Wall clock time and date at job start Tue Mar 31 2020 22:21:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31621 * 1
3 3 Si 1.86795 * 120.00152 * 2 1
4 4 H 1.48494 * 109.47071 * 180.27747 * 3 2 1
5 5 H 1.48506 * 109.47211 * 300.27889 * 3 2 1
6 6 H 1.48493 * 109.47327 * 60.27756 * 3 2 1
7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3
8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1
9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1
10 10 C 1.47869 * 126.94967 * 359.69323 * 9 7 2
11 11 C 1.55993 * 105.11721 * 181.87325 * 10 9 7
12 12 H 1.08998 * 116.81219 * 159.41182 * 11 10 9
13 13 C 1.57090 * 99.47471 * 33.16079 * 11 10 9
14 14 C 1.49296 * 126.94212 * 180.02562 * 9 7 2
15 15 H 1.08999 * 116.14849 * 15.85051 * 14 9 7
16 16 C 1.56016 * 104.09351 * 246.70019 * 14 9 7
17 17 N 1.47867 * 105.10528 * 288.76921 * 16 14 9
18 18 C 1.34771 * 126.94299 * 182.02708 * 17 16 14
19 19 O 1.21699 * 119.99968 * 179.97438 * 18 17 16
20 20 C 1.46677 * 120.00239 * 359.96698 * 18 17 16
21 21 C 1.37879 * 126.22661 * 179.68984 * 20 18 17
22 22 C 1.39874 * 107.09350 * 179.85403 * 21 20 18
23 23 Br 1.89099 * 126.07772 * 180.16477 * 22 21 20
24 24 C 1.35509 * 107.85154 * 0.41647 * 22 21 20
25 25 N 1.35603 * 108.85589 * 359.74322 * 24 22 21
26 26 H 0.96994 * 125.67336 * 179.97438 * 25 24 22
27 27 H 0.97000 * 120.00043 * 359.72461 * 1 2 3
28 28 H 1.09007 * 110.30943 * 300.90657 * 10 9 7
29 29 H 1.09001 * 110.31495 * 63.08692 * 10 9 7
30 30 H 1.09000 * 112.36875 * 191.50974 * 13 11 10
31 31 H 1.09006 * 112.36822 * 64.07324 * 13 11 10
32 32 H 1.09000 * 110.31442 * 47.67734 * 16 14 9
33 33 H 1.09005 * 110.31049 * 169.75784 * 16 14 9
34 34 H 1.08002 * 126.45614 * 0.02562 * 21 20 18
35 35 H 1.07999 * 125.57024 * 179.76184 * 24 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 3.7101 1.3463 -0.0068
5 1 1.8864 2.3994 -1.2091
6 1 1.8966 2.3934 1.2158
7 6 2.0102 -1.2022 -0.0059
8 1 3.0902 -1.2022 -0.0104
9 7 1.3254 -2.3881 -0.0059
10 6 -0.1424 -2.5669 0.0063
11 6 -0.3638 -4.1104 0.0496
12 1 -1.3333 -4.4582 0.4061
13 6 0.8877 -4.5274 0.9027
14 6 1.9100 -3.7618 -0.0112
15 1 2.9652 -3.8358 0.2518
16 6 1.5027 -4.3426 -1.4007
17 7 0.0463 -4.5806 -1.3069
18 6 -0.7498 -5.1146 -2.2542
19 8 -1.9398 -5.2543 -2.0410
20 6 -0.1822 -5.5272 -3.5422
21 6 -0.8730 -6.0902 -4.5943
22 6 0.0526 -6.3213 -5.6172
23 35 -0.3235 -7.0764 -7.3096
24 6 1.2678 -5.9130 -5.1779
25 7 1.1382 -5.4285 -3.9180
26 1 1.8566 -5.0720 -3.3725
27 1 -0.4850 0.8400 0.0040
28 1 -0.5736 -2.0959 0.8897
29 1 -0.5820 -2.1487 -0.8992
30 1 1.0527 -5.6048 0.8978
31 1 0.8531 -4.1237 1.9146
32 1 1.7185 -3.6224 -2.1899
33 1 2.0293 -5.2783 -1.5888
34 1 -1.9303 -6.3087 -4.6241
35 1 2.1888 -5.9648 -5.7396
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001032506266.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:21:29
Heat of formation + Delta-G solvation = 80.389700 kcal
Electronic energy + Delta-G solvation = -21589.359124 eV
Core-core repulsion = 18250.550587 eV
Total energy + Delta-G solvation = -3338.808537 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 339.032 amu
Computer time = 1.54 seconds
Orbital eigenvalues (eV)
-41.48553 -39.89108 -37.71534 -33.86851 -32.47278 -31.56407 -30.14095 -29.56387
-28.76475 -28.22011 -25.42938 -24.15344 -22.33839 -20.89739 -20.15658 -19.90921
-19.41550 -17.87781 -16.72797 -16.14026 -15.74721 -15.29668 -14.70841 -14.18597
-14.04754 -13.99313 -13.40224 -13.18710 -12.88227 -12.77618 -12.30595 -12.08063
-11.86328 -11.46297 -11.17315 -11.14472 -10.98847 -10.92810 -10.74974 -10.39042
-10.28952 -10.15877 -9.82622 -9.75682 -8.92580 -8.82932 -8.43085 -8.12421
-7.06770 -5.88020 -3.23894 1.46383 1.69751 2.34245 2.97966 3.28508
3.30753 3.34771 3.38538 3.54150 4.30772 4.62670 4.82141 4.93147
4.96687 5.11171 5.20970 5.38452 5.41027 5.53099 5.59149 5.65390
5.82552 5.85600 6.07576 6.24292 6.25569 6.39578 6.41793 6.48790
6.65127 7.16264 7.30194 7.37024 7.61167 7.85428 7.97814 8.38367
8.98089 9.59149 10.26527 11.23916
Molecular weight = 339.03amu
Principal moments of inertia in cm(-1)
A = 0.019191 B = 0.003042 C = 0.002842
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1458.664047 B = 9201.766210 C = 9849.300297
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.916 5.916
2 C -0.003 4.003
3 Si 0.914 3.086
4 H -0.279 1.279
5 H -0.290 1.290
6 H -0.289 1.289
7 C -0.238 4.238
8 H 0.082 0.918
9 N -0.596 5.596
10 C 0.173 3.827
11 C 0.101 3.899
12 H 0.118 0.882
13 C -0.151 4.151
14 C 0.145 3.855
15 H 0.110 0.890
16 C 0.068 3.932
17 N -0.605 5.605
18 C 0.600 3.400
19 O -0.537 6.537
20 C -0.025 4.025
21 C -0.089 4.089
22 C -0.181 4.181
23 Br -0.035 7.035
24 C 0.053 3.947
25 N -0.529 5.529
26 H 0.426 0.574
27 H 0.255 0.745
28 H 0.059 0.941
29 H 0.050 0.950
30 H 0.066 0.934
31 H 0.087 0.913
32 H 0.072 0.928
33 H 0.052 0.948
34 H 0.155 0.845
35 H 0.179 0.821
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.079 -15.003 -9.870 18.416
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.562 5.562
2 C -0.200 4.200
3 Si 0.744 3.256
4 H -0.204 1.204
5 H -0.217 1.217
6 H -0.216 1.216
7 C -0.366 4.366
8 H 0.100 0.900
9 N -0.320 5.320
10 C 0.048 3.952
11 C -0.001 4.001
12 H 0.136 0.864
13 C -0.191 4.191
14 C 0.035 3.965
15 H 0.127 0.873
16 C -0.058 4.058
17 N -0.338 5.338
18 C 0.389 3.611
19 O -0.415 6.415
20 C -0.139 4.139
21 C -0.116 4.116
22 C -0.267 4.267
23 Br 0.049 6.951
24 C -0.088 4.088
25 N -0.129 5.129
26 H 0.270 0.730
27 H 0.065 0.935
28 H 0.077 0.923
29 H 0.068 0.932
30 H 0.085 0.915
31 H 0.106 0.894
32 H 0.090 0.910
33 H 0.070 0.930
34 H 0.173 0.827
35 H 0.196 0.804
Dipole moment (debyes) X Y Z Total
from point charges 3.303 -14.986 -10.282 18.472
hybrid contribution 0.912 1.303 0.351 1.629
sum 4.215 -13.683 -9.931 17.424
Atomic orbital electron populations
1.69921 1.04990 1.25444 1.55851 1.24844 0.95696 0.97835 1.01640
0.86036 0.78649 0.83578 0.77361 1.20431 1.21695 1.21598 1.19076
0.90424 0.81957 1.45134 0.90030 1.45269 1.01362 0.99200 1.86146
1.21949 0.84637 0.87018 1.01628 1.24400 0.98063 0.97754 0.79876
0.86417 1.24181 0.96512 0.98981 0.99425 1.23133 0.96807 0.86517
0.90026 0.87273 1.23510 0.80617 0.98212 1.03427 1.49113 1.08996
1.60010 1.15705 1.16568 0.85496 0.77669 0.81363 1.90823 1.14216
1.57021 1.79458 1.20565 0.83717 1.12162 0.97453 1.21116 0.99570
1.00635 0.90272 1.20933 0.95880 1.15008 0.94840 1.96575 1.95481
1.82798 1.20244 1.21868 0.98982 1.01631 0.86274 1.42753 1.09353
1.47216 1.13586 0.73046 0.93456 0.92333 0.93235 0.91515 0.89399
0.91000 0.93017 0.82703 0.80416
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 54.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -25.96 10.56 55.49 0.59 -25.37 16
2 C 0.00 -0.07 5.49 -17.43 -0.10 -0.17 16
3 Si 0.91 21.05 29.55 -169.99 -5.02 16.03 16
4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16
5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16
6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16
7 C -0.24 -6.05 10.38 -15.06 -0.16 -6.20 16
8 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16
9 N -0.60 -13.51 3.02 -156.37 -0.47 -13.98 16
10 C 0.17 3.97 4.77 -1.69 -0.01 3.96 16
11 C 0.10 1.86 5.24 -62.55 -0.33 1.53 16
12 H 0.12 2.11 8.06 -51.93 -0.42 1.69 16
13 C -0.15 -2.37 6.80 -22.32 -0.15 -2.52 16
14 C 0.14 2.44 5.53 -62.57 -0.35 2.10 16
15 H 0.11 1.61 8.14 -51.93 -0.42 1.19 16
16 C 0.07 1.04 4.52 -1.68 -0.01 1.03 16
17 N -0.61 -10.66 2.96 -158.30 -0.47 -11.12 16
18 C 0.60 11.10 7.87 -12.86 -0.10 11.00 16
19 O -0.54 -11.50 17.23 5.19 0.09 -11.41 16
20 C -0.02 -0.38 6.91 -81.98 -0.57 -0.95 16
21 C -0.09 -1.31 10.63 -39.10 -0.42 -1.72 16
22 C -0.18 -2.27 6.53 -39.94 -0.26 -2.54 16
23 Br -0.03 -0.38 34.08 -68.01 -2.32 -2.70 16
24 C 0.05 0.57 11.86 -16.86 -0.20 0.37 16
25 N -0.53 -6.49 5.70 -9.36 -0.05 -6.54 16
26 H 0.43 4.56 5.06 -40.82 -0.21 4.35 16
27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16
28 H 0.06 1.49 7.48 -51.92 -0.39 1.10 16
29 H 0.05 1.33 7.66 -51.93 -0.40 0.93 16
30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16
31 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16
32 H 0.07 1.18 7.41 -51.93 -0.38 0.80 16
33 H 0.05 0.61 7.14 -51.93 -0.37 0.24 16
34 H 0.16 2.25 8.06 -52.49 -0.42 1.82 16
35 H 0.18 1.30 8.06 -52.49 -0.42 0.88 16
LS Contribution 310.44 15.07 4.68 4.68
Total: -1.00 -30.88 310.44 -9.44 -40.33
By element:
Atomic # 1 Polarization: 8.03 SS G_CDS: -3.83 Total: 4.20 kcal
Atomic # 6 Polarization: 8.53 SS G_CDS: -2.64 Total: 5.89 kcal
Atomic # 7 Polarization: -56.61 SS G_CDS: -0.41 Total: -57.02 kcal
Atomic # 8 Polarization: -11.50 SS G_CDS: 0.09 Total: -11.41 kcal
Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal
Atomic # 35 Polarization: -0.38 SS G_CDS: -2.32 Total: -2.70 kcal
Total LS contribution 4.68 Total: 4.68 kcal
Total: -30.88 -9.44 -40.33 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001032506266.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 120.719 kcal
(2) G-P(sol) polarization free energy of solvation -30.885 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.835 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.445 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.330 kcal
(6) G-S(sol) free energy of system = (1) + (5) 80.390 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.54 seconds