Wall clock time and date at job start Tue Mar 31 2020 22:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.43208 * 119.99868 * 110.60030 * 3 2 1 5 5 N 3.51032 * 140.68910 * 110.59264 * 2 1 3 6 6 C 1.41127 * 120.00084 * 290.59015 * 3 2 1 7 7 C 1.38950 * 120.00311 * 6.12708 * 6 3 2 8 8 H 1.08005 * 119.99197 * 339.32708 * 7 6 3 9 9 C 1.40863 * 120.00380 * 159.32914 * 7 6 3 10 10 N 1.30317 * 119.99736 * 350.11510 * 9 7 6 11 11 Si 1.86795 * 119.99887 * 170.11716 * 9 7 6 12 12 H 1.48500 * 109.47418 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47383 * 120.00134 * 11 9 7 14 14 H 1.48502 * 109.47123 * 240.00135 * 11 9 7 15 15 N 1.38437 * 120.00113 * 186.11679 * 6 3 2 16 16 C 1.38577 * 119.99731 * 119.94387 * 15 6 3 17 17 N 1.33036 * 120.81355 * 354.64842 * 16 15 6 18 18 C 1.32135 * 120.94395 * 179.67089 * 17 16 15 19 19 Cl 1.73602 * 118.67847 * 180.31255 * 18 17 16 20 20 N 1.31712 * 122.63927 * 0.63956 * 18 17 16 21 21 C 1.33189 * 120.70934 * 359.67498 * 20 18 17 22 22 N 1.37042 * 134.04158 * 180.02562 * 21 20 18 23 23 H 0.96999 * 124.74776 * 359.92956 * 22 21 20 24 24 C 1.36049 * 110.50683 * 179.97438 * 22 21 20 25 25 C 1.36316 * 109.62711 * 359.97438 * 24 22 21 26 26 C 1.43199 * 126.83862 * 179.97438 * 25 24 22 27 27 N 6.74939 * 164.89952 * 13.26304 * 2 1 3 28 28 C 1.39979 * 120.81115 * 174.91803 * 16 15 6 29 29 H 0.97001 * 119.99965 * 185.05051 * 10 9 7 30 30 H 0.96999 * 120.00158 * 299.67952 * 15 6 3 31 31 H 1.07992 * 125.18988 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2838 0.4373 -1.1609 5 7 3.8520 0.7822 -2.0818 6 6 3.2739 -0.4289 1.1441 7 6 2.5854 -0.9714 2.2222 8 1 1.5314 -0.7708 2.3459 9 6 3.2621 -1.7829 3.1538 10 7 4.4774 -2.1835 2.9072 11 14 2.4173 -2.2848 4.7424 12 1 1.0515 -1.7031 4.7821 13 1 2.3273 -3.7655 4.8089 14 1 3.2017 -1.7841 5.8997 15 7 4.6523 -0.3099 1.1922 16 6 5.2473 0.4579 2.1806 17 7 4.5089 1.1719 3.0260 18 6 5.0733 1.8998 3.9735 19 17 4.0531 2.8023 5.0498 20 7 6.3790 1.9730 4.1301 21 6 7.1993 1.2974 3.3272 22 7 8.5615 1.1743 3.2422 23 1 9.1944 1.6186 3.8278 24 6 8.9021 0.3426 2.2208 25 6 7.7743 -0.1082 1.6020 26 6 7.7067 -1.0005 0.4840 27 7 7.6524 -1.7114 -0.4034 28 6 6.6403 0.5055 2.3103 29 1 4.9166 -2.8012 3.5126 30 1 5.2017 -0.7670 0.5365 31 1 9.9119 0.0796 1.9427 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169079236.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:32 Heat of formation + Delta-G solvation = 158.829709 kcal Electronic energy + Delta-G solvation = -25545.566465 eV Core-core repulsion = 21660.648355 eV Total energy + Delta-G solvation = -3884.918110 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 339.033 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.02029 -40.24656 -39.08053 -37.69275 -37.48503 -37.00922 -36.57147 -35.49881 -33.95528 -32.55782 -31.77967 -29.93655 -28.84450 -25.32280 -24.71825 -23.96552 -22.89068 -20.93989 -20.62328 -19.13367 -18.47470 -18.05169 -17.94746 -17.25017 -17.20474 -16.77628 -16.21601 -15.71825 -15.26369 -14.96394 -14.78131 -14.62581 -14.43564 -14.15711 -14.02500 -13.94536 -13.58615 -13.52068 -13.48190 -13.41987 -13.19824 -13.08133 -12.75264 -12.58916 -12.37854 -12.10301 -11.94066 -11.87415 -11.59284 -10.56542 -10.30811 -10.22182 -9.67223 -9.24512 -8.57481 -7.14654 -0.22945 0.11671 0.36461 0.55698 0.98655 1.32771 1.49227 1.49426 1.62974 1.71224 1.97398 2.05345 2.07141 2.19116 2.46983 2.50921 2.60619 2.86383 2.95475 3.37478 3.43608 3.59792 3.67156 3.85122 4.08474 4.36442 4.58594 4.64058 4.68699 4.87066 5.32776 5.46181 5.52105 5.68200 5.95193 6.09019 6.27416 6.51331 6.59926 6.66042 7.12151 7.17359 7.31864 7.64645 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.008116 B = 0.006453 C = 0.005083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3449.006918 B = 4337.800091 C = 5507.662228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C 0.332 3.668 3 C -0.329 4.329 4 C 0.311 3.689 5 N -0.556 5.556 6 C 0.363 3.637 7 C -0.335 4.335 8 H 0.107 0.893 9 C 0.051 3.949 10 N -0.726 5.726 11 Si 0.972 3.028 12 H -0.252 1.252 13 H -0.251 1.251 14 H -0.256 1.256 15 N -0.617 5.617 16 C 0.519 3.481 17 N -0.577 5.577 18 C 0.413 3.587 19 Cl 0.029 6.971 20 N -0.559 5.559 21 C 0.348 3.652 22 N -0.526 5.526 23 H 0.453 0.547 24 C 0.188 3.812 25 C -0.127 4.127 26 C 0.299 3.701 27 N -0.466 5.466 28 C -0.236 4.236 29 H 0.314 0.686 30 H 0.407 0.593 31 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.928 1.875 13.690 21.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.236 5.236 2 C 0.025 3.975 3 C -0.348 4.348 4 C 0.006 3.994 5 N -0.240 5.240 6 C 0.260 3.740 7 C -0.361 4.361 8 H 0.125 0.875 9 C -0.180 4.180 10 N -0.345 5.345 11 Si 0.791 3.209 12 H -0.175 1.175 13 H -0.174 1.174 14 H -0.180 1.180 15 N -0.240 5.240 16 C 0.271 3.729 17 N -0.307 5.307 18 C 0.116 3.884 19 Cl 0.057 6.943 20 N -0.288 5.288 21 C 0.109 3.891 22 N -0.134 5.134 23 H 0.297 0.703 24 C 0.053 3.947 25 C -0.140 4.140 26 C -0.015 4.015 27 N -0.143 5.143 28 C -0.251 4.251 29 H 0.127 0.873 30 H 0.246 0.754 31 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 14.557 1.879 11.763 18.810 hybrid contribution 0.248 -0.478 0.504 0.738 sum 14.805 1.401 12.268 19.279 Atomic orbital electron populations 1.81033 1.12500 1.19329 1.10773 1.24718 0.91328 0.90048 0.91385 1.12864 0.82884 1.44815 0.94223 1.25347 0.92269 0.90083 0.91728 1.81033 1.10271 1.20031 1.12626 1.16724 0.80125 0.86622 0.90544 1.20433 0.98166 1.14973 1.02535 0.87493 1.27065 0.94818 0.94028 1.02099 1.69449 1.11180 1.17881 1.35961 0.85202 0.80315 0.79695 0.75693 1.17517 1.17441 1.17964 1.41261 1.05369 1.48192 1.29150 1.17439 0.86060 0.84561 0.84799 1.67504 1.39886 1.14663 1.08639 1.22077 0.85324 0.91249 0.89780 1.98402 1.65074 1.70745 1.60092 1.66612 1.02468 1.28399 1.31284 1.17718 0.86723 0.93386 0.91297 1.41213 1.02447 1.40363 1.29386 0.70311 1.22805 0.99675 0.87600 0.84616 1.15529 0.93043 1.06733 0.98646 1.24880 0.93121 0.91778 0.91688 1.81427 1.07649 1.12546 1.12723 1.19596 0.92064 1.09084 1.04402 0.87347 0.75441 0.72522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -27.29 18.54 19.00 0.35 -26.94 16 2 C 0.33 15.98 13.90 88.33 1.23 17.21 16 3 C -0.33 -15.37 5.88 -20.08 -0.12 -15.48 16 4 C 0.31 15.06 14.80 88.34 1.31 16.37 16 5 N -0.56 -27.72 18.54 19.00 0.35 -27.37 16 6 C 0.36 15.93 5.49 38.98 0.21 16.15 16 7 C -0.33 -14.08 7.86 23.08 0.18 -13.90 16 8 H 0.11 4.64 7.00 -2.91 -0.02 4.62 16 9 C 0.05 1.90 4.99 85.56 0.43 2.32 16 10 N -0.73 -26.69 11.00 21.98 0.24 -26.45 16 11 Si 0.97 29.79 29.58 68.60 2.03 31.82 16 12 H -0.25 -8.06 7.11 99.48 0.71 -7.36 16 13 H -0.25 -7.20 7.11 99.48 0.71 -6.49 16 14 H -0.26 -7.63 7.11 99.48 0.71 -6.93 16 15 N -0.62 -25.04 3.32 -184.04 -0.61 -25.65 16 16 C 0.52 19.32 5.89 133.22 0.78 20.10 16 17 N -0.58 -22.03 9.05 -187.93 -1.70 -23.73 16 18 C 0.41 13.81 8.15 180.81 1.47 15.29 16 19 Cl 0.03 0.85 29.25 -2.72 -0.08 0.77 16 20 N -0.56 -16.19 10.43 -188.58 -1.97 -18.16 16 21 C 0.35 8.57 8.46 133.82 1.13 9.70 16 22 N -0.53 -6.19 5.97 -191.63 -1.14 -7.34 16 23 H 0.45 1.61 8.96 -92.71 -0.83 0.78 16 24 C 0.19 1.90 11.80 83.59 0.99 2.89 16 25 C -0.13 -2.92 6.12 -20.15 -0.12 -3.04 16 26 C 0.30 8.61 14.27 88.31 1.26 9.87 16 27 N -0.47 -15.95 18.55 19.03 0.35 -15.60 16 28 C -0.24 -7.07 6.32 -19.98 -0.13 -7.20 16 29 H 0.31 10.22 8.29 -92.71 -0.77 9.45 16 30 H 0.41 16.77 7.14 -92.71 -0.66 16.11 16 31 H 0.26 -0.59 8.06 -2.91 -0.02 -0.62 16 Total: -1.00 -65.06 328.93 6.27 -58.79 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -0.18 Total: 9.57 kcal Atomic # 6 Polarization: 61.64 SS G_CDS: 8.63 Total: 70.27 kcal Atomic # 7 Polarization: -167.09 SS G_CDS: -4.12 Total: -171.22 kcal Atomic # 14 Polarization: 29.79 SS G_CDS: 2.03 Total: 31.82 kcal Atomic # 17 Polarization: 0.85 SS G_CDS: -0.08 Total: 0.77 kcal Total: -65.06 6.27 -58.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079236.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 217.620 kcal (2) G-P(sol) polarization free energy of solvation -65.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds