Wall clock time and date at job start Tue Mar 31 2020 22:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 11 11 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 12 12 C 1.34777 * 120.00015 * 204.99781 * 11 9 7 13 13 O 1.21585 * 120.00300 * 0.02562 * 12 11 9 14 14 N 1.34779 * 119.99711 * 180.02562 * 12 11 9 15 15 N 1.40099 * 120.00494 * 0.02562 * 14 12 11 16 16 C 1.34769 * 120.00374 * 180.02562 * 15 14 12 17 17 O 1.21570 * 120.00288 * 359.97438 * 16 15 14 18 18 C 1.47761 * 120.00276 * 179.97438 * 16 15 14 19 19 C 1.39350 * 124.11854 * 179.72183 * 18 16 15 20 20 N 1.30089 * 112.14492 * 179.82284 * 19 18 16 21 21 S 1.55926 * 108.75388 * 0.42498 * 20 19 18 22 22 N 1.31491 * 124.11147 * 0.02562 * 18 16 15 23 23 C 1.53000 * 109.47174 * 300.00082 * 9 7 2 24 24 F 1.39903 * 109.47440 * 60.00123 * 23 9 7 25 25 F 1.39899 * 109.47255 * 180.02562 * 23 9 7 26 26 F 1.39900 * 109.47102 * 299.99874 * 23 9 7 27 27 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 28 28 H 0.97005 * 119.99880 * 25.00131 * 11 9 7 29 29 H 0.97005 * 119.99633 * 180.02562 * 14 12 11 30 30 H 0.97001 * 119.99748 * 359.97438 * 15 14 12 31 31 H 1.08003 * 123.92600 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6240 -2.5568 -0.8903 11 7 2.2030 -3.6127 -0.0005 12 6 1.8368 -4.8123 -0.4938 13 8 0.7166 -4.9703 -0.9392 14 7 2.7125 -5.8369 -0.4933 15 7 4.0032 -5.6551 0.0204 16 6 4.8790 -6.6794 0.0204 17 8 4.5489 -7.7614 -0.4249 18 6 6.2404 -6.4876 0.5617 19 6 7.2107 -7.4866 0.6091 20 7 8.3259 -7.0629 1.1278 21 16 8.1574 -5.5640 1.5230 22 7 6.6820 -5.3548 1.0625 23 6 0.3719 -2.5805 1.2490 24 9 -0.5373 -1.5171 1.2496 25 9 -0.3272 -3.7922 1.2493 26 9 1.1766 -2.5067 2.3910 27 1 -0.4850 0.8401 0.0004 28 1 3.0969 -3.4866 0.3545 29 1 2.4491 -6.7002 -0.8486 30 1 4.2667 -4.7917 0.3754 31 1 7.0556 -8.4948 0.2541 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209330481.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:19 Heat of formation + Delta-G solvation = -116.274479 kcal Electronic energy + Delta-G solvation = -27391.695879 eV Core-core repulsion = 22615.433651 eV Total energy + Delta-G solvation = -4776.262227 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 339.040 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.40434 -48.03776 -47.71300 -42.33841 -41.38100 -40.02462 -36.99029 -36.65035 -34.81894 -34.41266 -32.21548 -30.10109 -28.45976 -26.59342 -24.60901 -23.98820 -22.09103 -22.04142 -20.78439 -20.46150 -19.11656 -19.00326 -18.75901 -18.61783 -18.12134 -17.35453 -17.23712 -16.82697 -16.46371 -16.37018 -16.20367 -15.60533 -15.49026 -15.10378 -14.94794 -14.56757 -14.44385 -14.27774 -14.01795 -13.87769 -13.29858 -13.12058 -12.87163 -12.65267 -12.59133 -12.56632 -12.29195 -12.24165 -12.11042 -11.80480 -11.62238 -11.43590 -10.67587 -10.34059 -10.25907 -9.52710 -8.19975 -6.51256 -0.70175 0.24816 0.38039 0.52378 0.74069 1.50071 1.51859 1.60299 1.68523 1.84370 1.97887 2.39225 2.54322 2.95832 3.02566 3.46402 3.71566 3.80788 3.88309 3.98880 4.18095 4.50604 4.77394 5.08222 5.21063 5.30271 5.39474 5.63685 5.66728 6.07626 6.43540 6.53995 7.03287 7.18901 7.31795 8.72477 Molecular weight = 339.04amu Principal moments of inertia in cm(-1) A = 0.013531 B = 0.003588 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.875962 B = 7802.949997 C = 9101.006459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.018 3.982 3 Si 0.983 3.017 4 H -0.287 1.287 5 H -0.264 1.264 6 H -0.263 1.263 7 C -0.562 4.562 8 H 0.095 0.905 9 C 0.268 3.732 10 H 0.056 0.944 11 N -0.714 5.714 12 C 0.710 3.290 13 O -0.598 6.598 14 N -0.522 5.522 15 N -0.500 5.500 16 C 0.613 3.387 17 O -0.540 6.540 18 C 0.000 4.000 19 C 0.100 3.900 20 N -0.598 5.598 21 S 0.817 5.183 22 N -0.569 5.569 23 C 0.411 3.589 24 F -0.149 7.149 25 F -0.219 7.219 26 F -0.202 7.202 27 H 0.269 0.731 28 H 0.406 0.594 29 H 0.445 0.555 30 H 0.436 0.564 31 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.996 -8.355 3.488 20.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.188 4.188 3 Si 0.807 3.193 4 H -0.212 1.212 5 H -0.189 1.189 6 H -0.187 1.187 7 C -0.598 4.598 8 H 0.113 0.887 9 C 0.161 3.839 10 H 0.073 0.927 11 N -0.369 5.369 12 C 0.409 3.591 13 O -0.473 6.473 14 N -0.279 5.279 15 N -0.251 5.251 16 C 0.395 3.605 17 O -0.415 6.415 18 C -0.173 4.173 19 C -0.092 4.092 20 N -0.440 5.440 21 S 0.858 5.142 22 N -0.422 5.422 23 C 0.355 3.645 24 F -0.130 7.130 25 F -0.201 7.201 26 F -0.184 7.184 27 H 0.079 0.921 28 H 0.243 0.757 29 H 0.292 0.708 30 H 0.281 0.719 31 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 18.085 -7.643 3.787 19.995 hybrid contribution -1.150 -0.352 -0.311 1.242 sum 16.934 -7.994 3.476 19.046 Atomic orbital electron populations 1.70518 1.07481 1.28316 1.44325 1.25964 0.95854 1.03577 0.93399 0.85211 0.77988 0.76757 0.79387 1.21237 1.18906 1.18739 1.21155 0.94619 0.87962 1.56094 0.88688 1.19339 0.88308 0.86153 0.90122 0.92668 1.45039 1.17481 1.09100 1.65325 1.15856 0.83268 0.80617 0.79313 1.91015 1.19598 1.82043 1.54674 1.44368 1.01889 1.14794 1.66866 1.44615 1.02923 1.15901 1.61694 1.16832 0.82044 0.82945 0.78713 1.90859 1.77578 1.25252 1.47845 1.21734 0.97558 0.89969 1.08078 1.23833 0.84936 1.03288 0.97108 1.72229 1.30244 1.19791 1.21771 1.78934 0.98435 0.98939 1.37845 1.72242 1.20979 1.30640 1.18356 1.23342 0.80925 0.72466 0.87772 1.93384 1.68902 1.54430 1.96301 1.93071 1.81618 1.48351 1.97010 1.92990 1.74073 1.96148 1.55211 0.92097 0.75724 0.70803 0.71949 0.75309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -46.78 9.50 21.45 0.20 -46.57 16 2 C 0.02 0.88 5.20 84.66 0.44 1.32 16 3 Si 0.98 38.73 29.54 68.60 2.03 40.76 16 4 H -0.29 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 6 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 7 C -0.56 -26.90 8.46 25.60 0.22 -26.68 16 8 H 0.10 4.11 7.74 -2.91 -0.02 4.09 16 9 C 0.27 12.91 2.21 44.24 0.10 13.00 16 10 H 0.06 3.05 7.58 -2.39 -0.02 3.03 16 11 N -0.71 -27.64 4.95 -461.42 -2.28 -29.92 16 12 C 0.71 27.53 8.21 179.05 1.47 29.00 16 13 O -0.60 -28.18 15.75 -3.98 -0.06 -28.25 16 14 N -0.52 -15.70 6.26 -184.75 -1.16 -16.86 16 15 N -0.50 -12.24 6.25 -175.66 -1.10 -13.34 16 16 C 0.61 14.07 7.94 86.76 0.69 14.76 16 17 O -0.54 -14.48 16.64 -3.94 -0.07 -14.55 16 18 C 0.00 0.00 6.81 41.98 0.29 0.29 16 19 C 0.10 1.49 11.22 85.22 0.96 2.44 16 20 N -0.60 -8.60 11.41 -92.46 -1.05 -9.65 16 21 S 0.82 8.84 23.69 -56.49 -1.34 7.50 16 22 N -0.57 -9.42 11.00 -80.59 -0.89 -10.31 16 23 C 0.41 20.67 2.81 71.98 0.20 20.88 16 24 F -0.15 -8.17 12.91 44.97 0.58 -7.59 16 25 F -0.22 -11.04 15.67 44.97 0.70 -10.34 16 26 F -0.20 -9.54 16.94 44.97 0.76 -8.78 16 27 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 28 H 0.41 13.03 6.46 -92.70 -0.60 12.43 16 29 H 0.45 12.80 8.10 -213.32 -1.73 11.07 16 30 H 0.44 9.76 6.29 -213.32 -1.34 8.42 16 31 H 0.23 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -65.80 307.24 -1.69 -67.50 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: -2.38 Total: 25.39 kcal Atomic # 6 Polarization: 50.66 SS G_CDS: 4.36 Total: 55.01 kcal Atomic # 7 Polarization: -120.38 SS G_CDS: -6.28 Total: -126.66 kcal Atomic # 8 Polarization: -42.67 SS G_CDS: -0.13 Total: -42.80 kcal Atomic # 9 Polarization: -28.75 SS G_CDS: 2.05 Total: -26.70 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 2.03 Total: 40.76 kcal Atomic # 16 Polarization: 8.84 SS G_CDS: -1.34 Total: 7.50 kcal Total: -65.80 -1.69 -67.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209330481.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.778 kcal (2) G-P(sol) polarization free energy of solvation -65.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds