Wall clock time and date at job start Tue Mar 31 2020 22:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86792 * 120.00121 * 2 1 4 4 H 1.48507 * 109.46965 * 265.16790 * 3 2 1 5 5 H 1.48495 * 109.47231 * 25.16978 * 3 2 1 6 6 H 1.48503 * 109.47314 * 145.17348 * 3 2 1 7 7 C 1.37877 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00234 * 353.93746 * 7 2 1 9 9 C 1.50701 * 120.00354 * 173.94199 * 7 2 1 10 10 H 1.09004 * 109.46656 * 56.78777 * 9 7 2 11 11 N 1.46503 * 109.47088 * 296.79256 * 9 7 2 12 12 C 1.34772 * 120.00384 * 154.99310 * 11 9 7 13 13 O 1.21591 * 119.99584 * 0.02562 * 12 11 9 14 14 N 1.34777 * 120.00017 * 179.97438 * 12 11 9 15 15 N 1.40096 * 120.00118 * 0.02562 * 14 12 11 16 16 C 1.34777 * 120.00118 * 179.97438 * 15 14 12 17 17 O 1.21574 * 119.99876 * 0.02562 * 16 15 14 18 18 C 1.47754 * 120.00208 * 180.27846 * 16 15 14 19 19 C 1.39352 * 124.11483 * 179.44870 * 18 16 15 20 20 N 1.30092 * 112.13845 * 179.81987 * 19 18 16 21 21 S 1.55918 * 108.75943 * 0.42644 * 20 19 18 22 22 N 1.31490 * 124.11238 * 359.74956 * 18 16 15 23 23 C 1.52998 * 109.47787 * 176.79024 * 9 7 2 24 24 F 1.39890 * 109.47211 * 185.25025 * 23 9 7 25 25 F 1.39901 * 109.46659 * 305.25413 * 23 9 7 26 26 F 1.39905 * 109.47063 * 65.24570 * 23 9 7 27 27 H 0.97000 * 119.99625 * 359.97438 * 1 2 3 28 28 H 0.97005 * 119.99249 * 334.99873 * 11 9 7 29 29 H 0.97002 * 119.99642 * 180.02562 * 14 12 11 30 30 H 0.97002 * 120.00240 * 0.02562 * 15 14 12 31 31 H 1.07995 * 123.92802 * 0.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.5988 1.9873 -1.3952 5 1 1.3994 2.6799 0.5954 6 1 3.4920 1.4717 0.7996 7 6 2.0045 -1.1941 -0.0005 8 1 1.4690 -2.1268 0.0978 9 6 3.5052 -1.1978 -0.1383 10 1 3.9442 -0.5916 0.6541 11 7 3.8774 -0.6418 -1.4416 12 6 5.0900 -0.0793 -1.6129 13 8 5.8754 -0.0337 -0.6858 14 7 5.4325 0.4318 -2.8120 15 7 4.5278 0.3788 -3.8804 16 6 4.8701 0.8903 -5.0794 17 8 5.9642 1.3973 -5.2340 18 6 3.9136 0.8399 -6.2044 19 6 4.1731 1.3514 -7.4744 20 7 3.1715 1.1787 -8.2865 21 16 2.0222 0.4571 -7.5189 22 7 2.7117 0.3120 -6.1275 23 6 4.0240 -2.6330 -0.0292 24 9 5.4228 -2.6251 -0.0369 25 9 3.5673 -3.2045 1.1633 26 9 3.5558 -3.3818 -1.1143 27 1 -0.4849 0.8401 0.0004 28 1 3.2508 -0.6785 -2.1812 29 1 6.3055 0.8363 -2.9354 30 1 3.6547 -0.0254 -3.7569 31 1 5.0992 1.8320 -7.7530 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209330482.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:22 Heat of formation + Delta-G solvation = -135.776153 kcal Electronic energy + Delta-G solvation = -27630.302918 eV Core-core repulsion = 22853.195035 eV Total energy + Delta-G solvation = -4777.107883 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 339.040 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.88335 -48.38931 -48.36458 -42.37862 -41.46700 -40.08695 -37.04632 -36.85800 -34.84786 -34.42622 -32.33250 -30.66307 -28.50530 -26.96295 -24.63273 -23.81441 -22.21428 -22.06576 -20.78861 -20.52340 -19.71209 -19.37518 -19.05116 -18.62633 -18.37028 -17.78510 -17.36310 -16.81480 -16.50878 -16.34859 -16.30306 -15.66499 -15.57153 -15.28722 -15.24821 -14.88582 -14.82847 -14.65170 -14.56219 -14.49841 -13.74599 -13.32627 -13.08679 -12.80004 -12.62378 -12.53586 -12.32570 -12.13864 -12.12512 -11.98969 -11.83659 -11.49418 -11.01840 -10.45964 -10.31113 -9.58770 -8.55510 -6.72795 -0.73374 0.21786 0.34720 0.48878 0.69982 1.20859 1.32038 1.42150 1.59901 1.70632 1.87707 2.11456 2.17691 2.85662 3.00370 3.14813 3.36633 3.42152 3.48830 3.82141 3.96583 4.42350 4.47673 4.87635 5.03427 5.14875 5.28010 5.44351 5.87231 6.02006 6.37343 6.42909 6.94570 6.97335 7.22129 8.56124 Molecular weight = 339.04amu Principal moments of inertia in cm(-1) A = 0.012498 B = 0.004159 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.828260 B = 6731.218088 C = 7286.185987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.070 3.930 3 Si 0.922 3.078 4 H -0.256 1.256 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.537 4.537 8 H 0.071 0.929 9 C 0.225 3.775 10 H 0.085 0.915 11 N -0.726 5.726 12 C 0.702 3.298 13 O -0.592 6.592 14 N -0.523 5.523 15 N -0.504 5.504 16 C 0.614 3.386 17 O -0.537 6.537 18 C -0.002 4.002 19 C 0.101 3.899 20 N -0.596 5.596 21 S 0.816 5.184 22 N -0.572 5.572 23 C 0.445 3.555 24 F -0.190 7.190 25 F -0.184 7.184 26 F -0.185 7.185 27 H 0.280 0.720 28 H 0.403 0.597 29 H 0.445 0.555 30 H 0.435 0.565 31 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.163 2.242 -15.942 16.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.747 3.253 4 H -0.181 1.181 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.575 4.575 8 H 0.089 0.911 9 C 0.120 3.880 10 H 0.102 0.898 11 N -0.385 5.385 12 C 0.402 3.598 13 O -0.467 6.467 14 N -0.281 5.281 15 N -0.256 5.256 16 C 0.395 3.605 17 O -0.412 6.412 18 C -0.175 4.175 19 C -0.090 4.090 20 N -0.438 5.438 21 S 0.857 5.143 22 N -0.425 5.425 23 C 0.389 3.611 24 F -0.171 7.171 25 F -0.166 7.166 26 F -0.166 7.166 27 H 0.090 0.910 28 H 0.241 0.759 29 H 0.293 0.707 30 H 0.279 0.721 31 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 2.324 2.035 -15.958 16.255 hybrid contribution 1.519 0.844 0.546 1.821 sum 3.843 2.879 -15.412 16.143 Atomic orbital electron populations 1.69930 1.07489 1.29331 1.45876 1.25358 0.95099 1.01320 0.91979 0.86105 0.79080 0.79977 0.80151 1.18088 1.20901 1.19244 1.20722 0.87402 0.95665 1.53700 0.91078 1.19909 0.97252 0.85748 0.85104 0.89793 1.46574 1.14788 1.61647 1.15441 1.16154 0.83239 0.78686 0.81692 1.90999 1.52138 1.64970 1.38604 1.44468 1.15835 1.65911 1.01879 1.44689 1.15352 1.61411 1.04119 1.16828 0.85722 0.78134 0.79796 1.90850 1.21930 1.45872 1.82571 1.21787 0.91923 1.06827 0.97005 1.23843 1.00112 0.98655 0.86414 1.72238 1.09317 1.23756 1.38509 1.78957 1.18183 1.32313 0.84815 1.72261 1.12405 1.23735 1.34146 1.21290 0.74734 0.91773 0.73289 1.93161 1.30635 1.97101 1.96210 1.93112 1.88937 1.86791 1.47719 1.93094 1.88489 1.79410 1.55633 0.90972 0.75911 0.70746 0.72104 0.75092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.85 13.96 21.45 0.30 -46.55 16 2 C 0.07 3.44 5.46 84.65 0.46 3.90 16 3 Si 0.92 39.80 26.14 68.60 1.79 41.59 16 4 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 6 H -0.27 -12.07 6.55 99.48 0.65 -11.41 16 7 C -0.54 -26.26 8.64 25.60 0.22 -26.04 16 8 H 0.07 3.84 7.91 -2.91 -0.02 3.82 16 9 C 0.22 9.83 1.41 44.24 0.06 9.89 16 10 H 0.08 3.92 6.29 -2.39 -0.01 3.90 16 11 N -0.73 -27.88 3.17 -461.40 -1.46 -29.34 16 12 C 0.70 26.51 8.07 179.06 1.45 27.96 16 13 O -0.59 -25.85 15.75 -4.00 -0.06 -25.92 16 14 N -0.52 -16.14 6.26 -184.74 -1.16 -17.29 16 15 N -0.50 -13.55 6.25 -175.66 -1.10 -14.65 16 16 C 0.61 15.23 7.94 86.76 0.69 15.92 16 17 O -0.54 -14.92 16.64 -3.95 -0.07 -14.98 16 18 C 0.00 -0.03 6.81 41.98 0.29 0.25 16 19 C 0.10 1.67 11.22 85.22 0.96 2.63 16 20 N -0.60 -9.59 11.41 -92.44 -1.05 -10.65 16 21 S 0.82 10.88 23.69 -56.49 -1.34 9.54 16 22 N -0.57 -11.24 11.00 -80.59 -0.89 -12.12 16 23 C 0.44 18.73 2.79 71.98 0.20 18.93 16 24 F -0.19 -7.93 15.84 44.97 0.71 -7.22 16 25 F -0.18 -7.86 16.83 44.97 0.76 -7.11 16 26 F -0.18 -7.47 16.97 44.97 0.76 -6.71 16 27 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 28 H 0.40 14.05 6.51 -92.70 -0.60 13.44 16 29 H 0.45 12.81 8.10 -213.32 -1.73 11.08 16 30 H 0.43 11.30 6.29 -213.32 -1.34 9.96 16 31 H 0.23 2.81 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -61.54 308.49 -0.92 -62.46 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: -2.44 Total: 25.51 kcal Atomic # 6 Polarization: 49.12 SS G_CDS: 4.32 Total: 53.44 kcal Atomic # 7 Polarization: -125.24 SS G_CDS: -5.36 Total: -130.60 kcal Atomic # 8 Polarization: -40.77 SS G_CDS: -0.13 Total: -40.90 kcal Atomic # 9 Polarization: -23.27 SS G_CDS: 2.23 Total: -21.04 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 1.79 Total: 41.59 kcal Atomic # 16 Polarization: 10.88 SS G_CDS: -1.34 Total: 9.54 kcal Total: -61.54 -0.92 -62.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209330482.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.317 kcal (2) G-P(sol) polarization free energy of solvation -61.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds