Wall clock time and date at job start Tue Mar 31 2020 22:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37098 * 120.00082 * 2 1 4 4 H 1.08004 * 119.99805 * 157.83580 * 3 2 1 5 5 C 1.38952 * 120.00128 * 337.56378 * 3 2 1 6 6 N 1.31404 * 119.99841 * 348.81866 * 5 3 2 7 7 Si 1.86800 * 119.99953 * 168.82437 * 5 3 2 8 8 H 1.48498 * 109.47503 * 359.97438 * 7 5 3 9 9 H 1.48508 * 109.47085 * 119.99869 * 7 5 3 10 10 H 1.48497 * 109.46892 * 239.99382 * 7 5 3 11 11 C 1.34781 * 120.00052 * 180.02562 * 2 1 3 12 12 O 1.21289 * 120.00035 * 179.97438 * 11 2 1 13 13 C 1.50699 * 119.99767 * 359.97438 * 11 2 1 14 14 H 1.09001 * 109.68219 * 304.47937 * 13 11 2 15 15 C 1.53408 * 109.68156 * 65.00177 * 13 11 2 16 16 C 1.53073 * 108.29891 * 184.43072 * 15 13 11 17 17 C 1.50766 * 109.68072 * 311.78490 * 16 15 13 18 18 C 1.38505 * 118.75516 * 197.82787 * 17 16 15 19 19 C 1.38188 * 120.30819 * 180.16127 * 18 17 16 20 20 Br 1.89101 * 120.01646 * 180.02562 * 19 18 17 21 21 C 1.38367 * 119.96297 * 0.02562 * 19 18 17 22 22 C 1.37958 * 119.94649 * 359.92318 * 21 19 18 23 23 C 1.38371 * 121.40789 * 17.84861 * 17 16 15 24 24 O 1.35864 * 121.79993 * 359.48281 * 23 17 16 25 25 H 1.08996 * 109.47362 * 86.79649 * 1 2 3 26 26 H 1.09000 * 109.46950 * 206.79819 * 1 2 3 27 27 H 1.09005 * 109.47003 * 326.79235 * 1 2 3 28 28 H 0.97001 * 120.00342 * 179.97438 * 6 5 3 29 29 H 1.09005 * 109.69744 * 304.13269 * 15 13 11 30 30 H 1.08996 * 109.70044 * 64.68941 * 15 13 11 31 31 H 1.08998 * 109.43511 * 71.84893 * 16 15 13 32 32 H 1.09000 * 109.43849 * 191.76269 * 16 15 13 33 33 H 1.08003 * 119.84742 * 0.13732 * 18 17 16 34 34 H 1.08000 * 120.01999 * 179.97438 * 21 19 18 35 35 H 1.08002 * 119.88641 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1707 1.2218 0.3529 5 6 1.5346 2.3451 -0.4593 6 7 0.3861 2.2712 -1.0934 7 14 2.3395 4.0068 -0.1753 8 1 3.6173 3.8191 0.5577 9 1 2.6094 4.6561 -1.4833 10 1 1.4313 4.8662 0.6258 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0010 13 6 1.3853 -2.4723 -0.0005 14 1 0.6989 -2.4999 0.8458 15 6 0.5979 -2.6142 -1.3094 16 6 -0.2404 -3.8926 -1.2298 17 6 0.6214 -5.0363 -0.7585 18 6 0.1812 -6.3327 -0.9681 19 6 0.9439 -7.4050 -0.5462 20 35 0.3352 -9.1716 -0.8372 21 6 2.1532 -7.1853 0.0893 22 6 2.5966 -5.8960 0.2994 23 6 1.8321 -4.8141 -0.1263 24 8 2.3068 -3.5598 0.0908 25 1 -0.3634 0.0574 -1.0260 26 1 -0.3633 -0.9173 0.4633 27 1 -0.3633 0.8599 0.5629 28 1 -0.0440 3.0794 -1.4137 29 1 -0.0573 -1.7527 -1.4393 30 1 1.2896 -2.6795 -2.1492 31 1 -1.0618 -3.7445 -0.5287 32 1 -0.6425 -4.1246 -2.2159 33 1 -0.7628 -6.5063 -1.4632 34 1 2.7499 -8.0227 0.4198 35 1 3.5405 -5.7256 0.7959 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182255410.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:02 Heat of formation + Delta-G solvation = -35.214787 kcal Electronic energy + Delta-G solvation = -21249.472941 eV Core-core repulsion = 17873.358666 eV Total energy + Delta-G solvation = -3376.114275 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.026 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.79999 -38.68637 -37.17690 -34.84803 -34.23097 -32.10954 -31.71533 -30.48408 -29.08993 -26.79480 -26.02155 -24.26895 -23.51415 -22.63018 -20.30144 -19.21842 -17.82823 -17.00661 -16.53612 -16.32988 -15.28178 -14.97673 -14.73421 -14.33859 -14.29584 -14.12663 -13.76936 -13.48925 -13.20410 -12.83988 -12.50057 -12.10030 -12.05383 -11.71417 -11.51509 -11.34163 -11.12892 -10.96969 -10.82829 -10.57813 -10.40004 -10.38291 -10.34493 -10.11789 -9.13377 -8.96513 -8.46351 -8.07463 -7.82188 -6.42032 -3.99196 1.10914 1.15932 1.55674 3.08320 3.13927 3.21824 3.30642 3.50570 3.68769 4.09800 4.52867 4.61671 4.73410 4.87708 4.96931 5.02482 5.13873 5.20503 5.29901 5.39190 5.56945 5.65235 5.79546 5.89357 5.93060 5.95627 6.11597 6.15003 6.27335 6.33187 6.54866 6.71732 7.08013 7.47405 7.50542 8.00752 8.36568 9.06465 9.26622 9.81498 10.61453 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.044897 B = 0.002491 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.496905 B =11236.047181 C =11740.011541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.438 5.438 3 C -0.305 4.305 4 H 0.102 0.898 5 C 0.032 3.968 6 N -0.882 5.882 7 Si 0.929 3.071 8 H -0.267 1.267 9 H -0.280 1.280 10 H -0.280 1.280 11 C 0.452 3.548 12 O -0.567 6.567 13 C 0.084 3.916 14 H 0.085 0.915 15 C -0.156 4.156 16 C -0.075 4.075 17 C -0.159 4.159 18 C -0.053 4.053 19 C -0.131 4.131 20 Br -0.062 7.062 21 C -0.059 4.059 22 C -0.146 4.146 23 C 0.161 3.839 24 O -0.281 6.281 25 H 0.065 0.935 26 H 0.026 0.974 27 H 0.072 0.928 28 H 0.268 0.732 29 H 0.104 0.896 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.132 0.868 34 H 0.136 0.864 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.061 -19.148 0.288 20.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.158 5.158 3 C -0.433 4.433 4 H 0.119 0.881 5 C -0.172 4.172 6 N -0.521 5.521 7 Si 0.756 3.244 8 H -0.191 1.191 9 H -0.206 1.206 10 H -0.206 1.206 11 C 0.238 3.762 12 O -0.450 6.450 13 C 0.024 3.976 14 H 0.103 0.897 15 C -0.193 4.193 16 C -0.112 4.112 17 C -0.161 4.161 18 C -0.073 4.073 19 C -0.211 4.211 20 Br 0.022 6.978 21 C -0.079 4.079 22 C -0.165 4.165 23 C 0.113 3.887 24 O -0.193 6.193 25 H 0.083 0.917 26 H 0.045 0.955 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.122 0.878 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.150 0.850 34 H 0.154 0.846 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.629 -19.567 0.147 20.361 hybrid contribution 0.020 1.229 0.006 1.230 sum -5.609 -18.338 0.153 19.177 Atomic orbital electron populations 1.21697 0.81065 0.98864 1.02060 1.43459 1.05518 1.04138 1.62726 1.19741 0.99645 0.83266 1.40616 0.88075 1.25359 0.96494 1.00169 0.95129 1.69977 1.17091 1.29416 1.35655 0.85809 0.79341 0.81053 0.78224 1.19121 1.20640 1.20576 1.19352 0.87971 0.83653 0.85234 1.90563 1.13470 1.86406 1.54558 1.22365 0.90458 0.86245 0.98534 0.89744 1.22358 1.00234 0.99108 0.97642 1.20529 0.97000 0.91530 1.02167 1.19905 0.96949 0.95401 1.03830 1.20796 0.98868 0.90157 0.97468 1.21477 0.99353 0.90476 1.09755 1.96650 1.89169 1.15858 1.96076 1.20810 0.94030 0.96689 0.96377 1.20617 1.01927 0.89834 1.04159 1.18999 0.91962 0.85431 0.92260 1.86141 1.37042 1.11504 1.84568 0.91655 0.95533 0.90958 0.92138 0.87750 0.90034 0.89991 0.89589 0.84968 0.84633 0.84167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.20 7.16 59.84 0.43 2.63 16 2 N -0.44 -10.82 3.02 -122.19 -0.37 -11.19 16 3 C -0.31 -8.27 9.29 -14.93 -0.14 -8.41 16 4 H 0.10 2.90 7.40 -52.48 -0.39 2.51 16 5 C 0.03 0.81 5.13 -17.47 -0.09 0.72 16 6 N -0.88 -22.37 10.59 55.50 0.59 -21.78 16 7 Si 0.93 20.17 29.57 -169.99 -5.03 15.14 16 8 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 9 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 10 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 11 C 0.45 10.98 7.07 -10.98 -0.08 10.90 16 12 O -0.57 -16.16 16.21 -14.22 -0.23 -16.39 16 13 C 0.08 1.57 2.37 -27.67 -0.07 1.51 16 14 H 0.08 1.42 7.17 -51.93 -0.37 1.05 16 15 C -0.16 -2.46 5.18 -26.48 -0.14 -2.60 16 16 C -0.08 -0.93 5.86 -27.81 -0.16 -1.09 16 17 C -0.16 -2.16 5.75 -104.44 -0.60 -2.76 16 18 C -0.05 -0.63 9.41 -39.50 -0.37 -1.00 16 19 C -0.13 -1.54 6.22 -39.55 -0.25 -1.79 16 20 Br -0.06 -0.63 33.70 -68.01 -2.29 -2.93 16 21 C -0.06 -0.69 9.78 -39.64 -0.39 -1.08 16 22 C -0.15 -1.99 9.93 -39.35 -0.39 -2.38 16 23 C 0.16 2.54 6.47 -39.20 -0.25 2.28 16 24 O -0.28 -5.44 9.46 -39.08 -0.37 -5.81 16 25 H 0.07 1.38 6.52 -51.93 -0.34 1.04 16 26 H 0.03 0.44 5.90 -51.93 -0.31 0.14 16 27 H 0.07 1.58 7.12 -51.93 -0.37 1.21 16 28 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 29 H 0.10 1.63 5.19 -51.93 -0.27 1.37 16 30 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 34 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 35 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 309.69 15.07 4.67 4.67 Total: -1.00 -30.35 309.69 -9.24 -39.59 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -3.72 Total: 1.76 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -2.49 Total: -3.06 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: 0.22 Total: -32.97 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.60 Total: -22.20 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.03 Total: 15.14 kcal Atomic # 35 Polarization: -0.63 SS G_CDS: -2.29 Total: -2.93 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.35 -9.24 -39.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182255410.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.374 kcal (2) G-P(sol) polarization free energy of solvation -30.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds