Wall clock time and date at job start Tue Mar 31 2020 22:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 11 11 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 12 12 C 1.34777 * 120.00015 * 204.99781 * 11 9 7 13 13 O 1.21585 * 120.00300 * 0.02562 * 12 11 9 14 14 N 1.34779 * 119.99711 * 180.02562 * 12 11 9 15 15 N 1.40099 * 120.00494 * 0.02562 * 14 12 11 16 16 C 1.34769 * 120.00374 * 180.02562 * 15 14 12 17 17 O 1.21570 * 120.00288 * 359.97438 * 16 15 14 18 18 C 1.47761 * 120.00276 * 179.97438 * 16 15 14 19 19 C 1.39350 * 124.11854 * 179.72183 * 18 16 15 20 20 N 1.30089 * 112.14492 * 179.82284 * 19 18 16 21 21 S 1.55926 * 108.75388 * 0.42498 * 20 19 18 22 22 N 1.31491 * 124.11147 * 0.02562 * 18 16 15 23 23 C 1.53000 * 109.47174 * 300.00082 * 9 7 2 24 24 F 1.39903 * 109.47440 * 60.00123 * 23 9 7 25 25 F 1.39899 * 109.47255 * 180.02562 * 23 9 7 26 26 F 1.39900 * 109.47102 * 299.99874 * 23 9 7 27 27 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 28 28 H 0.97005 * 119.99880 * 25.00131 * 11 9 7 29 29 H 0.97005 * 119.99633 * 180.02562 * 14 12 11 30 30 H 0.97001 * 119.99748 * 359.97438 * 15 14 12 31 31 H 1.08003 * 123.92600 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6240 -2.5568 -0.8903 11 7 2.2030 -3.6127 -0.0005 12 6 1.8368 -4.8123 -0.4938 13 8 0.7166 -4.9703 -0.9392 14 7 2.7125 -5.8369 -0.4933 15 7 4.0032 -5.6551 0.0204 16 6 4.8790 -6.6794 0.0204 17 8 4.5489 -7.7614 -0.4249 18 6 6.2404 -6.4876 0.5617 19 6 7.2107 -7.4866 0.6091 20 7 8.3259 -7.0629 1.1278 21 16 8.1574 -5.5640 1.5230 22 7 6.6820 -5.3548 1.0625 23 6 0.3719 -2.5805 1.2490 24 9 -0.5373 -1.5171 1.2496 25 9 -0.3272 -3.7922 1.2493 26 9 1.1766 -2.5067 2.3910 27 1 -0.4850 0.8401 0.0004 28 1 3.0969 -3.4866 0.3545 29 1 2.4491 -6.7002 -0.8486 30 1 4.2667 -4.7917 0.3754 31 1 7.0556 -8.4948 0.2541 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209330481.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:19 Heat of formation + Delta-G solvation = -91.678423 kcal Electronic energy + Delta-G solvation = -27390.629314 eV Core-core repulsion = 22615.433651 eV Total energy + Delta-G solvation = -4775.195662 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 339.040 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.40452 -46.05650 -45.66921 -41.53805 -40.08726 -38.83504 -35.73847 -34.87974 -34.08292 -32.61163 -30.99352 -28.35782 -27.63630 -24.65392 -23.74585 -22.29141 -21.08743 -20.44518 -19.85100 -19.33103 -17.98676 -17.28325 -16.89236 -16.70749 -16.59315 -16.50413 -15.80682 -15.44498 -15.26406 -14.99389 -14.79749 -14.38102 -14.22372 -13.38030 -12.97470 -12.65680 -12.61303 -12.45280 -12.34323 -12.04978 -11.88486 -11.86442 -11.67602 -11.47870 -11.44798 -11.23325 -10.93460 -10.88492 -10.72009 -10.47082 -9.95550 -9.78547 -9.64688 -8.82702 -8.60427 -8.23650 -6.30661 -4.55705 0.00124 0.94841 1.11908 1.19016 1.76851 2.66877 3.15227 3.19395 3.21679 3.32669 3.46436 3.89798 4.14139 4.22580 4.50160 4.67346 4.86496 5.01062 5.08458 5.73646 5.79576 5.91050 6.10939 6.32014 6.46211 6.87657 7.03183 7.24986 7.35467 7.54613 7.70308 8.34711 8.45376 8.80570 9.12426 10.60863 Molecular weight = 339.04amu Principal moments of inertia in cm(-1) A = 0.013531 B = 0.003588 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.875962 B = 7802.949997 C = 9101.006459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.067 3.933 3 Si 0.917 3.083 4 H -0.283 1.283 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.555 4.555 8 H 0.077 0.923 9 C 0.261 3.739 10 H 0.090 0.910 11 N -0.722 5.722 12 C 0.708 3.292 13 O -0.556 6.556 14 N -0.534 5.534 15 N -0.500 5.500 16 C 0.606 3.394 17 O -0.522 6.522 18 C 0.017 3.983 19 C 0.096 3.904 20 N -0.580 5.580 21 S 0.741 5.259 22 N -0.547 5.547 23 C 0.415 3.585 24 F -0.135 7.135 25 F -0.216 7.216 26 F -0.209 7.209 27 H 0.270 0.730 28 H 0.390 0.610 29 H 0.440 0.560 30 H 0.431 0.569 31 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.183 -8.660 2.853 17.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.143 4.143 3 Si 0.743 3.257 4 H -0.208 1.208 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.592 4.592 8 H 0.096 0.904 9 C 0.155 3.845 10 H 0.107 0.893 11 N -0.376 5.376 12 C 0.408 3.592 13 O -0.428 6.428 14 N -0.294 5.294 15 N -0.251 5.251 16 C 0.386 3.614 17 O -0.396 6.396 18 C -0.159 4.159 19 C -0.098 4.098 20 N -0.420 5.420 21 S 0.782 5.218 22 N -0.398 5.398 23 C 0.359 3.641 24 F -0.117 7.117 25 F -0.198 7.198 26 F -0.191 7.191 27 H 0.081 0.919 28 H 0.225 0.775 29 H 0.286 0.714 30 H 0.275 0.725 31 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 15.210 -7.885 3.148 17.419 hybrid contribution -0.420 -0.213 -0.180 0.504 sum 14.790 -8.098 2.968 17.121 Atomic orbital electron populations 1.70384 1.05865 1.27657 1.43125 1.25069 0.95168 1.00111 0.93935 0.86244 0.79329 0.81200 0.78916 1.20820 1.19788 1.19769 1.20797 0.93743 0.87925 1.56723 0.90450 1.19727 0.88142 0.84682 0.91974 0.89272 1.45369 1.17436 1.09807 1.65032 1.15891 0.83360 0.80277 0.79682 1.91044 1.17523 1.81179 1.53075 1.44792 1.01017 1.15809 1.67790 1.44550 1.04170 1.15161 1.61175 1.16548 0.81561 0.83685 0.79636 1.90869 1.76964 1.24590 1.47132 1.22105 0.98441 0.89111 1.06195 1.23717 0.85439 1.02969 0.97655 1.72282 1.30118 1.18497 1.21153 1.79183 1.01006 1.00621 1.40979 1.72428 1.19080 1.30333 1.17970 1.23148 0.80938 0.72914 0.87113 1.93411 1.68328 1.53728 1.96187 1.93079 1.81475 1.48297 1.96962 1.92990 1.74383 1.96190 1.55547 0.91919 0.77518 0.71448 0.72524 0.76678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.22 9.50 55.43 0.53 -21.69 16 2 C 0.07 1.67 5.20 -17.82 -0.09 1.57 16 3 Si 0.92 19.35 29.54 -169.99 -5.02 14.33 16 4 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.55 -13.50 8.46 -34.44 -0.29 -13.79 16 8 H 0.08 1.75 7.74 -52.49 -0.41 1.35 16 9 C 0.26 6.22 2.21 -69.09 -0.15 6.06 16 10 H 0.09 2.38 7.58 -51.93 -0.39 1.98 16 11 N -0.72 -14.10 4.95 -59.82 -0.30 -14.39 16 12 C 0.71 13.69 8.21 -86.92 -0.71 12.98 16 13 O -0.56 -12.82 15.75 5.29 0.08 -12.74 16 14 N -0.53 -8.17 6.26 27.63 0.17 -8.00 16 15 N -0.50 -6.41 6.25 30.51 0.19 -6.22 16 16 C 0.61 7.33 7.94 -12.37 -0.10 7.23 16 17 O -0.52 -7.25 16.64 5.30 0.09 -7.16 16 18 C 0.02 0.17 6.81 -83.71 -0.57 -0.40 16 19 C 0.10 0.81 11.22 -17.88 -0.20 0.61 16 20 N -0.58 -4.90 11.41 19.43 0.22 -4.68 16 21 S 0.74 5.07 23.69 -107.50 -2.55 2.52 16 22 N -0.55 -5.17 11.00 23.18 0.26 -4.91 16 23 C 0.42 10.34 2.81 37.16 0.10 10.45 16 24 F -0.14 -3.65 12.91 2.25 0.03 -3.62 16 25 F -0.22 -5.38 15.67 2.25 0.04 -5.35 16 26 F -0.21 -4.99 16.94 2.25 0.04 -4.95 16 27 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 28 H 0.39 6.51 6.46 -40.82 -0.26 6.25 16 29 H 0.44 6.39 8.10 -182.59 -1.48 4.91 16 30 H 0.43 5.14 6.29 -182.60 -1.15 4.00 16 31 H 0.22 1.39 8.06 -52.48 -0.42 0.97 16 LS Contribution 307.24 15.07 4.63 4.63 Total: -1.00 -30.84 307.24 -6.85 -37.70 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -3.25 Total: 9.82 kcal Atomic # 6 Polarization: 26.73 SS G_CDS: -2.01 Total: 24.72 kcal Atomic # 7 Polarization: -60.97 SS G_CDS: 1.07 Total: -59.90 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: 0.17 Total: -19.90 kcal Atomic # 9 Polarization: -14.02 SS G_CDS: 0.10 Total: -13.92 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.33 kcal Atomic # 16 Polarization: 5.07 SS G_CDS: -2.55 Total: 2.52 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.84 -6.85 -37.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209330481.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.983 kcal (2) G-P(sol) polarization free energy of solvation -30.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds