Wall clock time and date at job start Tue Mar 31 2020 22:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37098 * 120.00082 * 2 1 4 4 H 1.08004 * 119.99805 * 157.83580 * 3 2 1 5 5 C 1.38952 * 120.00128 * 337.56378 * 3 2 1 6 6 N 1.31404 * 119.99841 * 348.81866 * 5 3 2 7 7 Si 1.86800 * 119.99953 * 168.82437 * 5 3 2 8 8 H 1.48498 * 109.47503 * 359.97438 * 7 5 3 9 9 H 1.48508 * 109.47085 * 119.99869 * 7 5 3 10 10 H 1.48497 * 109.46892 * 239.99382 * 7 5 3 11 11 C 1.34781 * 120.00052 * 180.02562 * 2 1 3 12 12 O 1.21289 * 120.00035 * 179.97438 * 11 2 1 13 13 C 1.50699 * 119.99767 * 359.97438 * 11 2 1 14 14 H 1.09001 * 109.68219 * 304.47937 * 13 11 2 15 15 C 1.53408 * 109.68156 * 65.00177 * 13 11 2 16 16 C 1.53073 * 108.29891 * 184.43072 * 15 13 11 17 17 C 1.50766 * 109.68072 * 311.78490 * 16 15 13 18 18 C 1.38505 * 118.75516 * 197.82787 * 17 16 15 19 19 C 1.38188 * 120.30819 * 180.16127 * 18 17 16 20 20 Br 1.89101 * 120.01646 * 180.02562 * 19 18 17 21 21 C 1.38367 * 119.96297 * 0.02562 * 19 18 17 22 22 C 1.37958 * 119.94649 * 359.92318 * 21 19 18 23 23 C 1.38371 * 121.40789 * 17.84861 * 17 16 15 24 24 O 1.35864 * 121.79993 * 359.48281 * 23 17 16 25 25 H 1.08996 * 109.47362 * 86.79649 * 1 2 3 26 26 H 1.09000 * 109.46950 * 206.79819 * 1 2 3 27 27 H 1.09005 * 109.47003 * 326.79235 * 1 2 3 28 28 H 0.97001 * 120.00342 * 179.97438 * 6 5 3 29 29 H 1.09005 * 109.69744 * 304.13269 * 15 13 11 30 30 H 1.08996 * 109.70044 * 64.68941 * 15 13 11 31 31 H 1.08998 * 109.43511 * 71.84893 * 16 15 13 32 32 H 1.09000 * 109.43849 * 191.76269 * 16 15 13 33 33 H 1.08003 * 119.84742 * 0.13732 * 18 17 16 34 34 H 1.08000 * 120.01999 * 179.97438 * 21 19 18 35 35 H 1.08002 * 119.88641 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1707 1.2218 0.3529 5 6 1.5346 2.3451 -0.4593 6 7 0.3861 2.2712 -1.0934 7 14 2.3395 4.0068 -0.1753 8 1 3.6173 3.8191 0.5577 9 1 2.6094 4.6561 -1.4833 10 1 1.4313 4.8662 0.6258 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0010 13 6 1.3853 -2.4723 -0.0005 14 1 0.6989 -2.4999 0.8458 15 6 0.5979 -2.6142 -1.3094 16 6 -0.2404 -3.8926 -1.2298 17 6 0.6214 -5.0363 -0.7585 18 6 0.1812 -6.3327 -0.9681 19 6 0.9439 -7.4050 -0.5462 20 35 0.3352 -9.1716 -0.8372 21 6 2.1532 -7.1853 0.0893 22 6 2.5966 -5.8960 0.2994 23 6 1.8321 -4.8141 -0.1263 24 8 2.3068 -3.5598 0.0908 25 1 -0.3634 0.0574 -1.0260 26 1 -0.3633 -0.9173 0.4633 27 1 -0.3633 0.8599 0.5629 28 1 -0.0440 3.0794 -1.4137 29 1 -0.0573 -1.7527 -1.4393 30 1 1.2896 -2.6795 -2.1492 31 1 -1.0618 -3.7445 -0.5287 32 1 -0.6425 -4.1246 -2.2159 33 1 -0.7628 -6.5063 -1.4632 34 1 2.7499 -8.0227 0.4198 35 1 3.5405 -5.7256 0.7959 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182255410.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:01 Heat of formation + Delta-G solvation = -51.922119 kcal Electronic energy + Delta-G solvation = -21250.197425 eV Core-core repulsion = 17873.358666 eV Total energy + Delta-G solvation = -3376.838759 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.026 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.04407 -40.30422 -38.47923 -36.76532 -35.45419 -33.75316 -32.93130 -31.70382 -30.11237 -28.42739 -27.56902 -25.95191 -24.71901 -23.63540 -21.73088 -20.65271 -19.14255 -18.90429 -17.98369 -17.66578 -16.86770 -16.28246 -16.22216 -15.83673 -15.71861 -15.38601 -15.06511 -14.78821 -14.45437 -14.20974 -13.80580 -13.63732 -13.27479 -13.16321 -13.11189 -12.84943 -12.66904 -12.44374 -12.27479 -12.13409 -12.02156 -11.66985 -11.24891 -11.19321 -11.04514 -10.36322 -9.91015 -9.77474 -9.14392 -8.38084 -6.04390 0.09288 0.19622 0.64956 1.33669 1.40977 1.53485 1.84110 1.85597 2.32169 2.50843 3.02026 3.08791 3.51082 3.62378 3.63651 3.81399 3.86695 4.08116 4.14575 4.22658 4.40736 4.53665 4.55810 4.81004 4.84956 4.91518 4.95046 4.99539 5.09714 5.15687 5.30002 5.37691 5.41430 5.55542 5.99307 6.29800 6.46558 7.09561 7.33913 7.89995 8.63190 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.044897 B = 0.002491 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.496905 B =11236.047181 C =11740.011541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.448 5.448 3 C -0.347 4.347 4 H 0.069 0.931 5 C 0.005 3.995 6 N -0.888 5.888 7 Si 0.990 3.010 8 H -0.277 1.277 9 H -0.274 1.274 10 H -0.262 1.262 11 C 0.437 3.563 12 O -0.625 6.625 13 C 0.094 3.906 14 H 0.107 0.893 15 C -0.148 4.148 16 C -0.067 4.067 17 C -0.160 4.160 18 C -0.049 4.049 19 C -0.132 4.132 20 Br -0.042 7.042 21 C -0.055 4.055 22 C -0.155 4.155 23 C 0.124 3.876 24 O -0.316 6.316 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.277 0.723 29 H 0.107 0.893 30 H 0.059 0.941 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.159 0.841 34 H 0.159 0.841 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.462 -20.566 -0.124 22.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.167 5.167 3 C -0.475 4.475 4 H 0.087 0.913 5 C -0.198 4.198 6 N -0.526 5.526 7 Si 0.813 3.187 8 H -0.202 1.202 9 H -0.200 1.200 10 H -0.187 1.187 11 C 0.225 3.775 12 O -0.512 6.512 13 C 0.034 3.966 14 H 0.125 0.875 15 C -0.186 4.186 16 C -0.104 4.104 17 C -0.162 4.162 18 C -0.069 4.069 19 C -0.212 4.212 20 Br 0.043 6.957 21 C -0.074 4.074 22 C -0.175 4.175 23 C 0.078 3.922 24 O -0.230 6.230 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.125 0.875 30 H 0.078 0.922 31 H 0.126 0.874 32 H 0.131 0.869 33 H 0.177 0.823 34 H 0.176 0.824 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.092 -21.003 -0.272 22.510 hybrid contribution 0.767 1.545 0.107 1.728 sum -7.325 -19.458 -0.165 20.792 Atomic orbital electron populations 1.21718 0.78682 1.00378 1.02050 1.43694 1.07058 1.03803 1.62109 1.19642 0.99303 0.85372 1.43196 0.91271 1.26044 0.96970 1.02611 0.94178 1.70023 1.17256 1.30653 1.34679 0.84931 0.78303 0.77126 0.78311 1.20174 1.19955 1.18689 1.20351 0.87773 0.85524 0.83842 1.90504 1.16163 1.87622 1.56946 1.22149 0.89778 0.83630 1.01000 0.87535 1.22293 0.99824 1.01433 0.95020 1.20588 0.96553 0.88837 1.04421 1.20065 0.96216 0.96675 1.03254 1.21049 0.99707 0.89231 0.96910 1.21732 0.99130 0.91643 1.08657 1.96685 1.88879 1.14194 1.95927 1.21044 0.94310 0.96379 0.95711 1.20767 1.01984 0.90328 1.04392 1.19338 0.93870 0.84199 0.94747 1.86073 1.38165 1.12916 1.85801 0.91958 0.91286 0.92422 0.91348 0.87512 0.92223 0.87413 0.86890 0.82337 0.82352 0.84318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.67 7.16 127.77 0.91 5.58 16 2 N -0.45 -22.79 3.02 -658.89 -1.99 -24.78 16 3 C -0.35 -19.63 9.29 84.04 0.78 -18.85 16 4 H 0.07 4.25 7.40 -2.91 -0.02 4.23 16 5 C 0.00 0.25 5.13 84.93 0.44 0.69 16 6 N -0.89 -44.67 10.59 21.66 0.23 -44.44 16 7 Si 0.99 41.57 29.57 68.60 2.03 43.60 16 8 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 9 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 10 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 11 C 0.44 22.18 7.07 87.66 0.62 22.80 16 12 O -0.63 -38.05 16.21 15.85 0.26 -37.79 16 13 C 0.09 3.56 2.37 29.98 0.07 3.63 16 14 H 0.11 3.48 7.17 -2.39 -0.02 3.46 16 15 C -0.15 -4.55 5.18 30.76 0.16 -4.39 16 16 C -0.07 -1.45 5.86 29.89 0.18 -1.28 16 17 C -0.16 -4.01 5.75 -19.75 -0.11 -4.12 16 18 C -0.05 -1.01 9.41 22.32 0.21 -0.80 16 19 C -0.13 -2.72 6.22 22.29 0.14 -2.59 16 20 Br -0.04 -0.72 33.70 -20.37 -0.69 -1.41 16 21 C -0.05 -1.18 9.78 22.23 0.22 -0.96 16 22 C -0.16 -4.18 9.93 22.42 0.22 -3.96 16 23 C 0.12 3.89 6.47 22.52 0.15 4.03 16 24 O -0.32 -12.64 9.46 -73.11 -0.69 -13.33 16 25 H 0.06 2.58 6.52 -2.39 -0.02 2.56 16 26 H 0.07 2.19 5.90 -2.39 -0.01 2.17 16 27 H 0.06 2.50 7.12 -2.38 -0.02 2.49 16 28 H 0.28 12.93 8.31 -92.71 -0.77 12.16 16 29 H 0.11 3.19 5.19 -2.38 -0.01 3.18 16 30 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 34 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 35 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -69.45 309.69 4.25 -65.21 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 1.12 Total: 13.16 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: 3.98 Total: -0.21 kcal Atomic # 7 Polarization: -67.46 SS G_CDS: -1.76 Total: -69.22 kcal Atomic # 8 Polarization: -50.69 SS G_CDS: -0.44 Total: -51.12 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Atomic # 35 Polarization: -0.72 SS G_CDS: -0.69 Total: -1.41 kcal Total: -69.45 4.25 -65.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182255410.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.284 kcal (2) G-P(sol) polarization free energy of solvation -69.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds