Wall clock time and date at job start Tue Mar 31 2020 22:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86793 * 120.00469 * 2 1 4 4 H 1.48494 * 109.47626 * 270.00714 * 3 2 1 5 5 H 1.48501 * 109.47093 * 30.00886 * 3 2 1 6 6 H 1.48500 * 109.47123 * 150.00343 * 3 2 1 7 7 C 1.38819 * 119.99435 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99607 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00122 * 359.97438 * 7 2 1 10 10 C 1.47873 * 126.94498 * 359.97352 * 9 7 2 11 11 C 1.56021 * 105.10666 * 182.02164 * 10 9 7 12 12 H 1.08999 * 116.89410 * 159.20624 * 11 10 9 13 13 C 1.57087 * 99.60151 * 32.80840 * 11 10 9 14 14 C 1.49286 * 126.94564 * 180.02562 * 9 7 2 15 15 H 1.08998 * 116.78634 * 16.28182 * 14 9 7 16 16 C 1.56007 * 104.31669 * 246.59271 * 14 9 7 17 17 N 1.47863 * 105.11538 * 289.11111 * 16 14 9 18 18 C 1.34776 * 126.94466 * 181.87394 * 17 16 14 19 19 O 1.21625 * 120.00061 * 179.68766 * 18 17 16 20 20 C 1.47260 * 120.00175 * 359.68761 * 18 17 16 21 21 C 1.36749 * 126.93940 * 180.02562 * 20 18 17 22 22 N 1.34726 * 108.41128 * 180.02562 * 21 20 18 23 23 H 0.97001 * 124.85506 * 179.97438 * 22 21 20 24 24 C 1.36465 * 110.29248 * 359.97438 * 22 21 20 25 25 Br 1.89104 * 125.57728 * 179.74035 * 24 22 21 26 26 C 1.34578 * 108.84120 * 0.02562 * 24 22 21 27 27 H 0.97002 * 119.99105 * 359.97438 * 1 2 3 28 28 H 1.09004 * 110.31516 * 63.11754 * 10 9 7 29 29 H 1.08993 * 110.31809 * 300.93280 * 10 9 7 30 30 H 1.09000 * 112.36876 * 64.27777 * 13 11 10 31 31 H 1.09001 * 112.36224 * 191.62494 * 13 11 10 32 32 H 1.09001 * 110.41865 * 170.14438 * 16 14 9 33 33 H 1.08998 * 110.19903 * 47.96645 * 16 14 9 34 34 H 1.08005 * 125.79058 * 0.02562 * 21 20 18 35 35 H 1.08001 * 126.83749 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4479 2.6525 0.7002 6 1 3.5479 1.4399 0.7000 7 6 2.0102 -1.2023 -0.0005 8 1 3.0901 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1425 -2.5668 0.0005 11 6 -0.3641 -4.1103 0.0531 12 1 -1.3350 -4.4572 0.4071 13 6 0.8843 -4.5252 0.9116 14 6 1.9099 -3.7618 -0.0005 15 1 2.9617 -3.8481 0.2723 16 6 1.5084 -4.3519 -1.3878 17 7 0.0507 -4.5836 -1.3008 18 6 -0.7424 -5.1194 -2.2498 19 8 -1.9325 -5.2581 -2.0406 20 6 -0.1681 -5.5369 -3.5399 21 6 -0.8364 -6.0922 -4.5958 22 7 0.0492 -6.3286 -5.5831 23 1 -0.1705 -6.7204 -6.4429 24 6 1.2997 -5.9381 -5.2008 25 35 2.8659 -6.0801 -6.2510 26 6 1.2369 -5.4412 -3.9517 27 1 -0.4849 0.8401 0.0004 28 1 -0.5747 -2.1533 -0.9107 29 1 -0.5809 -2.0914 0.8778 30 1 0.8461 -4.1192 1.9224 31 1 1.0484 -5.6028 0.9110 32 1 2.0310 -5.2915 -1.5670 33 1 1.7314 -3.6369 -2.1797 34 1 -1.8947 -6.3051 -4.6320 35 1 2.0573 -5.0500 -3.3684 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032525625.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:21 Heat of formation + Delta-G solvation = 82.813725 kcal Electronic energy + Delta-G solvation = -21606.150225 eV Core-core repulsion = 18267.446802 eV Total energy + Delta-G solvation = -3338.703423 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.032 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.27058 -39.75218 -37.46607 -33.60564 -31.94213 -31.92061 -30.76223 -28.87571 -28.56827 -28.19930 -25.19500 -24.00476 -22.38765 -20.88330 -19.81152 -19.61329 -18.80686 -18.01349 -16.73493 -15.85736 -15.55842 -15.06897 -14.60582 -14.20832 -14.00838 -13.82317 -13.42749 -13.27912 -12.97937 -12.37248 -11.88734 -11.80502 -11.60745 -11.24425 -11.17749 -10.96248 -10.81630 -10.72772 -10.66335 -10.53568 -10.18221 -10.02834 -9.60103 -9.46688 -8.97652 -8.66471 -8.43154 -7.86469 -6.87917 -5.72849 -3.07104 1.12025 1.76514 2.10847 3.04923 3.39981 3.44620 3.47123 3.58872 3.87471 4.45430 4.90499 4.94271 5.20102 5.25549 5.28534 5.43444 5.48864 5.60830 5.69584 5.80246 5.83292 5.98567 6.25207 6.34451 6.43564 6.46529 6.50102 6.65115 6.65829 6.81586 7.08965 7.47158 7.55776 7.76805 8.13855 8.21905 8.74533 9.14243 9.75182 10.44661 11.39238 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.013400 B = 0.003837 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.978940 B = 7295.898095 C = 8468.503002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.230 4.230 8 H 0.081 0.919 9 N -0.596 5.596 10 C 0.175 3.825 11 C 0.100 3.900 12 H 0.114 0.886 13 C -0.153 4.153 14 C 0.139 3.861 15 H 0.106 0.894 16 C 0.082 3.918 17 N -0.598 5.598 18 C 0.602 3.398 19 O -0.565 6.565 20 C -0.213 4.213 21 C 0.092 3.908 22 N -0.541 5.541 23 H 0.419 0.581 24 C -0.009 4.009 25 Br 0.000 7.000 26 C -0.115 4.115 27 H 0.253 0.747 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.186 0.814 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.373 -16.000 -11.846 20.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.358 4.358 8 H 0.098 0.902 9 N -0.320 5.320 10 C 0.050 3.950 11 C -0.003 4.003 12 H 0.132 0.868 13 C -0.192 4.192 14 C 0.030 3.970 15 H 0.124 0.876 16 C -0.043 4.043 17 N -0.330 5.330 18 C 0.392 3.608 19 O -0.447 6.447 20 C -0.223 4.223 21 C -0.046 4.046 22 N -0.138 5.138 23 H 0.257 0.743 24 C -0.196 4.196 25 Br 0.083 6.917 26 C -0.142 4.142 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.203 0.797 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 4.240 -15.899 -12.314 20.552 hybrid contribution 0.009 0.833 -0.430 0.938 sum 4.249 -15.065 -12.744 20.185 Atomic orbital electron populations 1.69926 1.04934 1.25236 1.56476 1.24811 0.95664 0.97667 1.02116 0.86128 0.78567 0.83553 0.77533 1.21666 1.21727 1.20647 1.19044 0.90389 0.82088 1.44310 0.90160 1.45212 1.01351 0.99235 1.86238 1.21911 0.84616 0.87156 1.01310 1.24349 0.97743 0.97612 0.80575 0.86847 1.24173 0.96932 0.98916 0.99225 1.23188 0.96526 0.86315 0.90997 0.87624 1.23509 0.80232 0.98696 1.01874 1.48936 1.09213 1.59629 1.15221 1.16816 0.84974 0.76950 0.82010 1.90735 1.14968 1.58288 1.80685 1.20466 0.93254 1.12200 0.96417 1.21941 0.95594 0.99971 0.87116 1.41549 1.05911 1.50293 1.16094 0.74333 1.21802 0.85447 1.14857 0.97479 1.96753 1.27897 1.97916 1.69137 1.22651 0.96974 1.01476 0.93084 0.93630 0.93423 0.92657 0.89834 0.91647 0.92546 0.90810 0.79707 0.81709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.93 10.56 55.49 0.59 -26.35 16 2 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 3 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.23 -6.13 10.38 -15.06 -0.16 -6.28 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.60 -14.36 3.03 -156.37 -0.47 -14.83 16 10 C 0.18 4.25 4.77 -1.67 -0.01 4.24 16 11 C 0.10 1.97 5.24 -62.54 -0.33 1.64 16 12 H 0.11 2.17 8.06 -51.93 -0.42 1.75 16 13 C -0.15 -2.61 6.80 -22.31 -0.15 -2.76 16 14 C 0.14 2.57 5.52 -62.58 -0.35 2.23 16 15 H 0.11 1.74 8.14 -51.93 -0.42 1.32 16 16 C 0.08 1.42 4.39 -1.68 -0.01 1.42 16 17 N -0.60 -11.42 2.95 -158.08 -0.47 -11.89 16 18 C 0.60 11.62 7.89 -12.59 -0.10 11.52 16 19 O -0.57 -12.33 17.26 5.26 0.09 -12.24 16 20 C -0.21 -3.34 6.24 -103.35 -0.64 -3.99 16 21 C 0.09 1.12 11.69 -16.82 -0.20 0.92 16 22 N -0.54 -5.38 5.91 -11.27 -0.07 -5.45 16 23 H 0.42 2.69 8.96 -40.82 -0.37 2.33 16 24 C -0.01 -0.11 7.61 -16.79 -0.13 -0.24 16 25 Br 0.00 0.00 34.08 -68.01 -2.32 -2.32 16 26 C -0.11 -1.61 9.49 -37.45 -0.36 -1.97 16 27 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.05 1.34 7.68 -51.93 -0.40 0.94 16 29 H 0.06 1.47 7.46 -51.93 -0.39 1.08 16 30 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.06 0.81 6.94 -51.93 -0.36 0.45 16 33 H 0.07 1.40 7.19 -51.93 -0.37 1.03 16 34 H 0.19 1.86 8.06 -52.48 -0.42 1.44 16 35 H 0.17 2.27 4.89 -52.49 -0.26 2.01 16 LS Contribution 309.94 15.07 4.67 4.67 Total: -1.00 -32.68 309.94 -9.31 -42.00 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -3.80 Total: 3.17 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: -2.52 Total: 6.47 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: -0.42 Total: -58.51 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.09 Total: -12.24 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 35 Polarization: 0.00 SS G_CDS: -2.32 Total: -2.32 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.68 -9.31 -42.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032525625.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.811 kcal (2) G-P(sol) polarization free energy of solvation -32.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds