Wall clock time and date at job start Tue Mar 31 2020 22:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.43208 * 119.99868 * 110.60030 * 3 2 1 5 5 N 3.51032 * 140.68910 * 110.59264 * 2 1 3 6 6 C 1.41127 * 120.00084 * 290.59015 * 3 2 1 7 7 C 1.38950 * 120.00311 * 6.12708 * 6 3 2 8 8 H 1.08005 * 119.99197 * 339.32708 * 7 6 3 9 9 C 1.40863 * 120.00380 * 159.32914 * 7 6 3 10 10 N 1.30317 * 119.99736 * 350.11510 * 9 7 6 11 11 Si 1.86795 * 119.99887 * 170.11716 * 9 7 6 12 12 H 1.48500 * 109.47418 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47383 * 120.00134 * 11 9 7 14 14 H 1.48502 * 109.47123 * 240.00135 * 11 9 7 15 15 N 1.38437 * 120.00113 * 186.11679 * 6 3 2 16 16 C 1.38577 * 119.99731 * 119.94387 * 15 6 3 17 17 N 1.33036 * 120.81355 * 354.64842 * 16 15 6 18 18 C 1.32135 * 120.94395 * 179.67089 * 17 16 15 19 19 Cl 1.73602 * 118.67847 * 180.31255 * 18 17 16 20 20 N 1.31712 * 122.63927 * 0.63956 * 18 17 16 21 21 C 1.33189 * 120.70934 * 359.67498 * 20 18 17 22 22 N 1.37042 * 134.04158 * 180.02562 * 21 20 18 23 23 H 0.96999 * 124.74776 * 359.92956 * 22 21 20 24 24 C 1.36049 * 110.50683 * 179.97438 * 22 21 20 25 25 C 1.36316 * 109.62711 * 359.97438 * 24 22 21 26 26 C 1.43199 * 126.83862 * 179.97438 * 25 24 22 27 27 N 6.74939 * 164.89952 * 13.26304 * 2 1 3 28 28 C 1.39979 * 120.81115 * 174.91803 * 16 15 6 29 29 H 0.97001 * 119.99965 * 185.05051 * 10 9 7 30 30 H 0.96999 * 120.00158 * 299.67952 * 15 6 3 31 31 H 1.07992 * 125.18988 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2838 0.4373 -1.1609 5 7 3.8520 0.7822 -2.0818 6 6 3.2739 -0.4289 1.1441 7 6 2.5854 -0.9714 2.2222 8 1 1.5314 -0.7708 2.3459 9 6 3.2621 -1.7829 3.1538 10 7 4.4774 -2.1835 2.9072 11 14 2.4173 -2.2848 4.7424 12 1 1.0515 -1.7031 4.7821 13 1 2.3273 -3.7655 4.8089 14 1 3.2017 -1.7841 5.8997 15 7 4.6523 -0.3099 1.1922 16 6 5.2473 0.4579 2.1806 17 7 4.5089 1.1719 3.0260 18 6 5.0733 1.8998 3.9735 19 17 4.0531 2.8023 5.0498 20 7 6.3790 1.9730 4.1301 21 6 7.1993 1.2974 3.3272 22 7 8.5615 1.1743 3.2422 23 1 9.1944 1.6186 3.8278 24 6 8.9021 0.3426 2.2208 25 6 7.7743 -0.1082 1.6020 26 6 7.7067 -1.0005 0.4840 27 7 7.6524 -1.7114 -0.4034 28 6 6.6403 0.5055 2.3103 29 1 4.9166 -2.8012 3.5126 30 1 5.2017 -0.7670 0.5365 31 1 9.9119 0.0796 1.9427 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169079236.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:33 Heat of formation + Delta-G solvation = 174.140099 kcal Electronic energy + Delta-G solvation = -25544.902557 eV Core-core repulsion = 21660.648355 eV Total energy + Delta-G solvation = -3884.254201 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 339.033 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.94306 -39.04515 -37.68095 -36.47462 -36.23851 -35.34595 -34.73460 -34.05469 -32.57150 -31.40318 -30.47033 -28.73073 -27.18817 -24.09455 -23.50883 -22.95131 -21.42895 -19.61027 -19.22157 -17.58599 -17.18628 -16.86906 -16.51872 -16.20233 -15.82508 -15.63672 -14.97087 -14.42182 -13.96444 -13.86132 -13.74018 -13.05020 -12.90336 -12.81807 -12.62730 -12.44029 -12.36496 -12.06041 -11.80690 -11.73623 -11.54874 -11.50681 -11.20297 -11.02152 -10.93205 -10.87795 -10.69545 -10.50950 -10.18061 -9.23089 -9.11876 -9.02954 -8.22770 -7.86280 -7.24844 -5.44025 0.88460 1.31945 1.54347 1.85723 2.21739 2.59319 2.69002 2.77197 2.78785 2.83512 3.37556 3.45739 3.57016 3.85385 3.98539 4.05800 4.07992 4.19685 4.30971 4.46161 4.67011 4.75867 4.98963 5.17800 5.37808 5.54380 5.71459 5.90451 6.14983 6.32262 6.49285 6.72807 6.97752 7.11523 7.18989 7.56126 7.66043 7.67269 7.91023 8.11338 8.48209 8.94124 9.10807 9.14612 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.008116 B = 0.006453 C = 0.005083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3449.006918 B = 4337.800091 C = 5507.662228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C 0.328 3.672 3 C -0.309 4.309 4 C 0.305 3.695 5 N -0.531 5.531 6 C 0.370 3.630 7 C -0.338 4.338 8 H 0.117 0.883 9 C 0.074 3.926 10 N -0.730 5.730 11 Si 0.924 3.076 12 H -0.243 1.243 13 H -0.263 1.263 14 H -0.260 1.260 15 N -0.607 5.607 16 C 0.544 3.456 17 N -0.552 5.552 18 C 0.436 3.564 19 Cl 0.019 6.981 20 N -0.570 5.570 21 C 0.359 3.641 22 N -0.553 5.553 23 H 0.429 0.571 24 C 0.112 3.888 25 C -0.074 4.074 26 C 0.277 3.723 27 N -0.412 5.412 28 C -0.228 4.228 29 H 0.303 0.697 30 H 0.412 0.588 31 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.748 1.993 11.292 17.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.213 5.213 2 C 0.020 3.980 3 C -0.327 4.327 4 C -0.002 4.002 5 N -0.213 5.213 6 C 0.267 3.733 7 C -0.365 4.365 8 H 0.135 0.865 9 C -0.157 4.157 10 N -0.349 5.349 11 Si 0.745 3.255 12 H -0.166 1.166 13 H -0.187 1.187 14 H -0.184 1.184 15 N -0.229 5.229 16 C 0.294 3.706 17 N -0.282 5.282 18 C 0.138 3.862 19 Cl 0.047 6.953 20 N -0.301 5.301 21 C 0.122 3.878 22 N -0.159 5.159 23 H 0.268 0.732 24 C -0.022 4.022 25 C -0.087 4.087 26 C -0.038 4.038 27 N -0.088 5.088 28 C -0.244 4.244 29 H 0.115 0.885 30 H 0.251 0.749 31 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 11.324 1.956 9.325 14.799 hybrid contribution 1.011 -0.538 1.058 1.559 sum 12.334 1.419 10.384 16.185 Atomic orbital electron populations 1.81061 1.12099 1.18006 1.10102 1.24558 0.91148 0.90476 0.91863 1.12747 0.83219 1.43059 0.93671 1.25215 0.92639 0.90514 0.91878 1.81063 1.09645 1.18605 1.11999 1.16721 0.79027 0.86667 0.90867 1.20293 0.98452 1.15604 1.02196 0.86540 1.26571 0.94294 0.94285 1.00538 1.69459 1.11075 1.18844 1.35520 0.85891 0.81618 0.79438 0.78516 1.16587 1.18724 1.18443 1.41404 1.06331 1.46928 1.28209 1.17210 0.84727 0.84035 0.84592 1.67628 1.38551 1.14052 1.07952 1.21911 0.84551 0.90389 0.89316 1.98411 1.65149 1.71095 1.60641 1.66547 1.02893 1.29046 1.31565 1.17504 0.84802 0.93683 0.91859 1.41102 1.04230 1.41191 1.29410 0.73201 1.21802 0.98693 0.92985 0.88699 1.15431 0.92299 1.03885 0.97082 1.24635 0.94446 0.92613 0.92112 1.81415 1.06242 1.10336 1.10850 1.19352 0.92537 1.08810 1.03652 0.88510 0.74902 0.78863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -12.73 18.54 41.84 0.78 -11.95 16 2 C 0.33 7.62 13.90 -22.47 -0.31 7.30 16 3 C -0.31 -6.94 5.88 -104.95 -0.62 -7.55 16 4 C 0.30 7.10 14.80 -22.48 -0.33 6.76 16 5 N -0.53 -12.81 18.54 41.82 0.78 -12.04 16 6 C 0.37 7.87 5.49 -83.52 -0.46 7.42 16 7 C -0.34 -7.00 7.86 -38.33 -0.30 -7.30 16 8 H 0.12 2.46 7.00 -52.48 -0.37 2.09 16 9 C 0.07 1.40 4.99 -17.20 -0.09 1.31 16 10 N -0.73 -13.69 11.00 55.60 0.61 -13.08 16 11 Si 0.92 15.06 29.58 -169.99 -5.03 10.03 16 12 H -0.24 -4.06 7.11 56.52 0.40 -3.66 16 13 H -0.26 -4.18 7.11 56.52 0.40 -3.77 16 14 H -0.26 -4.24 7.11 56.52 0.40 -3.84 16 15 N -0.61 -12.06 3.32 -9.52 -0.03 -12.09 16 16 C 0.54 10.14 5.89 -154.57 -0.91 9.23 16 17 N -0.55 -10.51 9.05 -10.75 -0.10 -10.61 16 18 C 0.44 7.45 8.15 -91.93 -0.75 6.70 16 19 Cl 0.02 0.29 29.25 -51.86 -1.52 -1.23 16 20 N -0.57 -8.84 10.43 -10.96 -0.11 -8.96 16 21 C 0.36 4.97 8.46 -155.70 -1.32 3.65 16 22 N -0.55 -4.75 5.97 -11.92 -0.07 -4.82 16 23 H 0.43 2.11 8.96 -40.82 -0.37 1.75 16 24 C 0.11 0.89 11.80 -16.37 -0.19 0.70 16 25 C -0.07 -0.96 6.12 -105.06 -0.64 -1.60 16 26 C 0.28 4.15 14.27 -22.40 -0.32 3.83 16 27 N -0.41 -7.05 18.55 41.93 0.78 -6.27 16 28 C -0.23 -3.60 6.32 -104.79 -0.66 -4.27 16 29 H 0.30 5.16 8.29 -40.82 -0.34 4.82 16 30 H 0.41 8.22 7.14 -40.82 -0.29 7.92 16 31 H 0.19 0.62 8.06 -52.49 -0.42 0.19 16 LS Contribution 328.93 15.07 4.96 4.96 Total: -1.00 -27.92 328.93 -6.45 -34.37 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -0.58 Total: 5.52 kcal Atomic # 6 Polarization: 33.09 SS G_CDS: -6.90 Total: 26.18 kcal Atomic # 7 Polarization: -82.44 SS G_CDS: 2.63 Total: -79.82 kcal Atomic # 14 Polarization: 15.06 SS G_CDS: -5.03 Total: 10.03 kcal Atomic # 17 Polarization: 0.29 SS G_CDS: -1.52 Total: -1.23 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.92 -6.45 -34.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079236.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.506 kcal (2) G-P(sol) polarization free energy of solvation -27.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 180.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 174.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds