Wall clock time and date at job start Tue Mar 31 2020 22:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86793 * 120.00469 * 2 1 4 4 H 1.48494 * 109.47626 * 270.00714 * 3 2 1 5 5 H 1.48501 * 109.47093 * 30.00886 * 3 2 1 6 6 H 1.48500 * 109.47123 * 150.00343 * 3 2 1 7 7 C 1.38819 * 119.99435 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99607 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00122 * 359.97438 * 7 2 1 10 10 C 1.47873 * 126.94498 * 359.97352 * 9 7 2 11 11 C 1.56021 * 105.10666 * 182.02164 * 10 9 7 12 12 H 1.08999 * 116.89410 * 159.20624 * 11 10 9 13 13 C 1.57087 * 99.60151 * 32.80840 * 11 10 9 14 14 C 1.49286 * 126.94564 * 180.02562 * 9 7 2 15 15 H 1.08998 * 116.78634 * 16.28182 * 14 9 7 16 16 C 1.56007 * 104.31669 * 246.59271 * 14 9 7 17 17 N 1.47863 * 105.11538 * 289.11111 * 16 14 9 18 18 C 1.34776 * 126.94466 * 181.87394 * 17 16 14 19 19 O 1.21625 * 120.00061 * 179.68766 * 18 17 16 20 20 C 1.47260 * 120.00175 * 359.68761 * 18 17 16 21 21 C 1.36749 * 126.93940 * 180.02562 * 20 18 17 22 22 N 1.34726 * 108.41128 * 180.02562 * 21 20 18 23 23 H 0.97001 * 124.85506 * 179.97438 * 22 21 20 24 24 C 1.36465 * 110.29248 * 359.97438 * 22 21 20 25 25 Br 1.89104 * 125.57728 * 179.74035 * 24 22 21 26 26 C 1.34578 * 108.84120 * 0.02562 * 24 22 21 27 27 H 0.97002 * 119.99105 * 359.97438 * 1 2 3 28 28 H 1.09004 * 110.31516 * 63.11754 * 10 9 7 29 29 H 1.08993 * 110.31809 * 300.93280 * 10 9 7 30 30 H 1.09000 * 112.36876 * 64.27777 * 13 11 10 31 31 H 1.09001 * 112.36224 * 191.62494 * 13 11 10 32 32 H 1.09001 * 110.41865 * 170.14438 * 16 14 9 33 33 H 1.08998 * 110.19903 * 47.96645 * 16 14 9 34 34 H 1.08005 * 125.79058 * 0.02562 * 21 20 18 35 35 H 1.08001 * 126.83749 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4479 2.6525 0.7002 6 1 3.5479 1.4399 0.7000 7 6 2.0102 -1.2023 -0.0005 8 1 3.0901 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1425 -2.5668 0.0005 11 6 -0.3641 -4.1103 0.0531 12 1 -1.3350 -4.4572 0.4071 13 6 0.8843 -4.5252 0.9116 14 6 1.9099 -3.7618 -0.0005 15 1 2.9617 -3.8481 0.2723 16 6 1.5084 -4.3519 -1.3878 17 7 0.0507 -4.5836 -1.3008 18 6 -0.7424 -5.1194 -2.2498 19 8 -1.9325 -5.2581 -2.0406 20 6 -0.1681 -5.5369 -3.5399 21 6 -0.8364 -6.0922 -4.5958 22 7 0.0492 -6.3286 -5.5831 23 1 -0.1705 -6.7204 -6.4429 24 6 1.2997 -5.9381 -5.2008 25 35 2.8659 -6.0801 -6.2510 26 6 1.2369 -5.4412 -3.9517 27 1 -0.4849 0.8401 0.0004 28 1 -0.5747 -2.1533 -0.9107 29 1 -0.5809 -2.0914 0.8778 30 1 0.8461 -4.1192 1.9224 31 1 1.0484 -5.6028 0.9110 32 1 2.0310 -5.2915 -1.5670 33 1 1.7314 -3.6369 -2.1797 34 1 -1.8947 -6.3051 -4.6320 35 1 2.0573 -5.0500 -3.3684 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032525625.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:21 Heat of formation + Delta-G solvation = 61.242131 kcal Electronic energy + Delta-G solvation = -21607.085640 eV Core-core repulsion = 18267.446802 eV Total energy + Delta-G solvation = -3339.638838 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.032 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.32025 -41.25278 -39.01065 -35.43928 -33.51280 -32.83166 -32.12397 -30.47269 -30.23944 -29.24876 -26.96221 -25.61387 -23.87359 -22.00380 -21.23378 -21.19304 -19.97291 -19.43578 -18.43036 -17.38207 -17.20280 -16.39884 -16.17968 -15.64710 -15.42359 -15.06698 -14.88025 -14.56898 -14.36192 -13.81110 -13.50744 -13.27986 -13.17947 -13.04574 -12.76075 -12.67241 -12.24318 -12.10231 -12.01946 -12.00157 -11.79315 -11.57949 -11.49811 -10.99452 -10.68437 -10.03335 -9.56701 -9.27170 -8.86693 -7.81081 -5.16630 0.20790 0.68747 1.03655 1.48613 1.50122 1.58717 1.98543 2.36993 2.50827 2.51961 3.36366 3.42369 3.71157 3.91845 3.97810 4.01963 4.09284 4.25364 4.27214 4.43868 4.61019 4.67763 4.80322 4.92376 4.98721 5.06471 5.17529 5.29044 5.38641 5.48494 5.51824 5.67133 5.70340 6.13270 6.30653 6.75316 7.06338 7.27413 7.74408 8.45421 9.30217 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.013400 B = 0.003837 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.978940 B = 7295.898095 C = 8468.503002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.072 4.072 3 Si 0.976 3.024 4 H -0.292 1.292 5 H -0.302 1.302 6 H -0.261 1.261 7 C -0.228 4.228 8 H 0.096 0.904 9 N -0.615 5.615 10 C 0.189 3.811 11 C 0.101 3.899 12 H 0.115 0.885 13 C -0.130 4.130 14 C 0.133 3.867 15 H 0.137 0.863 16 C 0.094 3.906 17 N -0.604 5.604 18 C 0.595 3.405 19 O -0.602 6.602 20 C -0.255 4.255 21 C 0.114 3.886 22 N -0.520 5.520 23 H 0.439 0.561 24 C -0.005 4.005 25 Br 0.023 6.977 26 C -0.130 4.130 27 H 0.243 0.757 28 H -0.006 1.006 29 H 0.019 0.981 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.053 0.947 34 H 0.207 0.793 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.604 -18.176 -13.026 23.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.264 4.264 3 Si 0.805 3.195 4 H -0.219 1.219 5 H -0.229 1.229 6 H -0.185 1.185 7 C -0.357 4.357 8 H 0.114 0.886 9 N -0.339 5.339 10 C 0.063 3.937 11 C -0.002 4.002 12 H 0.133 0.867 13 C -0.169 4.169 14 C 0.026 3.974 15 H 0.155 0.845 16 C -0.031 4.031 17 N -0.336 5.336 18 C 0.388 3.612 19 O -0.487 6.487 20 C -0.265 4.265 21 C -0.026 4.026 22 N -0.118 5.118 23 H 0.280 0.720 24 C -0.193 4.193 25 Br 0.106 6.894 26 C -0.157 4.157 27 H 0.052 0.948 28 H 0.013 0.987 29 H 0.037 0.963 30 H 0.100 0.900 31 H 0.120 0.880 32 H 0.115 0.885 33 H 0.071 0.929 34 H 0.223 0.777 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 6.541 -18.132 -13.526 23.548 hybrid contribution -0.651 1.436 -0.167 1.586 sum 5.890 -16.696 -13.693 22.382 Atomic orbital electron populations 1.70176 1.06637 1.25051 1.58894 1.25656 0.96372 1.01153 1.03247 0.85098 0.77888 0.79338 0.77149 1.21908 1.22868 1.18543 1.19550 0.91284 0.83096 1.41750 0.88588 1.45461 1.01423 1.01030 1.86032 1.21492 0.84954 0.90181 0.97059 1.24178 0.99448 0.94163 0.82399 0.86719 1.24067 0.93894 1.00778 0.98134 1.23620 0.98333 0.83303 0.92111 0.84537 1.23393 0.79509 0.99987 1.00175 1.49013 1.10031 1.59576 1.14945 1.17392 0.84596 0.76284 0.82971 1.90695 1.16464 1.59986 1.81519 1.20297 0.94737 1.15481 0.95992 1.22197 0.96472 0.97627 0.86317 1.41531 1.04976 1.48893 1.16430 0.71952 1.21915 0.86623 1.13585 0.97146 1.96790 1.26610 1.97798 1.68179 1.22615 0.96244 1.02597 0.94223 0.94792 0.98735 0.96313 0.89969 0.87998 0.88513 0.92852 0.77652 0.81852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.18 10.56 21.65 0.23 -58.95 16 2 C -0.07 -4.07 5.49 84.86 0.47 -3.61 16 3 Si 0.98 45.65 29.55 68.60 2.03 47.68 16 4 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 5 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 6 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.23 -12.18 10.38 84.04 0.87 -11.31 16 8 H 0.10 4.71 7.83 -2.91 -0.02 4.69 16 9 N -0.62 -29.93 3.03 -648.62 -1.96 -31.89 16 10 C 0.19 9.67 4.77 87.16 0.42 10.08 16 11 C 0.10 4.05 5.24 46.93 0.25 4.30 16 12 H 0.11 4.52 8.06 -2.39 -0.02 4.50 16 13 C -0.13 -4.16 6.80 33.46 0.23 -3.93 16 14 C 0.13 4.66 5.52 46.92 0.26 4.92 16 15 H 0.14 3.97 8.14 -2.39 -0.02 3.95 16 16 C 0.09 3.10 4.39 87.16 0.38 3.48 16 17 N -0.60 -23.00 2.95 -772.30 -2.28 -25.28 16 18 C 0.60 23.05 7.89 86.62 0.68 23.74 16 19 O -0.60 -26.80 17.26 -4.11 -0.07 -26.87 16 20 C -0.25 -7.73 6.24 -19.04 -0.12 -7.85 16 21 C 0.11 2.54 11.69 83.90 0.98 3.52 16 22 N -0.52 -8.81 5.91 -189.55 -1.12 -9.93 16 23 H 0.44 4.06 8.96 -92.71 -0.83 3.23 16 24 C -0.01 -0.11 7.61 83.13 0.63 0.52 16 25 Br 0.02 0.39 34.08 -20.37 -0.69 -0.30 16 26 C -0.13 -3.42 9.49 23.65 0.22 -3.19 16 27 H 0.24 14.79 8.31 -92.71 -0.77 14.02 16 28 H -0.01 -0.34 7.68 -2.38 -0.02 -0.36 16 29 H 0.02 1.07 7.46 -2.39 -0.02 1.05 16 30 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 31 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.10 2.47 6.94 -2.39 -0.02 2.45 16 33 H 0.05 2.00 7.19 -2.39 -0.02 1.99 16 34 H 0.21 3.65 8.06 -2.91 -0.02 3.63 16 35 H 0.16 4.20 4.89 -2.91 -0.01 4.19 16 Total: -1.00 -75.14 309.94 1.71 -73.43 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 0.31 Total: 11.44 kcal Atomic # 6 Polarization: 15.40 SS G_CDS: 5.27 Total: 20.67 kcal Atomic # 7 Polarization: -120.91 SS G_CDS: -5.13 Total: -126.05 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.07 Total: -26.87 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Atomic # 35 Polarization: 0.39 SS G_CDS: -0.69 Total: -0.30 kcal Total: -75.14 1.71 -73.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032525625.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.670 kcal (2) G-P(sol) polarization free energy of solvation -75.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds