6.31166 6.64491 6.98115 7.32369 7.67603 8.47672 9.26118 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.057612 B = 0.001838 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.891101 B =15226.348101 C =15276.172245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.066 4.066 3 Si 0.981 3.019 4 H -0.284 1.284 5 H -0.297 1.297 6 H -0.268 1.268 7 C -0.236 4.236 8 H 0.082 0.918 9 N -0.624 5.624 10 C 0.187 3.813 11 C -0.174 4.174 12 H 0.130 0.870 13 C -0.164 4.164 14 H 0.139 0.861 15 C 0.150 3.850 16 C 0.116 3.884 17 H 0.101 0.899 18 N -0.677 5.677 19 C 0.590 3.410 20 O -0.594 6.594 21 C -0.258 4.258 22 C 0.111 3.889 23 N -0.518 5.518 24 H 0.441 0.559 25 C -0.006 4.006 26 Br 0.018 6.982 27 C -0.112 4.112 28 H 0.249 0.751 29 H 0.065 0.935 30 H 0.000 1.000 31 H 0.015 0.985 32 H 0.064 0.936 33 H 0.418 0.582 34 H 0.228 0.772 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.530 -27.214 -16.086 31.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.260 4.260 3 Si 0.809 3.191 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.365 4.365 8 H 0.100 0.900 9 N -0.349 5.349 10 C 0.062 3.938 11 C -0.195 4.195 12 H 0.148 0.852 13 C -0.185 4.185 14 H 0.157 0.843 15 C 0.024 3.976 16 C 0.009 3.991 17 H 0.119 0.881 18 N -0.327 5.327 19 C 0.380 3.620 20 O -0.476 6.476 21 C -0.269 4.269 22 C -0.029 4.029 23 N -0.117 5.117 24 H 0.283 0.717 25 C -0.194 4.194 26 Br 0.101 6.899 27 C -0.140 4.140 28 H 0.058 0.942 29 H 0.083 0.917 30 H 0.018 0.982 31 H 0.032 0.968 32 H 0.082 0.918 33 H 0.256 0.744 34 H 0.244 0.756 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.034 -27.737 -15.420 32.132 hybrid contribution 0.355 1.372 -0.148 1.425 sum -4.679 -26.365 -15.569 30.974 Atomic orbital electron populations 1.70090 1.06515 1.25630 1.57596 1.25723 0.96522 1.01240 1.02474 0.85022 0.77735 0.78891 0.77410 1.21083 1.22345 1.19234 1.19425 0.91316 0.83641 1.42109 0.90004 1.46401 1.12183 1.00823 1.75493 1.21481 0.85320 0.93748 0.93241 1.24285 1.03577 0.90870 1.00776 0.85176 1.24293 0.90890 1.01628 1.01715 0.84309 1.21201 0.97798 0.84440 0.94122 1.21359 0.97665 0.85107 0.94974 0.88106 1.44890 1.58952 1.16333 1.12487 1.17734 0.76018 0.81510 0.86688 1.90768 1.56465 1.81286 1.19036 1.20198 1.14921 0.97256 0.94486 1.22662 0.97635 0.88970 0.93627 1.41573 1.44527 1.14450 1.11120 0.71743 1.21755 1.11317 0.95576 0.90733 1.96812 1.79566 1.15043 1.98436 1.21953 1.01378 0.92890 0.97745 0.94176 0.91678 0.98238 0.96752 0.91791 0.74448 0.75559 0.83837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.46 10.79 21.65 0.23 -57.23 16 2 C -0.07 -3.78 5.43 84.86 0.46 -3.32 16 3 Si 0.98 45.58 29.56 68.60 2.03 47.61 16 4 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 5 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.24 -13.29 10.37 84.03 0.87 -12.42 16 8 H 0.08 4.39 7.84 -2.91 -0.02 4.37 16 9 N -0.62 -32.50 3.45 -678.13 -2.34 -34.85 16 10 C 0.19 9.21 5.91 85.79 0.51 9.72 16 11 C -0.17 -6.24 6.96 -9.88 -0.07 -6.31 16 12 H 0.13 3.93 8.14 -2.39 -0.02 3.91 16 13 C -0.16 -5.45 7.06 -9.89 -0.07 -5.52 16 14 H 0.14 3.68 8.14 -2.39 -0.02 3.66 16 15 C 0.15 6.33 7.05 86.54 0.61 6.94 16 16 C 0.12 3.81 5.97 44.99 0.27 4.08 16 17 H 0.10 4.05 7.40 -2.39 -0.02 4.04 16 18 N -0.68 -16.40 5.55 -445.97 -2.48 -18.87 16 19 C 0.59 16.92 7.81 86.62 0.68 17.59 16 20 O -0.59 -23.47 16.54 -4.12 -0.07 -23.53 16 21 C -0.26 -5.34 6.29 -19.04 -0.12 -5.46 16 22 C 0.11 1.12 11.40 83.90 0.96 2.08 16 23 N -0.52 -4.49 5.91 -189.56 -1.12 -5.61 16 24 H 0.44 0.69 8.96 -92.71 -0.83 -0.14 16 25 C -0.01 -0.10 7.61 83.13 0.63 0.54 16 26 Br 0.02 0.23 34.08 -20.37 -0.69 -0.46 16 27 C -0.11 -2.39 10.91 23.65 0.26 -2.13 16 28 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16 29 H 0.06 3.57 6.57 -2.39 -0.02 3.55 16 30 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 33 H 0.42 6.24 7.77 -92.71 -0.72 5.52 16 34 H 0.23 0.13 7.45 -2.91 -0.02 0.11 16 35 H 0.14 3.37 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -78.49 323.05 0.15 -78.34 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -0.40 Total: 8.82 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: 4.98 Total: 5.79 kcal Atomic # 7 Polarization: -110.85 SS G_CDS: -5.70 Total: -116.55 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.07 Total: -23.53 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Atomic # 35 Polarization: 0.23 SS G_CDS: -0.69 Total: -0.46 kcal Total: -78.49 0.15 -78.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961169670.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.054 kcal (2) G-P(sol) polarization free energy of solvation -78.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds